Update figures - make more legible

Al-Murphy · Jul 8, 2022 · ffe2de9 · ffe2de9
1 parent e407871
commit ffe2de9
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Showing 2 changed files with 247 additions and 244 deletions.
diff --git a/analysis.Rmd b/analysis.Rmd
@@ -23,7 +23,7 @@ knitr::opts_chunk$set(
   comment = "#>",
   #root.dir = root.dir
   fig.height = 6,
-  fig.width = 7.00787 #178mm
+  fig.width = 8 #178mm
 )  
 knitr::opts_knit$set(#root.dir = root.dir, 
                      dpi = 350)  
@@ -102,7 +102,8 @@ q10 <- c(
   "cadetblue4",
   "cadetblue2"
 )
-
+size1 <- 7.4
+size2 <- 10.5
 all_n_ind <- c(5,10,20,30,40)
 all_n_cells <- c(50,100,250,500)
 tmp <- expand.grid(all_n_ind, all_n_cells)
@@ -140,11 +141,11 @@ plt_mcc1 <-
     scale_colour_manual(values=q10)+
     labs(colour='Method',y="Matthews Correlation Coefficient (MCC)",
          x="Number of Individuals - Number of cells")+
-  theme(axis.text.x = element_text(size=6),
-        axis.text.y = element_text(size=6),
-        axis.title.x = element_text(size=9),
-        axis.title.y = element_text(size=9),
-        legend.text = element_text(size=9),
+  theme(axis.text.x = element_text(size=size1),
+        axis.text.y = element_text(size=size1),
+        axis.title.x = element_text(size=size2),
+        axis.title.y = element_text(size=size2),
+        legend.text = element_text(size=size2),
         legend.title = element_blank())
 #plot top 4
 plt_mcc2 <-
@@ -159,11 +160,11 @@ plt_mcc2 <-
   theme_cowplot()+
   labs(colour='Method',y="Matthews Correlation Coefficient (MCC)",
        x="Number of Individuals - Number of cells")+
-  theme(axis.text.x = element_text(size=6),
-        axis.text.y = element_text(size=6),
-        axis.title.x = element_text(size=9),
+  theme(axis.text.x = element_text(size=size1),
+        axis.text.y = element_text(size=size1),
+        axis.title.x = element_text(size=size2),
         axis.title.y = element_blank(),
-        legend.text = element_text(size=9),
+        legend.text = element_text(size=size2),
         legend.title = element_blank())+
   #get matching colours for DEG approaches from full graph
   scale_colour_manual(values=q10[c(1,3,4,7)])
@@ -232,11 +233,11 @@ ggplot(mcc_res_imbal)+
   scale_colour_manual(values=q10)+
   labs(colour='Method',y="Matthews Correlation Coefficient (MCC)",
        x="Number of Individuals - Number of cells")+
-  theme(axis.text.x = element_text(size=6),
-        axis.text.y = element_text(size=6),
-        axis.title.x = element_text(size=9),
-        axis.title.y = element_text(size=9),
-        legend.text = element_text(size=9),
+  theme(axis.text.x = element_text(size=size1),
+        axis.text.y = element_text(size=size1),
+        axis.title.x = element_text(size=size2),
+        axis.title.y = element_text(size=size2),
+        legend.text = element_text(size=size2),
         legend.title = element_blank())
 ```
 
@@ -312,12 +313,12 @@ for(prop_i in prop_DEGs){
     labs(colour='Method',y="1 - Type 2 error",
          x="Type 1 error")+
     ggtitle(as.character(prop_i))+
-    theme(plot.title = element_text(size = 9, face = NULL),
-          axis.text.x = element_text(size=6),
-          axis.text.y = element_text(size=6),
-          axis.title.x = element_text(size=9),
-          axis.title.y = element_text(size=9),
-          legend.text = element_text(size=9),
+    theme(plot.title = element_text(size = size2, face = NULL),
+          axis.text.x = element_text(size=size1),
+          axis.text.y = element_text(size=size1),
+          axis.title.x = element_text(size=size2),
+          axis.title.y = element_text(size=size2),
+          legend.text = element_text(size=size2),
           legend.title = element_blank())
 }