I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.
- oxli-bio/oxli - k-mers and the like (1 day ago)
- Adamtaranto/TE-splitter - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons. (3 weeks ago)
- Adamtaranto/teloclip - A tool for the recovery of unassembled telomeres from soft-clipped read alignments. (3 weeks ago)
- Adamtaranto/TIRmite - Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons. (3 weeks ago)
- Adamtaranto/adamtaranto - (1 month ago)
- Adamtaranto/learn-hatch (0.1.0, 1 month ago) - Learning how to do python packaging with Hatch.
- Adamtaranto/teloclip (0.1.0, 1 month ago) - A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
- Adamtaranto/blast-besties (1.2.0, 1 month ago) - Rapid discovery of reciprocal best blast pairs.
- Adamtaranto/TE-insertion-scanner (0.2.1, 1 month ago) - Scan whole genome alignments for signatures of transposon insertion.
- KamilSJaron/smudgeplot (v0.4.0, 1 month ago) - Inference of ploidy and heterozygosity structure using whole genome sequencing data
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