samtools: update to 1.16.1

- upgrade dependency htslib to 1.16
- also fixes htslib so permission issue (samtools/htslib#1525)

extra-scientific/htslib/autobuild/patches/0001-fix-so-permission.patch

@@ -0,0 +1,12 @@
+diff --git a/Makefile b/Makefile
+index bb84a25..6ed49a0 100644
+--- a/Makefile
++++ b/Makefile
+@@ -58,7 +58,7 @@ MKDIR_P = mkdir -p
+ INSTALL = install -p
+ INSTALL_DATA    = $(INSTALL) -m 644
+ INSTALL_DIR     = $(MKDIR_P) -m 755
+-INSTALL_LIB     = $(INSTALL_DATA)
++INSTALL_LIB     = $(INSTALL)
+ INSTALL_MAN     = $(INSTALL_DATA)
+ INSTALL_PROGRAM = $(INSTALL)

extra-scientific/htslib/spec

@@ -1,6 +1,5 @@
-VER=1.9
-REL=1
+VER=1.16
 SRCS="tbl::https://github.com/samtools/htslib/releases/download/$VER/htslib-$VER.tar.bz2"
-CHKSUMS="sha256::e04b877057e8b3b8425d957f057b42f0e8509173621d3eccaedd0da607d9929a"
+CHKSUMS="sha256::606b7c7aff73734cf033ecd156f40529fa5792f54524952a28938ca0890d7924"
 
 CHKUPDATE="anitya::id=13500"

extra-scientific/samtools/spec

@@ -1,4 +1,4 @@
-VER=1.9
+VER=1.16.1
 SRCS="tbl::https://github.com/samtools/samtools/releases/download/$VER/samtools-$VER.tar.bz2"
-CHKSUMS="sha256::083f688d7070082411c72c27372104ed472ed7a620591d06f928e653ebc23482"
+CHKSUMS="sha256::2fa0a25f78594cf23d07c9d32d5060a14f1c5ee14d7b0af7a8a71abc9fdf1d07"
 CHKUPDATE="anitya::id=4759"