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@AMRmicrobiology

AMRmicrobiology

README.md

Welcome to the github space of the @AMRmicrobiology group from ISGlobal 👋

🙋‍♀️ ISGlobal's mission is to improve global health and promote health equity through excellence in research and the translation and application of knowledge. Our research group focuses on the molecular bases of microbial resistance on multiple clinical multiresistant bacteria.

👩‍💻 Below you can find a compilation of curated pipelines built using Nextflow aimed to ease the research on antimicrobial resistant genes (ARGs) in clinical strains.

🌈 🍿 🧙

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  1. WGS-Analysis-VariantCalling WGS-Analysis-VariantCalling Public

    Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.

    Nextflow 1

  2. ONT_BACTERIAL_ANALYSIS ONT_BACTERIAL_ANALYSIS Public

    ONT-Bacterial_Analysis

    Nextflow

  3. .github .github Public

    Files for @AMRmicrobiology GitHub organisation

Repositories

Showing 3 of 3 repositories
  • ONT_BACTERIAL_ANALYSIS Public

    ONT-Bacterial_Analysis

    AMRmicrobiology/ONT_BACTERIAL_ANALYSIS’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Jan 20, 2025
  • WGS-Analysis-VariantCalling Public

    Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.

    AMRmicrobiology/WGS-Analysis-VariantCalling’s past year of commit activity
    Nextflow 1 GPL-3.0 0 0 0 Updated Jan 20, 2025
  • .github Public

    Files for @AMRmicrobiology GitHub organisation

    AMRmicrobiology/.github’s past year of commit activity
    0 0 0 0 Updated Dec 13, 2024

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