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@ADAC-UoN

Advanced Data Analysis Centre University of Nottingham

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  1. predict.genes.by.exonerate.pipeline predict.genes.by.exonerate.pipeline Public

    Perl pipeline for prediction of genes based on Guy Slater’s Exonerate. As used in Brown et al. Characterisation of retroviruses in the horse genome and their transcriptional activity via transcript…

    Perl 3 5

  2. Cluster.Rank.interactive.R Cluster.Rank.interactive.R Public

    Cluster Rank - compare and rank hierarchical clustering methods

    R 2

  3. PIMMS PIMMS Public

    PIMMS: Pragmatic Insertional Mutation Mapping system (PIMMS) mapping pipeline

    Perl 1 1

  4. fqcounter fqcounter Public

    Speedy tool for counting reads in fastq / fastq.gz files (c++ multithreaded)

    C 1

  5. subset.fastq subset.fastq Public

    perl script to subset a fastq file.

    Perl

  6. BLAST2Matrix BLAST2Matrix Public

    An easy to use PERL blast wrapper for comparing a series of query sequences to a group of local databases.

    Perl 1

Repositories

Showing 10 of 12 repositories
  • MLST Public

    Scripts used to determine MLST loci for Dichelobacter nodosus scheme

    ADAC-UoN/MLST’s past year of commit activity
    R 0 0 0 0 Updated May 30, 2017
  • predict.genes.by.exonerate.pipeline Public

    Perl pipeline for prediction of genes based on Guy Slater’s Exonerate. As used in Brown et al. Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing. Virology in press 2012 and Tarlinton et al. Characterisation of a group of endogenous gammaretroviruses in the canine genome. The Vete…

    ADAC-UoN/predict.genes.by.exonerate.pipeline’s past year of commit activity
    Perl 3 5 0 0 Updated May 17, 2017
  • DECIPHER-Sequence-Alignment Public

    High throughput nucleotide and protein secondary structure based alignment R script, created from the R package DECIPHER doi:10.1186/s12859-015-0749-z

    ADAC-UoN/DECIPHER-Sequence-Alignment’s past year of commit activity
    R 0 0 0 0 Updated Apr 26, 2017
  • fqcounter Public

    Speedy tool for counting reads in fastq / fastq.gz files (c++ multithreaded)

    ADAC-UoN/fqcounter’s past year of commit activity
    C 1 0 0 0 Updated Feb 15, 2016
  • klib Public Forked from attractivechaos/klib

    A standalone and lightweight C library

    ADAC-UoN/klib’s past year of commit activity
    C 0 614 0 0 Updated Jan 21, 2016
  • PIMMS Public

    PIMMS: Pragmatic Insertional Mutation Mapping system (PIMMS) mapping pipeline

    ADAC-UoN/PIMMS’s past year of commit activity
    Perl 1 GPL-2.0 1 0 0 Updated Mar 31, 2015
  • NIMBL_hg19 Public

    Human (hg19) genome files for NIMBL

    ADAC-UoN/NIMBL_hg19’s past year of commit activity
    0 0 0 0 Updated Jun 12, 2014
  • NIMBL_annotation Public

    Annotation Files for NIMBL

    ADAC-UoN/NIMBL_annotation’s past year of commit activity
    0 0 0 0 Updated Jun 12, 2014
  • intergenic.dist.2CLASH Public

    Scripts to determine the potential overlap of regulatory units. Russell K, Hasenkamp S, Emes R, Horrocks P. BMC Genomics. 2013 Apr 19;14:267. doi: 10.1186/1471-2164-14-267.

    ADAC-UoN/intergenic.dist.2CLASH’s past year of commit activity
    Perl 0 0 0 0 Updated Jun 12, 2014
  • BLAST2Matrix Public

    An easy to use PERL blast wrapper for comparing a series of query sequences to a group of local databases.

    ADAC-UoN/BLAST2Matrix’s past year of commit activity
    Perl 0 1 0 0 Updated Jun 12, 2014
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