GitHub - ACAD-UofA/tools: Various tools to process and analyse sequencing data (from bitbucket grg)

ACAD-UofA / tools Public

Notifications You must be signed in to change notification settings
Fork 1
Star 0

Various tools to process and analyse sequencing data (from bitbucket grg)

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
SNP_selection		SNP_selection
restrict_sites		restrict_sites
sex_ratio		sex_ratio
sh		sh
src		src
aabb.py		aabb.py
asn_flat.py		asn_flat.py
bam2fraglenhist.sh		bam2fraglenhist.sh
bibfrob.py		bibfrob.py
bs_convert.py		bs_convert.py
colgrep.py		colgrep.py
colhist.py		colhist.py
colours.py		colours.py
colplot.py		colplot.py
dp_filter_stats.py		dp_filter_stats.py
dstat.py		dstat.py
dstats_cor.py		dstats_cor.py
eig2fa.py		eig2fa.py
eig2genepop.py		eig2genepop.py
eig2treemix.py		eig2treemix.py
eig_flip_geno.py		eig_flip_geno.py
eig_gt_stats.py		eig_gt_stats.py
eig_highlight_missing_genotypes.py		eig_highlight_missing_genotypes.py
eig_subsample.py		eig_subsample.py
f-stats.py		f-stats.py
fa_rand.py		fa_rand.py
fa_rmregion.py		fa_rmregion.py
fagrab.py		fagrab.py
filter_sam.py		filter_sam.py
find_polarising_sites.py		find_polarising_sites.py
flagstats_transpose_and_combine.py		flagstats_transpose_and_combine.py
fq2fraglenhist.sh		fq2fraglenhist.sh
gff2bed.py		gff2bed.py
gzopen.py		gzopen.py
kmer_uniq.py		kmer_uniq.py
meth-acf.py		meth-acf.py
mi.py		mi.py
min_length_collate_from_sam.py		min_length_collate_from_sam.py
min_length_plot.py		min_length_plot.py
ntcomp.py		ntcomp.py
parsers.py		parsers.py
plink.py		plink.py
plot_RoH.py		plot_RoH.py
plot_chrom_cov_from_vcf.py		plot_chrom_cov_from_vcf.py
plot_coverage.py		plot_coverage.py
plot_d_statistics.py		plot_d_statistics.py
plot_d_statistics2.py		plot_d_statistics2.py
plot_d_statistics3.py		plot_d_statistics3.py
plot_d_statistics_angsd.py		plot_d_statistics_angsd.py
plot_dist_hist.py		plot_dist_hist.py
plot_fraglen_from_fasta.py		plot_fraglen_from_fasta.py
plot_fraglen_from_sam.py		plot_fraglen_from_sam.py
plot_fraglen_from_sam2.py		plot_fraglen_from_sam2.py
plot_hist_dp_qual.py		plot_hist_dp_qual.py
plot_isize.py		plot_isize.py
plot_length_distrib-bastien.py		plot_length_distrib-bastien.py
plot_length_distrib.py		plot_length_distrib.py
plot_length_distrib_multi.py		plot_length_distrib_multi.py
plot_mi_hist.py		plot_mi_hist.py
plot_pca_evec.py		plot_pca_evec.py
plot_q.py		plot_q.py
plot_saguaro_recomb_density.py		plot_saguaro_recomb_density.py
plot_samples_covered.py		plot_samples_covered.py
plot_scree.py		plot_scree.py
plot_sex.py		plot_sex.py
qualhist.py		qualhist.py
remove_introgressed_genotypes.py		remove_introgressed_genotypes.py
repeatsfna2bed.py		repeatsfna2bed.py
sexassign.py		sexassign.py
snp50_validate.py		snp50_validate.py
snpchip2eig.py		snpchip2eig.py
snpchip2phylip.py		snpchip2phylip.py
tree2pdf.py		tree2pdf.py
vcf2eig.py		vcf2eig.py
vcf2nexus.py		vcf2nexus.py
vcf2phylip-dontuse.py		vcf2phylip-dontuse.py
vcf_gt_stats.py		vcf_gt_stats.py
vcfeig2smcpp.py		vcfeig2smcpp.py
violinplot.py		violinplot.py