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.nextflow.log.2
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Dec-13 13:53:39.707 [main] DEBUG nextflow.cli.Launcher - $> nextflow run bin/tosortedlist_operator.nf
Dec-13 13:53:39.806 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 23.04.1
Dec-13 13:53:39.837 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/asma/.nextflow/plugins; core-plugins: nf-amazon@1.16.2,nf-azure@1.0.1,nf-codecommit@0.1.4,nf-console@1.0.5,nf-ga4gh@1.0.5,nf-google@1.7.3,nf-tower@1.5.12,nf-wave@0.8.2
Dec-13 13:53:39.849 [main] INFO org.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Dec-13 13:53:39.850 [main] INFO org.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Dec-13 13:53:39.854 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode
Dec-13 13:53:39.866 [main] INFO org.pf4j.AbstractPluginManager - No plugins
Dec-13 13:53:39.968 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default
Dec-13 13:53:39.987 [main] INFO nextflow.cli.CmdRun - Launching `bin/tosortedlist_operator.nf` [elated_northcutt] DSL2 - revision: 25e810eb00
Dec-13 13:53:39.988 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
Dec-13 13:53:39.988 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[]
Dec-13 13:53:39.999 [main] DEBUG nextflow.secret.LocalSecretsProvider - Secrets store: /home/asma/.nextflow/secrets/store.json
Dec-13 13:53:40.007 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@6a933be2] - activable => nextflow.secret.LocalSecretsProvider@6a933be2
Dec-13 13:53:40.088 [main] DEBUG nextflow.Session - Session UUID: 60cb6f78-d662-4fb6-828e-2524689fbeb4
Dec-13 13:53:40.088 [main] DEBUG nextflow.Session - Run name: elated_northcutt
Dec-13 13:53:40.091 [main] DEBUG nextflow.Session - Executor pool size: 4
Dec-13 13:53:40.106 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=12; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false
Dec-13 13:53:40.139 [main] DEBUG nextflow.cli.CmdRun -
Version: 23.04.1 build 5866
Created: 15-04-2023 06:51 UTC (12:21 IDT)
System: Linux 5.4.0-167-generic
Runtime: Groovy 3.0.16 on OpenJDK 64-Bit Server VM 17.0.9+9-Ubuntu-120.04
Encoding: UTF-8 (UTF-8)
Process: 1264232@zddevgin02 [172.17.0.66]
CPUs: 4 - Mem: 31.3 GB (11.5 GB) - Swap: 8 GB (7.8 GB)
Dec-13 13:53:40.165 [main] DEBUG nextflow.Session - Work-dir: /home/asma/nextflow-workshop/work [ext2/ext3]
Dec-13 13:53:40.165 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /home/asma/nextflow-workshop/bin/bin
Dec-13 13:53:40.179 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
Dec-13 13:53:40.191 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
Dec-13 13:53:40.213 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
Dec-13 13:53:40.224 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 5; maxThreads: 1000
Dec-13 13:53:40.300 [main] DEBUG nextflow.Session - Session start
Dec-13 13:53:41.031 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Dec-13 13:53:41.129 [main] DEBUG nextflow.Session - Workflow process names [dsl2]:
Dec-13 13:53:41.129 [main] DEBUG nextflow.Session - Igniting dataflow network (1)
Dec-13 13:53:41.130 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination
Dec-13 13:53:41.130 [main] DEBUG nextflow.Session - Session await
Dec-13 13:53:41.130 [main] DEBUG nextflow.Session - Session await > all processes finished
Dec-13 13:53:41.130 [main] DEBUG nextflow.Session - Session await > all barriers passed
Dec-13 13:53:41.142 [Actor Thread 5] INFO nextflow.script.BaseScript - [1, 2, 3, 4]
Dec-13 13:53:41.145 [Actor Thread 5] INFO nextflow.script.BaseScript - Done
Dec-13 13:53:41.158 [main] DEBUG nextflow.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=0; failedCount=0; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=0ms; failedDuration=0ms; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=0; peakCpus=0; peakMemory=0; ]
Dec-13 13:53:41.331 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
Dec-13 13:53:41.355 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'FileTransfer' shutdown completed (hard=false)
Dec-13 13:53:41.355 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye