-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy path.nextflow.log.1
43 lines (43 loc) · 4.34 KB
/
.nextflow.log.1
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
Dec-13 13:53:42.784 [main] DEBUG nextflow.cli.Launcher - $> nextflow run bin/unique_operator.nf
Dec-13 13:53:42.878 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 23.04.1
Dec-13 13:53:42.905 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/asma/.nextflow/plugins; core-plugins: nf-amazon@1.16.2,nf-azure@1.0.1,nf-codecommit@0.1.4,nf-console@1.0.5,nf-ga4gh@1.0.5,nf-google@1.7.3,nf-tower@1.5.12,nf-wave@0.8.2
Dec-13 13:53:42.917 [main] INFO org.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Dec-13 13:53:42.918 [main] INFO org.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Dec-13 13:53:42.922 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode
Dec-13 13:53:42.935 [main] INFO org.pf4j.AbstractPluginManager - No plugins
Dec-13 13:53:43.034 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default
Dec-13 13:53:43.054 [main] INFO nextflow.cli.CmdRun - Launching `bin/unique_operator.nf` [thirsty_gautier] DSL2 - revision: 5722dca47a
Dec-13 13:53:43.055 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
Dec-13 13:53:43.055 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[]
Dec-13 13:53:43.067 [main] DEBUG nextflow.secret.LocalSecretsProvider - Secrets store: /home/asma/.nextflow/secrets/store.json
Dec-13 13:53:43.075 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@6a933be2] - activable => nextflow.secret.LocalSecretsProvider@6a933be2
Dec-13 13:53:43.159 [main] DEBUG nextflow.Session - Session UUID: 378ceff9-e528-4db1-804c-47e5d4fae002
Dec-13 13:53:43.159 [main] DEBUG nextflow.Session - Run name: thirsty_gautier
Dec-13 13:53:43.161 [main] DEBUG nextflow.Session - Executor pool size: 4
Dec-13 13:53:43.178 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=12; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false
Dec-13 13:53:43.212 [main] DEBUG nextflow.cli.CmdRun -
Version: 23.04.1 build 5866
Created: 15-04-2023 06:51 UTC (12:21 IDT)
System: Linux 5.4.0-167-generic
Runtime: Groovy 3.0.16 on OpenJDK 64-Bit Server VM 17.0.9+9-Ubuntu-120.04
Encoding: UTF-8 (UTF-8)
Process: 1264322@zddevgin02 [172.17.0.66]
CPUs: 4 - Mem: 31.3 GB (11.5 GB) - Swap: 8 GB (7.8 GB)
Dec-13 13:53:43.237 [main] DEBUG nextflow.Session - Work-dir: /home/asma/nextflow-workshop/work [ext2/ext3]
Dec-13 13:53:43.237 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /home/asma/nextflow-workshop/bin/bin
Dec-13 13:53:43.250 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
Dec-13 13:53:43.264 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
Dec-13 13:53:43.289 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
Dec-13 13:53:43.301 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 5; maxThreads: 1000
Dec-13 13:53:43.382 [main] DEBUG nextflow.Session - Session start
Dec-13 13:53:44.040 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Dec-13 13:53:44.150 [main] DEBUG nextflow.Session - Workflow process names [dsl2]:
Dec-13 13:53:44.151 [main] DEBUG nextflow.Session - Igniting dataflow network (1)
Dec-13 13:53:44.152 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination
Dec-13 13:53:44.152 [main] DEBUG nextflow.Session - Session await
Dec-13 13:53:44.152 [main] DEBUG nextflow.Session - Session await > all processes finished
Dec-13 13:53:44.152 [main] DEBUG nextflow.Session - Session await > all barriers passed
Dec-13 13:53:44.172 [main] DEBUG nextflow.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=0; failedCount=0; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=0ms; failedDuration=0ms; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=0; peakCpus=0; peakMemory=0; ]
Dec-13 13:53:44.203 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
Dec-13 13:53:44.231 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'FileTransfer' shutdown completed (hard=false)
Dec-13 13:53:44.231 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye