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TF-DNA Binding Prediction

Predicting transcription factor-DNA binding from sequence

Content

This repository contains the following files:

  • notebooks:
    • TF_Binding_Prediction.ipynb: Implementation of the per-TF model and all results and comparisons between methods
    • Baseline.ipynb: Implementation and analysis for the baseline method
    • Multi_TF(1).ipynb: Implementation of the multi-TF model-1
    • Multi_TF(3).ipynb: Implementation of the multi-TF model-2
  • data: Data containing binding strenght of TFs to segments of DNA sequence
  • results: Classification statistics for all methods and all TFs as well as extra figures and plots for correlation analysis, etc