From 5c7b9c0cbec4f39262a047009a2f51004c97ff77 Mon Sep 17 00:00:00 2001 From: yodeng Date: Wed, 26 Apr 2023 14:38:05 +0800 Subject: [PATCH] update some object name --- runjob/__init__.py | 4 ++-- setup.py | 6 +++--- src/__init__.py | 4 ++-- src/jobstat.py | 5 ++--- src/qsub.py | 6 +++--- src/{sge_run.py => run.py} | 8 ++++---- src/utils.py | 2 +- 7 files changed, 17 insertions(+), 18 deletions(-) rename src/{sge_run.py => run.py} (99%) diff --git a/runjob/__init__.py b/runjob/__init__.py index 85c6b73..ca044c6 100644 --- a/runjob/__init__.py +++ b/runjob/__init__.py @@ -1,7 +1,7 @@ -from .utils import Mylog as log +from .utils import getlog as log from .utils import JobQueue, QsubError, JobFailedError from .loger import Formatter from ._version import __version__ from .qsub import qsub as runjob -from .sge_run import RunSge as runsge +from .run import RunJob as runsge from .config import load_config as Config diff --git a/setup.py b/setup.py index eba73fe..1aa8420 100644 --- a/setup.py +++ b/setup.py @@ -108,9 +108,9 @@ def _entrys(self): '%s = %s.qsub:main' % (self.name, self.name), '%s = %s.jobstat:main' % ("qs", self.name), '%s = %s.jobstat:batchStat' % ("qcs", self.name), - '%s = %s.sge_run:main' % ("runsge", self.name), - '%s = %s.sge_run:main' % ("runshell", self.name), - '%s = %s.sge_run:main' % ("runbatch", self.name), + '%s = %s.run:main' % ("runsge", self.name), + '%s = %s.run:main' % ("runshell", self.name), + '%s = %s.run:main' % ("runbatch", self.name), ] return eps diff --git a/src/__init__.py b/src/__init__.py index 85c6b73..ca044c6 100644 --- a/src/__init__.py +++ b/src/__init__.py @@ -1,7 +1,7 @@ -from .utils import Mylog as log +from .utils import getlog as log from .utils import JobQueue, QsubError, JobFailedError from .loger import Formatter from ._version import __version__ from .qsub import qsub as runjob -from .sge_run import RunSge as runsge +from .run import RunJob as runsge from .config import load_config as Config diff --git a/src/jobstat.py b/src/jobstat.py index 1df3f6c..9553b54 100644 --- a/src/jobstat.py +++ b/src/jobstat.py @@ -5,7 +5,6 @@ qcs --help ''' -from __future__ import print_function import os import re import sys @@ -20,7 +19,7 @@ from collections import defaultdict from .utils import * -from .bc_stat import * +from .stat_bc import * from .cluster import * from .job import Jobfile from ._version import __version__ @@ -267,7 +266,7 @@ def batchStat(): if access_key_secret is None or access_key_id is None: sys.exit("No access to connect OSS") client = Client(region, access_key_id, access_key_secret) - logger = Mylog(name=__name__) + logger = getlog(name=__name__) user = getpass.getuser() if args.job: try: diff --git a/src/qsub.py b/src/qsub.py index 4f6049d..ec4d725 100644 --- a/src/qsub.py +++ b/src/qsub.py @@ -4,11 +4,11 @@ from . import dag from .utils import * from .job import Jobfile -from .sge_run import RunSge +from .run import RunJob from .config import load_config -class qsub(RunSge): +class qsub(RunJob): def __init__(self, config=None): ''' @@ -107,7 +107,7 @@ def main(): if args.local: args.mode = "local" conf.update_dict(**args.__dict__) - logger = Mylog(logfile=args.log, level=args.debug and "debug" or "info") + logger = getlog(logfile=args.log, level=args.debug and "debug" or "info") qjobs = qsub(config=conf) try: qjobs.run(retry=args.resub, ivs=args.resubivs) diff --git a/src/sge_run.py b/src/run.py similarity index 99% rename from src/sge_run.py rename to src/run.py index 0894e1e..18f6084 100644 --- a/src/sge_run.py +++ b/src/run.py @@ -18,7 +18,7 @@ from .config import load_config, print_config -class RunSge(object): +class RunJob(object): def __init__(self, config=None): ''' @@ -629,9 +629,9 @@ def main(): args.logdir = "runjob_"+os.path.basename(args.jobfile) + "_log_dir" args.logdir = os.path.join(args.workdir, args.logdir) conf.update_dict(**args.__dict__) - logger = Mylog(logfile=args.log, - level="debug" if args.debug else "info", name=__name__) - runsge = RunSge(config=conf) + logger = getlog(logfile=args.log, + level="debug" if args.debug else "info", name=__name__) + runsge = RunJob(config=conf) try: runsge.run(retry=args.resub, ivs=args.resubivs) except (JobFailedError, QsubError): diff --git a/src/utils.py b/src/utils.py index 482b993..07c1d59 100644 --- a/src/utils.py +++ b/src/utils.py @@ -169,7 +169,7 @@ def _run(self): raise e -def Mylog(logfile=None, level="info", name=None): +def getlog(logfile=None, level="info", name=None): logger = logging.getLogger(name) if level.lower() == "info": logger.setLevel(logging.INFO)