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docker-compose.yml
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---
version: '3'
services:
database:
image: postgres:12.16-alpine3.18
container_name: database
volumes:
- ./data/postgresql/data:/var/lib/postgresql/data
environment:
POSTGRES_PASSWORD: fragalysis
POSTGRES_DB: frag
PGDATA: /var/lib/postgresql/data/pgdata
ports:
- "5432:5432"
healthcheck:
test: pg_isready -U postgres -d frag
interval: 10s
timeout: 2s
retries: 5
start_period: 10s
# The graph
graph:
image: neo4j:4.4.2
container_name: graph
ports:
# These are not used in production
- "7474:7474"
- "7687:7687"
ulimits:
nofile:
soft: 40000
hard: 40000
volumes:
- ./data/neo4j/data:/data
- ./data/neo4j/logs:/logs
environment:
- NEO4J_AUTH=none
- NEO4J_dbms_memory_pagecache_size=4G
healthcheck:
test: wget http://localhost:7474 || exit 1
interval: 10s
timeout: 10s
retries: 20
start_period: 10s
# Redis (Celery/Worker Broker)
redis:
image: redis:7.2.3-alpine3.18
container_name: redis
ports:
- "6379:6379"
healthcheck:
test: redis-cli ping
interval: 10s
timeout: 2s
retries: 5
start_period: 10s
stack:
image: ${STACK_NAMESPACE:-xchem}/fragalysis-stack:${STACK_TAG:-latest}
container_name: stack
build:
context: .
dockerfile: Dockerfile
command: /bin/bash /code/launch-stack.sh
volumes:
- ./data/logs:/code/logs/
- ./data/media:/code/media/
- .:/code/
environment:
POSTGRESQL_USER: postgres
# Celery tasks need to run synchronously
CELERY_TASK_ALWAYS_EAGER: 'True'
# Error reporting and default/root log-level
FRAGALYSIS_BACKEND_SENTRY_DNS: ${FRAGALYSIS_BACKEND_SENTRY_DNS}
LOGGING_FRAMEWORK_ROOT_LEVEL: ${LOGGING_FRAMEWORK_ROOT_LEVEL:-INFO}
# Keycloak configuration
OIDC_KEYCLOAK_REALM: ${OIDC_KEYCLOAK_REALM}
OIDC_RP_CLIENT_ID: ${OIDC_RP_CLIENT_ID:-fragalysis-local}
OIDC_RP_CLIENT_SECRET: ${OIDC_RP_CLIENT_SECRET}
OIDC_AS_CLIENT_ID: ${OIDC_AS_CLIENT_ID:-account-server-api}
OIDC_DM_CLIENT_ID: ${OIDC_DM_CLIENT_ID:-data-manager-api}
OIDC_RENEW_ID_TOKEN_EXPIRY_MINUTES: '210'
# Squonk configuration
SQUONK2_VERIFY_CERTIFICATES: 'No'
SQUONK2_UNIT_BILLING_DAY: 3
SQUONK2_PRODUCT_FLAVOUR: BRONZE
SQUONK2_SLUG: fs-local
SQUONK2_ORG_OWNER: ${SQUONK2_ORG_OWNER}
SQUONK2_ORG_OWNER_PASSWORD: ${SQUONK2_ORG_OWNER_PASSWORD}
SQUONK2_ORG_UUID: ${SQUONK2_ORG_UUID}
SQUONK2_UI_URL: ${SQUONK2_UI_URL}
SQUONK2_DMAPI_URL: ${SQUONK2_DMAPI_URL}
SQUONK2_ASAPI_URL: ${SQUONK2_ASAPI_URL}
ports:
- "8080:80"
depends_on:
database:
condition: service_healthy
redis:
condition: service_healthy
graph:
condition: service_healthy