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build.xml
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build.xml
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<project name="batchcorrection" default="all">
<property name="tool.xml" value="batch_correction.xml"/>
<property name="conda.dir" value="${user.home}/w4m-conda"/>
<!--~~~
~ ALL ~
~~~~~-->
<target name="all"/>
<!--~~~~
~ TEST ~
~~~~~-->
<target name="test" depends="planemo.lint,planemo.test"/>
<!--~~~~~~~~~~~~
~ PLANEMO LINT ~
~~~~~~~~~~~~~-->
<target name="planemo.lint">
<exec executable="planemo" failonerror="true">
<arg value="lint"/>
<arg value="${tool.xml}"/>
</exec>
</target>
<!--~~~~~~~~~~~~
~ PLANEMO TEST ~
~~~~~~~~~~~~~-->
<target name="planemo.test">
<exec executable="planemo" failonerror="true">
<arg value="test"/>
<arg value="--conda_prefix"/>
<arg value="${conda.dir}"/>
<arg value="--galaxy_branch"/>
<arg value="release_17.05"/>
<arg value="--conda_dependency_resolution"/>
<arg value="${tool.xml}"/>
</exec>
</target>
<!--~~~~~~~~~~~~~~~~~~~~~
~ PLANEMO CONDA INSTALL ~
~~~~~~~~~~~~~~~~~~~~~~-->
<target name="planemo.conda.install" depends="planemo.conda.init">
<exec executable="planemo" failonerror="true">
<arg value="conda_install"/>
<arg value="--conda_prefix"/>
<arg value="${conda.dir}"/>
<arg value="${tool.xml}"/>
</exec>
</target>
<!--~~~~~~~~~~~~~~~~~~
~ PLANEMO CONDA INIT ~
~~~~~~~~~~~~~~~~~~~-->
<target name="planemo.conda.init">
<exec executable="planemo" failonerror="true">
<arg value="conda_init"/>
<arg value="--conda_prefix"/>
<arg value="${conda.dir}"/>
</exec>
</target>
<!--~~~~~
~ CLEAN ~
~~~~~~-->
<target name="clean">
<delete dir="${conda.dir}"/>
</target>
</project>