From bcf05dbe82c0654eb4199f02ff3a54ca6de7026b Mon Sep 17 00:00:00 2001
From: "dependabot-preview[bot]"
 <27856297+dependabot-preview[bot]@users.noreply.github.com>
Date: Fri, 17 Jul 2020 01:29:47 +0000
Subject: [PATCH 1/2] :arrow_up: Bump pointCollection from `21d92f1` to
 `d7d1b8d`

Bumps [pointCollection](https://github.com/SmithB/pointCollection) from `21d92f1` to `d7d1b8d`.
- [Release notes](https://github.com/SmithB/pointCollection/releases)
- [Commits](https://github.com/SmithB/pointCollection/compare/21d92f130d9daa0f9456941954d4e91576e5ce81...d7d1b8d88aea3e79abc77c3386a0619abc8dba0c)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
---
 pointCollection | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pointCollection b/pointCollection
index 21d92f1..d7d1b8d 160000
--- a/pointCollection
+++ b/pointCollection
@@ -1 +1 @@
-Subproject commit 21d92f130d9daa0f9456941954d4e91576e5ce81
+Subproject commit d7d1b8d88aea3e79abc77c3386a0619abc8dba0c

From da2342f4979b1acad98c567c9321f0be7506f80e Mon Sep 17 00:00:00 2001
From: Wei Ji <weiji.leong@vuw.ac.nz>
Date: Fri, 17 Jul 2020 14:20:04 +1200
Subject: [PATCH 2/2] :pushpin: Install pointCollection properly via pip

Can get rid of the pointCollection submodule now that it is pip installable from Github using `poetry add git+https://github.com/SmithB/pointCollection.git`!
---
 .gitmodules     |  5 +----
 poetry.lock     | 35 ++++++++++++++++++++++++++++++++++-
 pointCollection |  1 -
 pyproject.toml  |  1 +
 4 files changed, 36 insertions(+), 6 deletions(-)
 delete mode 160000 pointCollection

diff --git a/.gitmodules b/.gitmodules
index a10bb33..0031f1a 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -1,6 +1,3 @@
 [submodule "ATL11"]
 	path = ATL11
-	url = https://github.com/suzanne64/ATL11
-[submodule "pointCollection"]
-	path = pointCollection
-	url = https://github.com/SmithB/pointCollection
+	url = https://github.com/suzanne64/ATL11
\ No newline at end of file
diff --git a/poetry.lock b/poetry.lock
index a6303fc..d238751 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -468,6 +468,14 @@ optional = false
 python-versions = ">3.5"
 version = "0.7.4"
 
+[[package]]
+category = "main"
+description = "GDAL: Geospatial Data Abstraction Library"
+name = "gdal"
+optional = false
+python-versions = "*"
+version = "3.0.4"
+
 [[package]]
 category = "main"
 description = "Geographic pandas extensions"
@@ -1265,6 +1273,27 @@ version = "0.13.1"
 [package.extras]
 dev = ["pre-commit", "tox"]
 
+[[package]]
+category = "main"
+description = "Utilities for organizing and manipulating point data"
+name = "pointCollection"
+optional = false
+python-versions = "*"
+version = "1.0.0.0"
+
+[package.dependencies]
+gdal = "3.0.4"
+h5py = "*"
+matplotlib = "*"
+netCDF4 = "*"
+numpy = "*"
+pyproj = "*"
+scipy = "*"
+
+[package.source]
+reference = "d7d1b8d88aea3e79abc77c3386a0619abc8dba0c"
+type = "git"
+url = "https://github.com/SmithB/pointCollection.git"
 [[package]]
 category = "main"
 description = "Python client for the Prometheus monitoring system."
@@ -1837,7 +1866,7 @@ version = "2.0.0"
 heapdict = "*"
 
 [metadata]
-content-hash = "0915771b9bff559a68a13fe9b991d1cbc96534b54038fde9181caec170a03213"
+content-hash = "7f45f51d7517a715a3fae7aea67c97352a885671fed232cdc475c6d05970f67d"
 python-versions = "^3.8"
 
 [metadata.files]
@@ -2045,6 +2074,9 @@ fsspec = [
     {file = "fsspec-0.7.4-py3-none-any.whl", hash = "sha256:1f9391c9b6e92a89949f0b0f7154b8b62a01f00b9c2767797d94ffa376dae9ab"},
     {file = "fsspec-0.7.4.tar.gz", hash = "sha256:7075fde6d617cd3a97eac633d230d868121a188a46d16a0dcb484eea0cf2b955"},
 ]
+gdal = [
+    {file = "GDAL-3.0.4.tar.gz", hash = "sha256:a17eaa6872e4b7f7fa82f86aeccecc57d224bd054952a56db64368ecaf18509c"},
+]
 geopandas = [
     {file = "geopandas-0.7.0-py2.py3-none-any.whl", hash = "sha256:dd478cfb979c7aca529a61c05f26a4606852547a0d7e22ae9babe0c70f7d73f8"},
     {file = "geopandas-0.7.0.tar.gz", hash = "sha256:19074b090ab928527193c50b383d31a259a9b84b18553562631295fa67f640bc"},
@@ -2526,6 +2558,7 @@ pluggy = [
     {file = "pluggy-0.13.1-py2.py3-none-any.whl", hash = "sha256:966c145cd83c96502c3c3868f50408687b38434af77734af1e9ca461a4081d2d"},
     {file = "pluggy-0.13.1.tar.gz", hash = "sha256:15b2acde666561e1298d71b523007ed7364de07029219b604cf808bfa1c765b0"},
 ]
+pointCollection = []
 prometheus-client = [
     {file = "prometheus_client-0.8.0-py2.py3-none-any.whl", hash = "sha256:983c7ac4b47478720db338f1491ef67a100b474e3bc7dafcbaefb7d0b8f9b01c"},
     {file = "prometheus_client-0.8.0.tar.gz", hash = "sha256:c6e6b706833a6bd1fd51711299edee907857be10ece535126a158f911ee80915"},
diff --git a/pointCollection b/pointCollection
deleted file mode 160000
index d7d1b8d..0000000
--- a/pointCollection
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit d7d1b8d88aea3e79abc77c3386a0619abc8dba0c
diff --git a/pyproject.toml b/pyproject.toml
index cd67b8f..81b6562 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -21,6 +21,7 @@ jupyterlab = "^2.1.5"
 lxml = "^4.5.0"
 matplotlib = "^3.2.2"
 numcodecs = "<=0.6.3"
+pointcollection = {git = "https://github.com/SmithB/pointCollection.git", rev = "d7d1b8d88aea3e79abc77c3386a0619abc8dba0c"}
 pydap = "^3.2.2"
 pyepsg = "^0.4.0"
 pygmt = "^0.1.1"