From 95f202f2120fed4e9f8a5f99104475a05d3c9def Mon Sep 17 00:00:00 2001
From: Vladimir Mikryukov <vmikryukov@gmail.com>
Date: Sun, 27 Oct 2024 17:29:33 +0200
Subject: [PATCH] bash tests - replace echo with printf (newline problems)

---
 test/test2_binary.sh | 55 ++++++--------------------------------------
 1 file changed, 7 insertions(+), 48 deletions(-)

diff --git a/test/test2_binary.sh b/test/test2_binary.sh
index aa4b512..bc8aa6f 100644
--- a/test/test2_binary.sh
+++ b/test/test2_binary.sh
@@ -9,15 +9,7 @@ total_tests=0
 # Test basic usage
 function test_basic_usage {
   result=$(../seqhasher test2.fasta -)
-  expected=$(cat <<EOF
->test2.fasta;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1
-AAAA
->test2.fasta;f74673f038f3657adfa522aa370b5cd161dec321;seq2
-ACTG
->test2.fasta;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3
-AAAA
-EOF
-)
+  expected=$(printf ">test2.fasta;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1\nAAAA\n>test2.fasta;65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2\nACTG\n>test2.fasta;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3\nAAAA\n")
   ((total_tests++))
   if [[ "$result" != "$expected" ]]; then
     echo -e "\e[31m'Basic usage' test failed\e[0m"
@@ -30,15 +22,7 @@ EOF
 # Test custom name
 function test_custom_name {
   result=$(../seqhasher --name "custom_name" test2.fasta -)
-  expected=$(cat <<EOF
->custom_name;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1
-AAAA
->custom_name;65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2
-ACTG
->custom_name;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3
-AAAA
-EOF
-)
+  expected=$(printf ">custom_name;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1\nAAAA\n>custom_name;65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2\nACTG\n>custom_name;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3\nAAAA\n")
   ((total_tests++))
   if [[ "$result" != "$expected" ]]; then
     echo -e "\e[31m'Custom name' test failed\e[0m"
@@ -51,12 +35,7 @@ EOF
 # Test headers only
 function test_headers_only {
   result=$(../seqhasher --headersonly test2.fasta -)
-  expected=$(cat <<EOF
-test2.fasta;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1
-test2.fasta;65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2
-test2.fasta;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3
-EOF
-)
+  expected=$(printf "test2.fasta;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1\ntest2.fasta;65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2\ntest2.fasta;e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3\n")
   ((total_tests++))
   if [[ "$result" != "$expected" ]]; then
     echo -e "\e[31m'Headers only' test failed\e[0m"
@@ -69,12 +48,7 @@ EOF
 # Test no filename
 function test_no_filename {
   result=$(../seqhasher --headersonly --nofilename test2.fasta -)
-  expected=$(cat <<EOF
-e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1
-65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2
-e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3
-EOF
-)
+  expected=$(printf "e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1\n65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2\ne2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3\n")
   ((total_tests++))
   if [[ "$result" != "$expected" ]]; then
     echo -e "\e[31m'No filename' test failed\e[0m"
@@ -87,12 +61,7 @@ EOF
 # Test xxHash and case-sensitive
 function test_xxhash_case_sensitive {
   result=$(../seqhasher --headersonly --nofilename --hash xxhash --casesensitive test2.fasta -)
-  expected=$(cat <<EOF  
-cf40b5b72bc43e77;seq1
-704b34bf20faedf2;seq2
-42a70d1abf84bf32;seq3
-EOF
-)
+  expected=$(printf "cf40b5b72bc43e77;seq1\n704b34bf20faedf2;seq2\n42a70d1abf84bf32;seq3\n")
   ((total_tests++))
   if [[ "$result" != "$expected" ]]; then
     echo -e "\e[31m'xxHash and case-sensitive' test failed\e[0m"
@@ -105,12 +74,7 @@ EOF
 # Test multiple hashes
 function test_multiple_hashes {
   result=$(../seqhasher --headersonly --nofilename --hash sha1,xxhash --casesensitive test2.fasta -)
-  expected=$(cat <<EOF
-e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;cf40b5b72bc43e77;seq1
-65c89f59d38cdbf90dfaf0b0a6884829df8396b0;704b34bf20faedf2;seq2
-70c881d4a26984ddce795f6f71817c9cf4480e79;42a70d1abf84bf32;seq3  
-EOF
-)
+  expected=$(printf "e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;cf40b5b72bc43e77;seq1\n65c89f59d38cdbf90dfaf0b0a6884829df8396b0;704b34bf20faedf2;seq2\n70c881d4a26984ddce795f6f71817c9cf4480e79;42a70d1abf84bf32;seq3\n")
   ((total_tests++))
   if [[ "$result" != "$expected" ]]; then
     echo -e "\e[31m'Multiple hashes' test failed\e[0m"
@@ -124,12 +88,7 @@ EOF
 function test_compressed_files {
   for ext in bz2 gz xz zst; do
     result=$(../seqhasher --headersonly --nofilename test2.fasta.$ext -)
-    expected=$(cat <<EOF
-e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1
-65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2
-e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3
-EOF
-)
+    expected=$(printf "e2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq1\n65c89f59d38cdbf90dfaf0b0a6884829df8396b0;seq2\ne2512172abf8cc9f67fdd49eb6cacf2df71bbad3;seq3\n")
     ((total_tests++))
     if [[ "$result" != "$expected" ]]; then
       echo -e "\e[31m'Compressed file' test failed for .$ext\e[0m"