From 2f317a0949be55f2d5bef970cb4e9bea85bc4062 Mon Sep 17 00:00:00 2001
From: Glenn Hickey <glenn.hickey@gmail.com>
Date: Mon, 22 Jul 2024 16:14:43 -0400
Subject: [PATCH] use destroy_paths() in clip

---
 deps/libbdsg | 2 +-
 src/clip.cpp | 8 ++++++--
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/deps/libbdsg b/deps/libbdsg
index a2e97dbf58e..757896a678e 160000
--- a/deps/libbdsg
+++ b/deps/libbdsg
@@ -1 +1 @@
-Subproject commit a2e97dbf58ef2dddbfac47fd8ea7b6d4f8ff3f26
+Subproject commit 757896a678eb7af7215147ef38cdb9315775dfe0
diff --git a/src/clip.cpp b/src/clip.cpp
index 8b078619fc9..4b0934fde76 100644
--- a/src/clip.cpp
+++ b/src/clip.cpp
@@ -192,7 +192,8 @@ void delete_nodes_and_chop_paths(MutablePathMutableHandleGraph* graph, const uno
     vector<path_handle_t> path_handles;
     graph->for_each_path_handle([&](path_handle_t path_handle) {
             path_handles.push_back(path_handle);
-        });    
+        });
+    vector<path_handle_t> paths_to_destroy;
     for (path_handle_t& path_handle : path_handles) {
 
         string path_name = graph->get_path_name(path_handle);
@@ -257,10 +258,13 @@ void delete_nodes_and_chop_paths(MutablePathMutableHandleGraph* graph, const uno
         }
 
         if (was_chopped) {
-            graph->destroy_path(path_handle);
+            paths_to_destroy.push_back(path_handle);
         }
     }
 
+    // delete the paths
+    graph->destroy_paths(paths_to_destroy);
+
     DeletableHandleGraph* del_graph = dynamic_cast<DeletableHandleGraph*>(graph);
     // delete the edges
     for (edge_t edge : edges_to_delete) {