Seqvars Effects Filters missing fields

[Gregoor]

all the commented out entries are present in the design, but missing in the API. Manuel confirmed that these are still WIP.

Most of them seem to be present here:

varfish-server/backend/seqvars/models.py

Lines 109 to 208 in 8d39e44

	class SeqvarsVariantConsequenceChoice(str, Enum):
	"""The variant consequence."""
	# high impact
	# skipped chromosome_number_variation
	# skipped exon_loss_variant
	#: Frameshift variant
	FRAMESHIFT_VARIANT = "frameshift_variant"
	#: Rare amino acid variant
	RARE_AMINO_ACID_VARIANT = "rare_amino_acid_variant"
	#: Splice acceptor variant
	SPLICE_ACCEPTOR_VARIANT = "splice_acceptor_variant"
	#: Splice donor variant
	SPLICE_DONOR_VARIANT = "splice_donor_variant"
	#: Start lost
	START_LOST = "start_lost"
	#: Stop gained
	STOP_GAINED = "stop_gained"
	#: Stop lost
	STOP_LOST = "stop_lost"
	# skipped transcript_ablation
	# moderate impact
	# 3' UTR truncation
	THREE_PRIME_UTR_TRUNCATION = "3_prime_UTR_truncation"
	# 5' UTR truncation
	FIVE_PRIME_UTR_TRUNCATION = "5_prime_UTR_truncation"
	#: Conservative inframe deletion
	CONSERVATIVE_INFRAME_DELETION = "conservative_inframe_deletion"
	#: Conservative inframe insertion
	CONSERVATIVE_INFRAME_INSERTION = "conservative_inframe_insertion"
	#: Disruptive inframe deletion
	DISRUPTIVE_INFRAME_DELETION = "disruptive_inframe_deletion"
	#: Disruptive inframe insertion
	DISRUPTIVE_INFRAME_INSERTION = "disruptive_inframe_insertion"
	#: Missense variant
	MISSENSE_VARIANT = "missense_variant"
	#: skipped regulatory_region_ablation
	#: Splice region variant
	SPLICE_REGION_VARIANT = "splice_region_variant"
	# skipped TFBS_ablation
	# low impact
	# skipped 5_prime_UTR_premature_start_codon_gain_variant
	#: Initiator codon variant
	INITIATOR_CODON_VARIANT = "initiator_codon_variant"
	#: Start retained
	START_RETAINED = "start_retained"
	#: Stop retained variant
	STOP_RETAINED_VARIANT = "stop_retained_variant"
	#: Synonymous variant
	SYNONYMOUS_VARIANT = "synonymous_variant"
	# modifier
	# skipped 3_prime_UTR_variant
	# skipped 5_prime_UTR_variant
	# skipped coding_sequence_variant
	# skipped conserved_intergenic_variant
	# skipped conserved_intron_variant
	#: Downstream gene variant
	DOWNSTREAM_GENE_VARIANT = "downstream_gene_variant"
	# skipped exon_variant
	# skipped feature_elongation
	# skipped feature_truncation
	# skipped gene_variant
	# skipped intergenic_variant
	#: Intron variant.
	INTRON_VARIANT = "intron_variant"
	# skipped mature_miRNA_variant
	# skipped miRNA
	# skipped NMD_transcript_variant
	#: Non-coding transcript exon variant
	NON_CODING_TRANSCRIPT_EXON_VARIANT = "non_coding_transcript_exon_variant"
	#: Non-coding transcript intron variant
	NON_CODING_TRANSCRIPT_INTRON_VARIANT = "non_coding_transcript_intron_variant"
	#: 5' UTR variant
	FIVE_PRIME_UTR_VARIANT = "5_prime_UTR_variant"
	#: Coding sequence variant
	CODING_SEQUENCE_VARIANT = "coding_sequence_variant"
	# skipped regulatory_region_amplification
	# skipped regulatory_region_variant
	# skipped TF_binding_site_variant
	# skipped TFBS_amplification
	# skipped transcript_amplification
	# skipped transcript_variant
	#: Upstream gene variant
	UPSTREAM_GENE_VARIANT = "upstream_gene_variant"
	#: EXTRA, not directly written by Mehari: 3' UTR variant + exon variant
	THREE_PRIME_UTR_VARIANT_EXON_VARIANT = "3_prime_UTR_variant-exon_variant"
	#: EXTRA, not directly written by Mehari: 5' UTR variant + exon variant
	FIVE_PRIME_UTR_VARIANT_EXON_VARIANT = "5_prime_UTR_variant-exon_variant"
	#: EXTRA, not directly written by Mehari: 3' UTR variant + intron_variant
	THREE_PRIME_UTR_VARIANT_INTRON_VARIANT = "3_prime_UTR_variant-intron_variant"
	#: EXTRA, not directly written by Mehari: 5' UTR variant + intron_variant
	FIVE_PRIME_UTR_VARIANT_INTRON_VARIANT = "5_prime_UTR_variant-intron_variant"

Effect groups I also could not find in the API yet