R-CMD-check.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: R-CMD-check.yaml

permissions: read-all

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - { os: macos-latest, r: "release" }
          - { os: windows-latest, r: "release" }
          - { os: ubuntu-latest, r: "devel", http-user-agent: "release" }
          - { os: ubuntu-latest, r: "release" }
          - { os: ubuntu-latest, r: "oldrel-1" }

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v4

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true

      - name: Install required R packages
        run: |
          Rscript -e 'install.packages(c("magrittr", "usethis", "roxygen2"))'

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::rcmdcheck,covr,lintr,styler
          needs: check

      - name: Set up Python for pre-commit
        uses: actions/setup-python@v5
        with:
          python-version: "3.x"

      - name: Install pre-commit
        run: |
          pip install pre-commit
          pre-commit install

      - name: Run pre-commit hooks
        run: pre-commit run --all-files

      - uses: r-lib/actions/check-r-package@v2
        with:
          upload-snapshots: true
          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

      - name: Run test coverage
        run: Rscript -e 'covr::codecov()'
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

      - name: Run linting
        run: Rscript -e 'lintr::lint_package()'

      - name: Check code formatting with styler
        run: |
          echo "styler::style_pkg(strict = TRUE, scope = 'file', transformers = styler::tidyverse_style(), reindention = FALSE, check_only = TRUE)" | Rscript -