(scenicplus) [gilgolan@localhost Snakemake]$ pip list Package Version ------------------------------------ ----------------- adjustText 1.0.4 aiohttp 3.9.3 aiosignal 1.3.1 anndata 0.10.5.post1 annoy 1.17.3 appdirs 1.4.4 arboreto 0.1.6 argparse-dataclass 2.0.0 array_api_compat 1.5.1 asttokens 2.4.1 attr 0.3.2 attrs 23.2.0 bbknn 1.6.0 beautifulsoup4 4.12.3 bidict 0.23.1 bioservices 1.11.2 blosc2 2.5.1 bokeh 3.4.0 boltons 23.1.1 Bottleneck 1.3.7 Brotli 1.0.9 bs4 0.0.2 cattrs 23.2.3 certifi 2024.2.2 charset-normalizer 3.3.2 click 8.1.7 cloudpickle 3.0.0 colorama 0.4.6 colorlog 6.8.2 conda-inject 1.3.1 ConfigArgParse 1.7 connection_pool 0.0.3 contourpy 1.2.0 ctxcore 0.2.0 cycler 0.12.1 Cython 0.29.37 cytoolz 0.12.3 dask 2024.5.0 dataclasses-json 0.6.4 datrie 0.8.2 decorator 5.1.1 dill 0.3.8 distributed 2024.2.1 docutils 0.20.1 dpath 2.1.6 easydev 0.13.1 et-xmlfile 1.1.0 executing 2.0.1 fastjsonschema 2.19.1 fbpca 1.0 filelock 3.13.1 fonttools 4.50.0 frozendict 2.4.0 frozenlist 1.4.1 fsspec 2024.3.1 future 1.0.0 gensim 4.3.2 geosketch 1.2 gevent 24.2.1 gitdb 4.0.11 GitPython 3.1.42 globre 0.1.5 greenlet 3.0.3 grequests 0.7.0 gseapy 0.10.8 h5py 3.10.0 harmonypy 0.0.9 HeapDict 1.0.1 humanfriendly 10.0 idna 3.6 igraph 0.11.4 imagecodecs 2023.1.23 imageio 2.34.0 immutables 0.20 importlib-metadata 7.0.1 importlib_resources 6.1.2 interlap 0.2.7 intervaltree 3.1.0 ipython 8.22.2 itsdangerous 2.2.0 jedi 0.19.1 Jinja2 3.1.3 joblib 1.3.2 jsonpickle 3.0.3 jsonschema 4.21.1 jsonschema-specifications 2023.12.1 jupyter_core 5.7.2 kaleido 0.2.1 kiwisolver 1.4.5 lazy_loader 0.3 lda 3.0.0 leidenalg 0.10.2 line-profiler 4.1.2 llvmlite 0.42.0 lmdb 1.4.1 locket 1.0.0 loompy 3.0.7 loomxpy 0.4.2 lxml 5.1.0 lz4 4.3.3 MACS2 2.2.9.1 markdown-it-py 3.0.0 MarkupSafe 2.1.5 marshmallow 3.21.1 matplotlib 3.6.3 matplotlib-inline 0.1.6 mdurl 0.1.2 mizani 0.9.3 mkl-fft 1.3.8 mkl-random 1.2.4 mkl-service 2.4.0 msgpack 1.0.8 mudata 0.2.3 multidict 6.0.5 multiprocessing_on_dill 3.5.0a4 mypy-extensions 1.0.0 natsort 8.4.0 nbformat 5.10.3 ncls 0.0.68 ndindex 1.8 networkx 3.2.1 numba 0.59.0 numexpr 2.9.0 numpy 1.26.4 numpy-groupies 0.10.2 openpyxl 3.1.2 packaging 24.0 pandas 1.5.0 parso 0.8.3 partd 1.4.1 patsy 0.5.6 pexpect 4.9.0 pillow 10.2.0 pip 24.0 plac 1.4.3 platformdirs 4.2.0 plotly 5.19.0 plotnine 0.12.4 polars-lts-cpu 0.20.13 progressbar2 4.4.2 prompt-toolkit 3.0.43 protobuf 5.26.0 psutil 5.9.8 ptyprocess 0.7.0 PuLP 2.8.0 pure-eval 0.2.2 py-cpuinfo 9.0.0 pyarrow 15.0.0 pyarrow-hotfix 0.6 pybedtools 0.9.1 pybigtools 0.1.2 pyBigWig 0.3.22 pybiomart 0.2.0 pycistarget 1.0a2 pycisTopic 2.0a0 pyfasta 0.5.2 pygam 0.9.0 Pygments 2.17.2 pynndescent 0.5.11 pyparsing 3.1.2 pyranges 0.0.111 pyrle 0.0.39 pysam 0.22.0 pyscenic 0.12.1+8.gd2309fe PySocks 1.7.1 python-dateutil 2.9.0.post0 python-utils 3.8.2 pytz 2024.1 pyvis 0.3.2 PyYAML 6.0.1 ray 2.9.3 referencing 0.34.0 requests 2.31.0 requests-cache 1.2.0 reretry 0.11.8 rich 13.7.1 rich-argparse 1.4.0 rpds-py 0.18.0 scanorama 1.7.4 scanpy 1.8.2 scatac_fragment_tools 0.1.0 scenicplus 1.0a1 scikit-image 0.22.0 scikit-learn 1.3.2 scipy 1.12.0 scrublet 0.2.3 seaborn 0.13.2 setuptools 69.5.1 sinfo 0.3.4 six 1.16.0 smart-open 6.4.0 smmap 5.0.1 snakemake 8.5.5 snakemake-interface-common 1.17.1 snakemake-interface-executor-plugins 8.2.0 snakemake-interface-report-plugins 1.0.0 snakemake-interface-storage-plugins 3.1.1 sorted-nearest 0.0.39 sortedcontainers 2.4.0 soupsieve 2.5 stack-data 0.6.3 statistics 1.0.3.5 statsmodels 0.14.1 stdlib-list 0.10.0 stopit 1.1.2 suds-community 1.1.2 tables 3.9.2 tabulate 0.9.0 tblib 3.0.0 tenacity 8.2.3 texttable 1.7.0 threadpoolctl 3.4.0 throttler 1.2.2 tifffile 2024.2.12 tmtoolkit 0.12.0 toolz 0.12.1 toposort 1.10 tornado 6.4 tqdm 4.66.2 traitlets 5.14.2 tspex 0.6.3 typing 3.7.4.3 typing_extensions 4.10.0 typing-inspect 0.9.0 tzdata 2023.3 ujson 5.10.0 umap-learn 0.5.5 unicodedata2 15.1.0 url-normalize 1.4.3 urllib3 2.2.1 wcwidth 0.2.13 wheel 0.43.0 wrapt 1.16.0 xlrd 2.0.1 xmltodict 0.13.0 xyzservices 2023.10.1 yarl 1.9.4 yte 1.5.4 zict 3.0.0 zipp 3.18.1 zope.event 5.0 zope.interface 6.2