diff --git a/paper.md b/paper.md index 00297d17..8b137891 100644 --- a/paper.md +++ b/paper.md @@ -1,84 +1 @@ ---- -title: 'Unfold.jl: Regression models for Cognitive Neuroscience' -tags: - - Julia - - EEG - - neuroimaging -authors: - - name: Benedikt V. Ehinger - orcid: 0000-0002-6276-3332 - equal-contrib: false - affiliation: "1, 2" # (Multiple affiliations must be quoted) - -affiliations: - - name: Stuttgart Center for Simulation Science, University of Stuttgart, Germany - index: 1 - - name: Institute for Visualization and Interactive Systems, University of Stuttgart, Germany - index: 2 -date: 06 November 2023 -bibliography: paper.bib - ---- - -# Summary - - -Overlapping event responses, (non-)linear effects and confounds, outliers, item effects - all pretty common features limiting the application of neuroimaging methods. Here, we focus on EEG without loss of generality. Especially event-related potentials in naturalistic paradigms (e.g. ET+EEG, VR+EEG, MoBi) but also classical paradigms (evidence Integration, language, even oddball tasks) require such techniques. - -Unfold.jl implements the model fitting based on the popular wilkinson~formula+syntax. It is feature-par with matlab-unfold. In addition it offers speed-improvements (up to 100x on GPUs) and extensions for outlier-robust fits, back2back regression, and mixed models. - -While implemented in Julia, it is straight forward to also call from Python and tutorials are available. - - - -# Statement of need - - - -# Mathematics - -Single dollars ($) are required for inline mathematics e.g. $f(x) = e^{\pi/x}$ - -Double dollars make self-standing equations: - -$$\Theta(x) = \left\{\begin{array}{l} -0\textrm{ if } x < 0\cr -1\textrm{ else} -\end{array}\right.$$ - -You can also use plain \LaTeX for equations -\begin{equation}\label{eq:fourier} -\hat f(\omega) = \int_{-\infty}^{\infty} f(x) e^{i\omega x} dx -\end{equation} -and refer to \autoref{eq:fourier} from text. - -# Citations - -Citations to entries in paper.bib should be in -[rMarkdown](http://rmarkdown.rstudio.com/authoring_bibliographies_and_citations.html) -format. - -If you want to cite a software repository URL (e.g. something on GitHub without a preferred -citation) then you can do it with the example BibTeX entry below for @fidgit. - -For a quick reference, the following citation commands can be used: -- `@author:2001` -> "Author et al. (2001)" -- `[@author:2001]` -> "(Author et al., 2001)" -- `[@author1:2001; @author2:2001]` -> "(Author1 et al., 2001; Author2 et al., 2002)" - -# Figures - -Figures can be included like this: -![Caption for example figure.\label{fig:example}](figure.png) -and referenced from text using \autoref{fig:example}. - -Figure sizes can be customized by adding an optional second parameter: -![Caption for example figure.](figure.png){ width=20% } - -# Acknowledgements - -We acknowledge contributions from Brigitta Sipocz, Syrtis Major, and Semyeong -Oh, and support from Kathryn Johnston during the genesis of this project. - -# References