Change to allow image access from databroker #11

docs/user/how-to/run-scan.rst

@@ -1,8 +1,13 @@
 Running a scan
 ==================
 
-* Start the interactive bluesky environment. This is best done within the same network as the docker-compose environment which can be achieved by running: :code:`docker run --net tomoscan_default -it tomoscan`
-* Start the phoebus screen to monitor the scan's progress. Navigate to the display folder and run :code:`./startOvervirew.sh`
+* Start the interactive bluesky environment. It is important to mount the output directory and run the container within the same network as the docker-compose environment. This can be achieved by running:
+
+.. code-block:: bash
+
+    docker run --net tomoscan_default --mount type=bind,source="$(pwd)"/data,target=/out -it tomoscan
+
+* Start the phoebus screen to monitor the scan's progress. Navigate to the display folder and run :code:`./startOverview.sh`
 
 There are two scan modes which are explained below. Outputs from the scan are saved to the data directory.
 

src/tomoscan/ophyd_inter_setup.py

@@ -33,7 +33,7 @@ class MyDetector(SingleTrigger, AreaDetector):
         MyHDF5Plugin,
         "HDF1:",
         write_path_template="/out/%Y/%m/%d/",
-        read_path_template="/data/%Y/%m/%d/",  # Where bluesky container mount data
+        read_path_template="/out/%Y/%m/%d/",  # Where bluesky container mount data
     )
 
 
@@ -114,6 +114,8 @@ def passive_scan(detectors, motor, start, stop, steps, adStatus, pulse_ID):
 det.hdf1.create_directory.put(-5)
 det.hdf1.warmup()
 
+det.hdf1.kind = 3  # config | normal, required to include images in run documents
+
 det.cam.stage_sigs["image_mode"] = "Multiple"
 det.cam.stage_sigs["acquire_time"] = 0.05
 det.cam.stage_sigs["num_images"] = 1