In fv3atm: convert GFS DDTs from blocked data structures to contiguous arrays

cmake/Intel.cmake

@@ -20,7 +20,8 @@ endif()
 
 if(DEBUG)
     add_definitions(-DDEBUG)
-    set(CMAKE_Fortran_FLAGS_DEBUG "${CMAKE_Fortran_FLAGS_DEBUG} -O0 -check -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -ftrapuv -init=snan,arrays")
+    #set(CMAKE_Fortran_FLAGS_DEBUG "${CMAKE_Fortran_FLAGS_DEBUG} -O0 -check -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -ftrapuv -init=snan,arrays")
+    set(CMAKE_Fortran_FLAGS_DEBUG "${CMAKE_Fortran_FLAGS_DEBUG} -O0 -check -check noarg_temp_created -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -ftrapuv -init=snan,arrays")
     set(CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS_DEBUG} -O0 -ftrapuv")
 else()
     if(FASTER)

tests/fv3_conf/compile_slurm.IN_gaea

@@ -7,6 +7,7 @@
 #SBATCH --partition=eslogin_c5
 #SBATCH --nodes=1
 #SBATCH --ntasks-per-node=8
+#SBATCH --mem-per-cpu=4G
 #SBATCH --time=180
 #SBATCH --job-name="@[JBNME]"
 

tests/logs/OpnReqTests_control_p8_hera.log

@@ -1,9 +1,9 @@
-Mon Aug  5 13:20:26 UTC 2024
+Wed Aug  7 16:04:22 UTC 2024
 Start Operation Requirement Test
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_bit_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_402797/bit_base_bit_base
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_bit_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3245717/bit_base_bit_base
 Checking test bit_base results ....
 Moving baseline bit_base files ....
  Moving sfcf000.nc .........OK
@@ -51,14 +51,14 @@ Moving baseline bit_base files ....
  Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
  Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
 
-  0: The total amount of wall time                        = 275.232912
-  0: The maximum resident set size (KB)                   = 1454960
+  0: The total amount of wall time                        = 291.553157
+  0: The maximum resident set size (KB)                   = 1432740
 
 Test bit_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_dbg_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_402797/dbg_base_dbg_base
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_dbg_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3245717/dbg_base_dbg_base
 Checking test dbg_base results ....
 Moving baseline dbg_base files ....
  Moving sfcf000.nc .........OK
@@ -106,14 +106,14 @@ Moving baseline dbg_base files ....
  Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
  Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
 
-  0: The total amount of wall time                        = 990.929727
-  0: The maximum resident set size (KB)                   = 1452048
+  0: The total amount of wall time                        = 978.453839
+  0: The maximum resident set size (KB)                   = 1404508
 
 Test dbg_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_402797/dcp_dcp
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3245717/dcp_dcp
 Checking test dcp results ....
  Comparing sfcf000.nc .....USING NCCMP......OK
  Comparing sfcf021.nc .....USING NCCMP......OK
@@ -160,14 +160,14 @@ Checking test dcp results ....
  Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
  Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
 
-  0: The total amount of wall time                        = 249.842884
-  0: The maximum resident set size (KB)                   = 1447064
+  0: The total amount of wall time                        = 250.835851
+  0: The maximum resident set size (KB)                   = 1418368
 
 Test dcp PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_402797/mpi_mpi
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3245717/mpi_mpi
 Checking test mpi results ....
  Comparing sfcf000.nc .....USING NCCMP......OK
  Comparing sfcf021.nc .....USING NCCMP......OK
@@ -214,14 +214,14 @@ Checking test mpi results ....
  Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
  Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
 
-  0: The total amount of wall time                        = 251.717479
-  0: The maximum resident set size (KB)                   = 1430488
+  0: The total amount of wall time                        = 251.336453
+  0: The maximum resident set size (KB)                   = 1419812
 
 Test mpi PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_402797/rst_rst
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3245717/rst_rst
 Checking test rst results ....
  Comparing sfcf000.nc .....USING NCCMP......OK
  Comparing sfcf021.nc .....USING NCCMP......OK
@@ -268,14 +268,14 @@ Checking test rst results ....
  Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
  Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
 
-  0: The total amount of wall time                        = 250.675414
-  0: The maximum resident set size (KB)                   = 1431300
+  0: The total amount of wall time                        = 250.225330
+  0: The maximum resident set size (KB)                   = 1419120
 
 Test rst PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_402797/std_base_std_base
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3245717/std_base_std_base
 Checking test std_base results ....
 Moving baseline std_base files ....
  Moving sfcf000.nc .........OK
@@ -323,14 +323,14 @@ Moving baseline std_base files ....
  Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
  Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
 
-  0: The total amount of wall time                        = 248.017536
-  0: The maximum resident set size (KB)                   = 1436404
+  0: The total amount of wall time                        = 251.764603
+  0: The maximum resident set size (KB)                   = 1418912
 
 Test std_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_402797/thr_thr
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3245717/thr_thr
 Checking test thr results ....
  Comparing sfcf000.nc .....USING NCCMP......OK
  Comparing sfcf021.nc .....USING NCCMP......OK
@@ -377,11 +377,11 @@ Checking test thr results ....
  Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
  Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
 
-  0: The total amount of wall time                        = 249.324976
-  0: The maximum resident set size (KB)                   = 1431388
+  0: The total amount of wall time                        = 250.616791
+  0: The maximum resident set size (KB)                   = 1405864
 
 Test thr PASS
 
 OPERATION REQUIREMENT TEST WAS SUCCESSFUL
-Mon Aug  5 14:26:37 UTC 2024
-Elapsed time: 01h:06m:13s. Have a nice day!
+Wed Aug  7 17:12:51 UTC 2024
+Elapsed time: 01h:08m:29s. Have a nice day!

tests/logs/OpnReqTests_cpld_control_nowave_noaero_p8_hera.log

@@ -1,9 +1,9 @@
-Mon Aug  5 20:25:41 UTC 2024
+Wed Aug  7 14:58:27 UTC 2024
 Start Operation Requirement Test
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_dbg_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3648314/dbg_base_dbg_base
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_dbg_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1523760/dbg_base_dbg_base
 Checking test dbg_base results ....
 Moving baseline dbg_base files ....
  Moving sfcf021.tile1.nc .........OK
@@ -66,14 +66,14 @@ Moving baseline dbg_base files ....
  Moving RESTART/iced.2021-03-23-21600.nc .........OK
  Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK
 
-  0: The total amount of wall time                        = 1456.394419
-  0: The maximum resident set size (KB)                   = 1531368
+  0: The total amount of wall time                        = 1347.758320
+  0: The maximum resident set size (KB)                   = 1508348
 
 Test dbg_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3648314/rst_rst
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1523760/rst_rst
 Checking test rst results ....
  Comparing sfcf021.tile1.nc .....USING NCCMP......OK
  Comparing sfcf021.tile2.nc .....USING NCCMP......OK
@@ -135,14 +135,14 @@ Checking test rst results ....
  Comparing RESTART/iced.2021-03-23-21600.nc .....USING NCCMP......OK
  Comparing RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .....USING NCCMP......OK
 
-  0: The total amount of wall time                        = 434.948106
-  0: The maximum resident set size (KB)                   = 1537108
+  0: The total amount of wall time                        = 427.699439
+  0: The maximum resident set size (KB)                   = 1502940
 
 Test rst PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3648314/std_base_std_base
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1523760/std_base_std_base
 Checking test std_base results ....
 Moving baseline std_base files ....
  Moving sfcf021.tile1.nc .........OK
@@ -205,11 +205,11 @@ Moving baseline std_base files ....
  Moving RESTART/iced.2021-03-23-21600.nc .........OK
  Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK
 
-  0: The total amount of wall time                        = 436.362270
-  0: The maximum resident set size (KB)                   = 1517024
+  0: The total amount of wall time                        = 461.709298
+  0: The maximum resident set size (KB)                   = 1511784
 
 Test std_base PASS
 
 OPERATION REQUIREMENT TEST WAS SUCCESSFUL
-Mon Aug  5 22:04:47 UTC 2024
-Elapsed time: 01h:39m:08s. Have a nice day!
+Wed Aug  7 16:04:22 UTC 2024
+Elapsed time: 01h:05m:56s. Have a nice day!

tests/logs/OpnReqTests_regional_control_hera.log

@@ -1,9 +1,9 @@
-Mon Aug  5 17:40:12 UTC 2024
+Wed Aug  7 12:28:17 UTC 2024
 Start Operation Requirement Test
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_bit_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1711172/bit_base_bit_base
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_bit_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_538515/bit_base_bit_base
 Checking test bit_base results ....
 Moving baseline bit_base files ....
  Moving dynf000.nc .........OK
@@ -15,14 +15,14 @@ Moving baseline bit_base files ....
  Moving NATLEV.GrbF00 .........OK
  Moving NATLEV.GrbF06 .........OK
 
-  0: The total amount of wall time                        = 1408.629188
-  0: The maximum resident set size (KB)                   = 768992
+  0: The total amount of wall time                        = 1405.955778
+  0: The maximum resident set size (KB)                   = 767568
 
 Test bit_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1711172/dcp_dcp
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_538515/dcp_dcp
 Checking test dcp results ....
  Comparing dynf000.nc .....USING NCCMP......OK
  Comparing dynf006.nc .....USING NCCMP......OK
@@ -33,14 +33,14 @@ Checking test dcp results ....
  Comparing NATLEV.GrbF00 .....USING CMP......OK
  Comparing NATLEV.GrbF06 .....USING CMP......OK
 
-  0: The total amount of wall time                        = 2173.644662
-  0: The maximum resident set size (KB)                   = 708900
+  0: The total amount of wall time                        = 2160.154552
+  0: The maximum resident set size (KB)                   = 703612
 
 Test dcp PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1711172/std_base_std_base
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_538515/std_base_std_base
 Checking test std_base results ....
 Moving baseline std_base files ....
  Moving dynf000.nc .........OK
@@ -52,14 +52,14 @@ Moving baseline std_base files ....
  Moving NATLEV.GrbF00 .........OK
  Moving NATLEV.GrbF06 .........OK
 
-  0: The total amount of wall time                        = 2162.607714
-  0: The maximum resident set size (KB)                   = 716328
+  0: The total amount of wall time                        = 2253.393184
+  0: The maximum resident set size (KB)                   = 716020
 
 Test std_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1711172/thr_thr
+baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_538515/thr_thr
 Checking test thr results ....
  Comparing dynf000.nc .....USING NCCMP......OK
  Comparing dynf006.nc .....USING NCCMP......OK
@@ -70,11 +70,11 @@ Checking test thr results ....
  Comparing NATLEV.GrbF00 .....USING CMP......OK
  Comparing NATLEV.GrbF06 .....USING CMP......OK
 
-  0: The total amount of wall time                        = 2154.653116
-  0: The maximum resident set size (KB)                   = 707252
+  0: The total amount of wall time                        = 2176.355099
+  0: The maximum resident set size (KB)                   = 724868
 
 Test thr PASS
 
 OPERATION REQUIREMENT TEST WAS SUCCESSFUL
-Mon Aug  5 20:20:41 UTC 2024
-Elapsed time: 02h:40m:29s. Have a nice day!
+Wed Aug  7 14:58:26 UTC 2024
+Elapsed time: 02h:30m:10s. Have a nice day!