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Update README.md to point to ufs-srweather-app wiki page and to (#232)
notify users that the workflow must be run with the app and not standalone.
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JulieSchramm
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| # Regional workflow | ||
| # Regional Workflow | ||
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| **The regional workflow in this repository can no longer be run in a stand-alone configuration. To clone the end-to-end system, build the code, and run the workflow, see:** | ||
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| This is the community\_develop branch of the regional\_workflow used to run the stand-alone regional (SAR) version of FV3. | ||
| https://github.com/ufs-community/ufs-srweather-app/wiki | ||
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| ## Check out and build the regional workflow: | ||
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| 1. Check out the regional workflow external components: | ||
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| `./manage_externals/checkout_externals` | ||
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| This step will checkout EMC\_post, NEMSfv3gfs and its submodules, UFS\_UTILS\_chgres\_grib2 and UFS\_UTILS\_develop in the sorc directory. | ||
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| 2. Build the utilities, post and FV3: | ||
| ``` | ||
| cd sorc | ||
| ./build_all.sh >& out.build_all & | ||
| ``` | ||
| NOTE: You must *not* have the conda module loaded for the build to succeed. | ||
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| This step will also copy the executables to the `exec` directory and link the fix files. | ||
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| 4. Create a `config.sh` file in the `ush` directory (see Users Guide). | ||
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| 5. Set up your python environment; you will need python3, and it must have the 'PyYAML', 'Jinja2', and 'f90nml' packages installed | ||
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| On some platforms this environment is already available with a few commands;For example, on Jet/Hera: | ||
| ``` | ||
| cd ush | ||
| module use -a /contrib/miniconda3/modulefiles | ||
| module load miniconda3 | ||
| conda activate regional_workflow | ||
| ``` | ||
| on Cheyenne: | ||
| ``` | ||
| cd ush | ||
| ncar_pylib /glade/p/ral/jntp/UFS_CAM/ncar_pylib_20200427 | ||
| ``` | ||
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| 6. Generate a workflow: | ||
| ``` | ||
| generate_FV3SAR_wflow.sh | ||
| ``` | ||
| This will create an experiment directory in `$EXPT_SUBDIR` with a rocoto xml file FV3SAR_wflow.xml. It will also output information specific to your experiment. | ||
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| 7. Launch and monitor the workflow: | ||
| ``` | ||
| module load rocoto/1.3.1` | ||
| cd $EXPTDIR | ||
| rocotorun -w FV3SAR_wflow.xml -d FV3SAR_wflow.db -v 10 | ||
| rocotostat -w FV3SAR_wflow.xml -d FV3SAR_wflow.db -v 10 | ||
| ``` | ||
| 8. For automatic resubmission of the workflow, the following can be added to your crontab: | ||
| ``` | ||
| */3 * * * * cd $EXPTDIR && ./launch_FV3SAR_wflow.sh | ||
| ``` | ||
| This repository contains the regional workflow used to run the end-to-end UFS Short-Range Weather App. | ||
| This system includes pre-processing tasks, the regional UFS Weather Model, and the Unified Post Processor (UPP). | ||
| The workflow is a component of the UFS Short-Range Weather App umbrella repository. |