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The example below use the pbmc3k cellranger output files from the 10x website.
First, download the files with the command:: rsync -Lavzp genome-test.gi.ucsc.edu::cells/datasets/pbmc3kCellranger/ ./pbmc3kCellranger/ --progress
When I try running the rsync on our linux cluster, it just hangs indefinitely and times out:
$ rsync -Lavzp genome-test.gi.ucsc.edu::cells/datasets/pbmc3kCellranger/ ./pbmc3kCellranger/ --progress
rsync: [Receiver] failed to connect to genome-test.gi.ucsc.edu (128.114.198.32): Connection timed out (110)
rsync: [Receiver] failed to connect to genome-test.gi.ucsc.edu (2607:f5f0:136:1::26): Network is unreachable (101)
rsync error: error in socket IO (code 10) at clientserver.c(138) [Receiver=3.2.3]
When I try running it on my mac workstation, I get a different error:
docs/cellranger.rst reads in part:
When I try running the rsync on our linux cluster, it just hangs indefinitely and times out:
When I try running it on my mac workstation, I get a different error:
I suspect this same issue would also affect the instructions in docs/scanpy.rst and docs/seurat.rst
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