v1.2

Fixed the haplotag function to use "ID=PS" to find the header. Added the exception handling of substr when grabbing the corresponding SNP from read.

V1.1

Haplotag add --log and -sv-file parameters. --log can produce an additional log file records the result of each read. --sv-file allows users to use phased SNP VCF and phased SV VCF to determine haplotype of each read.
longphase haplotag -s phased_snp.vcf -b alignment.bam -t 32 --sv-file phased_sv.vcf

v1.0

LongPhase now supports VCF in gz and outputs haplotype-tagging reads in BAM via haplotag.
longphase haplotag -s snp.vcf -b alignment.bam -t 32