diff --git a/README.md b/README.md index de63a8e..f4737c8 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # Simulating virus evolution and epidemiology -![](figures/antigen.png) +## Introduction Antigen implements an SIR epidemiological model where hosts in a population are infected with viruses that have distinct antigenic phenotypes. Hosts make contacts trasmitting viruses and also @@ -16,8 +16,12 @@ Additionally, population structure is implemented in terms of discrete demes. C deme occur through standard mass action, while contacts between demes occur at some fraction of the rate of within deme contact. +![](figures/antigen.png) + ------------------------------------------- +## Running + I haven't made a makefile. The program can be compiled with: javac *.java