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Make a fastq_trunc_maxee_rate option for fastx_filter #587

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torognes opened this issue Jan 9, 2025 · 1 comment

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torognes commented Jan 9, 2025

Truncate reads to have a maximum ee rate

torognes changed the title ~~Make a fastq_trunc_maxee_rate option~~ Make a fastq_trunc_maxee_rate option for fastx_filter

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torognes commented Jan 9, 2025

... and perhaps a similar fastq_trunc_maxee option?

These should result in the longest possible sequence within the maxee or maxee_rate limits.

There are already options to discard sequences outside these limits, but options to truncate them seems to be missing.

frederic-mahe added the enhancement label

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