A fork of Futia et al. (2024), extended with the patter algorithms

Learning resources for users of the `patter` R package

a helper package for pomp

Create Multivariate Autoregressive State-Space Models with the MARSS R package

Himes Boor, G.K., T.L. McGuire, A.J. Warlick, R.L. Taylor, S.J. Converse, J.R. McClung, A.D. Stephens. 2022. Estimating reproductive rates and juvenile survival when offspring ages are uncertain: a novel multievent mark-recapture model applied to an endangered beluga whale population. Methods in Ecology and Evolution

Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan

Modeling the COVID-19 Infection Rates by Regime Switching Unobserved Components Models

An R package for fitting state-space models to repeated measures of multiple individuals with covariates

State-space models for statistical mortality projections

An age-based state-space stock assessment model for the stock of American plaice on the Grand Bank of Newfoundland.

R package pmhtutorial available from CRAN.

Source code and data for the tutorial: "Getting started with particle Metropolis-Hastings for inference in nonlinear models"

Zipkin, E.F., Sillett, T.S., Grant, E.H.C., Chandler, R.B., and Royle, J.A. (2014) Inferences from count data using multi-state population models: a comparison to capture-recapture approaches. Ecology and Evolution. 4: 417-426.