A tool for harvesting media files from Open Access articles for upload into Wikimedia Commons

A framework for keeping biomedical text mining result up-to-date

Provides link of the full-text article upon giving PubMed's PMID

MediaWiki bot to upload content to Wikimedia projects and update corresponding citations on Wikipedia.

NLP framework in python for entity recognition and relationship extraction

A library that facilitates the process of building a machine learning pipeline using PubMed as a data source

This script reads the exported (.csv|.txt) files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish databases and turns each of them into a new file with an unique format. This script will ignore duplicated records.

This script eliminates the duplicated records from formatted .xlsx files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish. Is mandatory that there be at least 2 different files from 2 different databases.

This script reads the exported (.csv|.txt) files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish databases and turns each of them into a new file with an unique format. This script will ignore duplicated records.

This script eliminates the duplicated records from formatted .xlsx files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish. Is mandatory that there be at least 2 different files from 2 different databases.

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

ScrapeMed: Data scraping for PubMed Central.

Open Access PDF harvester

Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!

PyMedX is a Python library that provides access to PubMed.

📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

A Python tool for systematic review scraping PubMed articles based on specified search queries.