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precizer is a CLI application for verifying file integrity after synchronization. The program recursively traverses directories, creates a database of files with their checksums, and performs comparisons.
OSSEC is an Open Source Host-based Intrusion Detection System that performs log analysis, file integrity checking, policy monitoring, rootkit detection, real-time alerting and active response.
FastFileCheck is a fast, multithreaded file integrity checker for Linux, using parallel processing and a lightweight database to quickly hash and verify large volumes of files.