From 4542d1cdff326b4968782a3a6de2f2198594eb64 Mon Sep 17 00:00:00 2001
From: Tom Kurowski <t.j.kurowski@cranfield.ac.uk>
Date: Fri, 16 Feb 2024 18:36:20 +0000
Subject: [PATCH] Allow for missing ('.') values for GQ genotype subfield

---
 src/variantsite.py | 2 --
 1 file changed, 2 deletions(-)

diff --git a/src/variantsite.py b/src/variantsite.py
index a3dfcb2..f22191c 100644
--- a/src/variantsite.py
+++ b/src/variantsite.py
@@ -75,8 +75,6 @@ def _parse_genotype_field(self, call: str, genotype_format: List[str]):
             field: value
             for field, value in zip(genotype_format, call.split(':'))
         }
-        if 'GQ' in parsed_call:
-            parsed_call['GQ'] = int(parsed_call['GQ'])
         return parsed_call
 
     def _parse_info(self, info: str):