DESCRIPTION

Package: msbrowser
Title: Viz tool for xcms peak picking parameter optimisation
Version: 0.99.1
Authors@R: 
    person(given = "Torben",
           family = "Kimhofer",
           role = c("aut", "cre"),
           email = "torben.kimhofer@murdoch.edu.au",
           comment = c(ORCID = "0000-0001-7158-9930"))
Description: A user-friendly browser application for fast and easy xcms parameter testing, designed to optimise peak picking for GC-MS and LC-MS experiments. The application outputs experiment summary statistics such as total/extracted ion chromatograms and enables the user to gain insight into the data structure and the effects different xcms parameter sets have on peak picking performance. Resulting LC/GC feature list and plots can be used evaluatwhich parameters work best for the respective spectral data. MSbrowser runs on a macOS, Windows and Linux.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends:
  shiny  (>= 1.4)
Imports:
  colorRamps  (>= 2.3),
  DT  (>= 0.1),
  ggplot2  (>= 3.2),
  magrittr  (>= 1.5),
  plotly  (>= 4.9),
  plyr  (>= 1.8),
  reshape2  (>= 1.4),
  shinyBS  (>= 0.6),
  shinybusy  (>= 0.2),
  shinycssloaders  (>= 0.2),
  shinyWidgets  (>= 0.5),
  stats  (>= 1.4),
  utils,
  xcms  (>= 3.6)
Suggests: knitr, lcmsData
RoxygenNote: 7.1.1
StagedInstall: yes
VignetteBuilder: knitr
biocViews: Metabolomics, MassSpectrometry, Preprocessing, Cheminformatics
URL: https://github.com/tkimhofer/msbrowser
BugReports: https://github.com/tkimhofer/msbrowser/issues