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Question: Can DC1 be well correlated to PC1? #39

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katsikora opened this issue Sep 10, 2020 · 0 comments
Open

Question: Can DC1 be well correlated to PC1? #39

katsikora opened this issue Sep 10, 2020 · 0 comments

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@katsikora
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Dear Devs,

I have applied destiny::DiffusionMap to one of our internal datasets, providing the Seurat "data" slot normalized in a standard way as input (log2 (normalized counts + pseudocount)).

When I plot DC1 against PC1 on this dataset, I obtain:

PC1_vs_DC1

Does this say anything particular about the dataset?

Thanks in advance for any hints,

Best,

Katarzyna
@katsikora katsikora changed the title Question: Can DC1 be near-identical to PC1? Question: Can DC1 be well correlated to PC1? Sep 10, 2020
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