From 9bd5e56b82406fc5bc237799718ef62fad411aa3 Mon Sep 17 00:00:00 2001 From: clegendre Date: Thu, 26 Jan 2023 16:14:19 -0700 Subject: [PATCH] removed typo --- prep_vcfs_somatic/prep_vcf_somatic_functions.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/prep_vcfs_somatic/prep_vcf_somatic_functions.sh b/prep_vcfs_somatic/prep_vcf_somatic_functions.sh index 66ab62f..531e6f0 100755 --- a/prep_vcfs_somatic/prep_vcf_somatic_functions.sh +++ b/prep_vcfs_somatic/prep_vcf_somatic_functions.sh @@ -431,7 +431,7 @@ function phasing_consecutive_variants_in_strelka2(){ local CPUS=$4 echo "in ${FUNCNAME}: ${VCF} and BAM file is ${BAM}" 1>&2 - echo "## Phasing 0bp-apart consecutives variants ..." 1>&2 + echo "## Phasing 0bp-apart consecutive variants ..." 1>&2 mycmd="bash ${DIR_PATH_TO_SCRIPTS}/strelka2/strelka2.phasing_consecutives_variants_as_blocs.sh ${VCF} ${BAM} ${TUMOR_SNAME} ${CPUS}" echo ${mycmd} 1>&2 ;