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popular_deps.csv
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dep
ABAEnrichment
abseqR
ADAMgui
adductomicsR
ADImpute
affycoretools
AgiMicroRna
AllelicImbalance
AlphaBeta
AlpsNMR
amplican
ANCOMBC
animalcules
AnVILBilling
APAlyzer
ArrayExpressHTS
arrayMvout
arrayQualityMetrics
artMS
ASpediaFI
ASpli
atSNP
AUCell
autonomics
bambu
BANDITS
basecallQC
BatchQC
BayesSpace
BEARscc
BEclear
benchdamic
BgeeCall
BgeeDB
bigmelon
bigPint
bioCancer
BioMM
biomvRCNS
BioNERO
BioNetStat
BioPlex
BioTIP
biotmle
biovizBase
biscuiteer
bnbc
bnem
BPRMeth
brainflowprobes
BrainSABER
branchpointer
bsseq
BubbleTree
CAFE
CAGEfightR
cageminer
CAGEr
CAMERA
canceR
CATALYST
cBioPortalData
ccmap
celaref
celda
CellBarcode
cellbaseR
CelliD
cellmigRation
CEMiTool
censcyt
CeTF
CexoR
ChAMP
ChIC
Chicago
chimeraviz
chipenrich
ChIPexoQual
ChIPseeker
ChIPXpress
ChromSCape
chromVAR
cicero
CIMICE
CiteFuse
CluMSID
clusterProfiler
clustifyr
cmapR
CNVfilteR
CNVgears
cnvGSA
CNViz
CNVRanger
COCOA
combi
coMET
COMPASS
ComPrAn
conclus
condiments
CONFESS
consensusDE
consensusOV
contiBAIT
conumee
CopyNumberPlots
CopywriteR
coRdon
CoreGx
corral
cosmosR
CRISPRseek
crisprseekplus
crossmeta
csdR
cTRAP
cummeRbund
cyanoFilter
CyTOFpower
CytoGLMM
cytoKernel
CytoML
CytoTree
DaMiRseq
DAPAR
dasper
dce
ddPCRclust
debrowser
decompTumor2Sig
deconvR
DeepBlueR
DeepPINCS
DEFormats
DegNorm
derfinder
derfinderPlot
DEScan2
destiny
DEWSeq
DExMA
DIAlignR
diffcoexp
diffcyt
diffloop
diffuStats
diggit
Dino
DiscoRhythm
DMCFB
DMRcate
DMRforPairs
dmrseq
DominoEffect
Doscheda
DOSE
DrugVsDisease
DSS
easier
eegc
EGAD
EGSEA
ELMER
EnhancedVolcano
EnMCB
ENmix
enrichplot
enrichTF
epialleleR
epigraHMM
epihet
epiNEM
esATAC
EventPointer
FamAgg
famat
fastLiquidAssociation
fCCAC
fcoex
fedup
ffpe
fgsea
FitHiC
flagme
flowcatchR
flowCut
flowDensity
flowGraph
FlowSOM
flowStats
flowVS
flowWorkspace
fobitools
FRASER
funtooNorm
GAPGOM
GARS
GCSscore
GDCRNATools
gemini
genefu
GeneGeneInteR
geneplast
GENESIS
GeneStructureTools
GeneTonic
geneXtendeR
genomation
GenomicDistributions
genomicInstability
GenomicInteractions
GenomicOZone
GenomicSuperSignature
GenomicTuples
GenVisR
GeoDiff
GEOexplorer
GEOmetadb
GeomxTools
GEOquery
ggbio
ggcyto
ggmsa
GISPA
GladiaTOX
glmSparseNet
GmicR
GNET2
GOTHiC
gpart
granulator
GRmetrics
GSALightning
gsean
GUIDEseq
Gviz
GWAS.BAYES
GWASTools
gwasurvivr
GWENA
h5vc
HiCcompare
HiCDCPlus
HMMcopy
HPAStainR
HPiP
iCARE
iCheck
iCNV
ideal
iGC
igvR
imcRtools
ImmuneSpaceR
infinityFlow
intansv
InterCellar
inveRsion
iPath
IPO
IRISFGM
ISAnalytics
ivygapSE
karyoploteR
KinSwingR
kissDE
KnowSeq
LinkHD
lipidr
lisaClust
LOBSTAHS
loci2path
LOLA
LowMACA
lumi
LymphoSeq
M3Drop
m6Aboost
Maaslin2
MACPET
maftools
MAGAR
MAGeCKFlute
MAI
MAIT
maPredictDSC
maser
MAST
MatrixQCvis
mBPCR
MCbiclust
mCSEA
MEAL
MEAT
Melissa
meshes
MesKit
metabCombiner
metabolomicsWorkbenchR
MetaboSignal
MetaCyto
metagene
metagene2
metaMS
metaseqR2
metavizr
MetaVolcanoR
methimpute
methInheritSim
methrix
MethylAid
methylCC
methylclock
methylGSA
methylInheritance
methylKit
MethylMix
methylscaper
methylSig
methylumi
microbiome
microbiomeDASim
microbiomeExplorer
microbiomeMarker
MicrobiomeProfiler
MicrobiotaProcess
midasHLA
MIGSA
MIMOSA
mina
MineICA
minfi
MinimumDistance
MIRA
miRLAB
miRSM
miRspongeR
mirTarRnaSeq
missMethyl
mistyR
MLSeq
MMAPPR2
MMUPHin
mnem
MODA
ModCon
MoonlightR
motifbreakR
MotifDb
MouseFM
msgbsR
msImpute
MSnID
MSPrep
msqrob2
MSstats
MSstatsConvert
MSstatsLiP
MSstatsPTM
MSstatsQC
MSstatsQCgui
MSstatsSampleSize
MSstatsTMT
multicrispr
multiGSEA
multiHiCcompare
multiSight
MungeSumstats
muscat
musicatk
mygene
myvariant
NADfinder
NanoMethViz
nanotatoR
NanoTube
nearBynding
Nebulosa
nempi
netboost
netboxr
netOmics
NetSAM
netSmooth
ngsReports
NoRCE
NormalyzerDE
nullranges
NxtIRFcore
ODER
omicRexposome
OMICsPCA
OncoSimulR
oneSENSE
openCyto
openPrimeR
openPrimeRui
OpenStats
optimalFlow
ORFhunteR
ORFik
orthogene
OUTRIDER
pairkat
parglms
PathoStat
pathVar
pcaExplorer
PDATK
PeacoQC
pepStat
PERFect
PFP
phantasus
PharmacoGx
phemd
phenoTest
PhyloProfile
phyloseq
Pi
piano
Pigengene
PING
pipeComp
plotgardener
plotGrouper
PoDCall
POMA
POWSC
PPInfer
pram
prebs
preciseTAD
PrecisionTrialDrawer
primirTSS
PrInCE
proActiv
proBatch
profileplyr
pRoloc
pRolocGUI
Prostar
psichomics
psygenet2r
ptairMS
PureCN
Pviz
pwOmics
qckitfastq
QFeatures
qrqc
qsea
qsmooth
quantro
QuartPAC
R3CPET
r3Cseq
RadioGx
rBiopaxParser
RCAS
RcisTarget
RCM
Rcwl
RcwlPipelines
ReactomeContentService4R
ReactomeGraph4R
ReactomePA
reconsi
recount
recount3
recountmethylation
RegEnrich
regionReport
regutools
REMP
ReportingTools
rexposome
rfaRm
rfPred
RGMQL
RiboCrypt
RiboDiPA
RiboProfiling
RImmPort
RIPAT
RITAN
RLSeq
RNAAgeCalc
RNAmodR
RNAmodR.AlkAnilineSeq
RNAmodR.ML
RNAmodR.RiboMethSeq
RNASeqR
RnBeads
RPA
Rqc
rrvgo
RTCGA
RTCGAToolbox
RTN
RTNduals
RTNsurvival
Rtreemix
rTRMui
rWikiPathways
sangeranalyseR
scAlign
SCAN.UPC
scanMiR
scanMiRApp
scAnnotatR
SCATE
scBFA
scCB2
scClassifR
scClassify
scDataviz
scDblFinder
scds
scGPS
schex
scMAGeCK
scMerge
scmeth
SCnorm
scone
scp
scPCA
scruff
scTensor
scTGIF
scTreeViz
segmenter
seq2pathway
seqsetvis
SeqVarTools
sesame
SEtools
sevenbridges
sevenC
shinyepico
shinyMethyl
SIAMCAT
signatureSearch
SingleCellSignalR
singleCellTK
SingleMoleculeFootprinting
singscore
SISPA
skewr
SMITE
snapcount
SNPhood
sojourner
SomaticSignatures
Spaniel
sparrow
SparseSignatures
SpatialCPie
SpatialDecon
spatialHeatmap
spatzie
SpectralTAD
spicyR
SpidermiR
SPLINTER
SPONGE
SPsimSeq
SRAdb
srnadiff
STAN
StarBioTrek
SubCellBarCode
subSeq
supersigs
survcomp
survtype
SWATH2stats
synergyfinder
systemPipeShiny
systemPipeTools
TADCompare
TarSeqQC
TBSignatureProfiler
TCGAbiolinks
TCGAbiolinksGUI
tidySingleCellExperiment
tidySummarizedExperiment
TimeSeriesExperiment
TimiRGeN
TIN
TitanCNA
tLOH
TnT
ToxicoGx
TPP
trackViewer
transcriptogramer
transcriptR
treekoR
trena
tripr
ttgsea
TVTB
Ularcirc
uncoverappLib
VAExprs
VanillaICE
VariantExperiment
VariantFiltering
viper
ViSEAGO
vissE
vulcan
wateRmelon
wavClusteR
Xeva
XNAString
yamss
YAPSA
yarn
ENCODExplorerData
GenomicState
gwascatData
IlluminaHumanMethylation27kanno.ilmn12.hg19
IlluminaHumanMethylation27kmanifest
IlluminaHumanMethylation450kanno.ilmn12.hg19
IlluminaHumanMethylation450kmanifest
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
IlluminaHumanMethylationEPICanno.ilm10b3.hg19
IlluminaHumanMethylationEPICanno.ilm10b4.hg19
IlluminaHumanMethylationEPICmanifest
lumiHumanIDMapping
lumiMouseIDMapping
lumiRatIDMapping
aracne.networks
BeadArrayUseCases
BeadSorted.Saliva.EPIC
bsseqData
ChIC.data
cnvGSAdata
diggitdata
DMRcatedata
dorothea
dyebiasexamples
ffpeExampleData
Fletcher2013b
FlowSorted.Blood.450k
FlowSorted.Blood.EPIC
FlowSorted.CordBlood.450k
FlowSorted.CordBloodCombined.450k
FlowSorted.CordBloodNorway.450k
FlowSorted.DLPFC.450k
GenomicDistributionsData
GSE103322
GSE13015
GSE62944
GWASdata
HMP2Data
lumiBarnes
MAQCsubset
MAQCsubsetILM
MethylAidData
minfiData
minfiDataEPIC
mvoutData
PCHiCdata
PtH2O2lipids
RcisTarget.hg19.motifDBs.cisbpOnly.500bp
ReactomeGSA.data
RegParallel
RTCGA.clinical
RTCGA.CNV
RTCGA.methylation
RTCGA.miRNASeq
RTCGA.mRNA
RTCGA.mutations
RTCGA.PANCAN12
RTCGA.rnaseq
RTCGA.RPPA
scanMiRData
scATAC.Explorer
scpdata
spatialLIBD
tcgaWGBSData.hg19
CAGEWorkflow
cytofWorkflow
EGSEA123
ExpHunterSuite
generegulation
GeoMxWorkflows
highthroughputassays
maEndToEnd
methylationArrayAnalysis
proteomics
recountWorkflow
rnaseqGene
SingscoreAMLMutations
TCGAWorkflow
csawBook
OSCA.advanced
OSCA.basic
OSCA.multisample
OSCA.workflows
APL
ASICS
ATACCoGAPS
bandle
BG2
BiocPkgTools
BioNAR
biosigner
BOBaFIT
borealis
cbaf
CBEA
CBNplot
CDI
CHETAH
cliqueMS
CoGAPS
comapr
compEpiTools
compSPOT
CoSIA
cosmiq
COTAN
crisprVerse
crisprViz
CuratedAtlasQueryR
cytofQC
CytoPipeline
CytoPipelineGUI
decontX
DeMixT
DESpace
DifferentialRegulation
dreamlet
EasyCellType
enrichViewNet
EpiCompare
EpiMix
epimutacions
epistasisGA
escape
EWCE
extraChIPs
factR
fastreeR
FLAMES
flowGate
gatom
gDR
gDRcore
gDRimport
gDRutils
gemma.R
GenomAutomorphism
GenomicPlot
GenProSeq
GeoTcgaData
ggkegg
ggsc
GNOSIS
goSorensen
gpuMagic
GRaNIE
HERON
HiCBricks
HiCDOC
HiCool
IFAA
ILoReg
iNETgrate
infercnv
InPAS
IntOMICS
IsoBayes
katdetectr
LACE
lineagespot
LinTInd
Macarron
mariner
MBECS
MetaboAnnotation
MetaPhOR
metapone
methylPipe
MICSQTL
MobilityTransformR
MoleculeExperiment
Moonlight2R
Motif2Site
MsBackendSql
MsExperiment
mslp
MsQuality
MSstatsBig
MSstatsShiny
MultiBaC
MultiRNAflow
multiWGCNA
ncGTW
netZooR
nipalsMCIA
octad
OGRE
omicsViewer
pairedGSEA
PanomiR
PanViz
pareg
partCNV
phantasusLite
phenomis
protGear
PSMatch
qmtools
raer
RAIDS
RegionalST
RESOLVE
restfulSE
ReUseData
rhdf5client
Risa
RMassBank
RnaSeqSampleSize
ropls
rqt
SARC
SCArray.sat
scBubbletree
scFeatures
scider
scifer
scMET
SCOPE
scPipe
scRNAseqApp
seqArchRplus
SGCP
signeR
signifinder
SimBu
SOMNiBUS
SpatialOmicsOverlay
speckle
SpliceWiz
SpotClean
Statial
stJoincount
SVMDO
synlet
tadar
TDbasedUFEadv
tenXplore
TFHAZ
tidybulk
tomoseqr
TOP
TSAR
UCell
Uniquorn
xcms
geneplast.data
faahKO
healthyControlsPresenceChecker
HiBED
ListerEtAlBSseq
MetaScope
seqpac
dichromat
BoolNet
HDO.db
GWASExactHW
GGally
ggpubr
bootstrap
Linnorm
sSeq
logistf
survivalROC
MetBrewer
ggplot.multistats
affyPLM
origami
ncdfFlow
text2vec
bench
restfulr
ncdf4
fftwtools
scatterpie
IRkernel
ontologyPlot
SeqSQC
naturalsort
quantsmooth
setRNG
textstem
relations
wesanderson
beadarray
nc