From aa20c517708371fceff017be687d812fca6786fc Mon Sep 17 00:00:00 2001
From: Haibao Tang <tanghaibao@gmail.com>
Date: Thu, 23 Nov 2023 20:33:12 -0800
Subject: [PATCH] Set logging level from INFO to DEBUG to match old behavior

---
 jcvi/apps/base.py        | 2 +-
 jcvi/graphics/base.py    | 6 ++----
 jcvi/graphics/synteny.py | 2 +-
 3 files changed, 4 insertions(+), 6 deletions(-)

diff --git a/jcvi/apps/base.py b/jcvi/apps/base.py
index 100642c3..32ff24e3 100644
--- a/jcvi/apps/base.py
+++ b/jcvi/apps/base.py
@@ -61,7 +61,7 @@ def get_logger(name: str):
         logger.handlers.clear()
     logger.addHandler(RichHandler())
     logger.propagate = False
-    logger.setLevel(logging.INFO)
+    logger.setLevel(logging.DEBUG)
     return logger
 
 
diff --git a/jcvi/graphics/base.py b/jcvi/graphics/base.py
index 5569a70a..7e9d0ef2 100644
--- a/jcvi/graphics/base.py
+++ b/jcvi/graphics/base.py
@@ -34,7 +34,6 @@
     FancyArrowPatch,
     FancyBboxPatch,
 )
-from matplotlib.path import Path
 from typing import Optional
 
 from ..apps.base import datadir, glob, listify, logger, sample_N, which
@@ -313,7 +312,6 @@ def savefig(figname, dpi=150, iopts=None, cleanup=True):
         format = "pdf"
     try:
         logger.debug("Matplotlib backend is: %s", mpl.get_backend())
-        logger.debug("Attempting save as: %s", figname)
         plt.savefig(figname, dpi=dpi, format=format)
     except Exception as e:
         logger.error("savefig failed with message:\n%s", e)
@@ -324,9 +322,9 @@ def savefig(figname, dpi=150, iopts=None, cleanup=True):
                 remove(figname)
         sys.exit(1)
 
-    msg = "Figure saved to `{0}`".format(figname)
+    msg = f"Figure saved to `{figname}`"
     if iopts:
-        msg += " {0}".format(iopts)
+        msg += f" {iopts}"
     logger.debug(msg)
 
     if cleanup:
diff --git a/jcvi/graphics/synteny.py b/jcvi/graphics/synteny.py
index a344b039..671c757a 100644
--- a/jcvi/graphics/synteny.py
+++ b/jcvi/graphics/synteny.py
@@ -22,6 +22,7 @@
 
 import numpy as np
 import matplotlib.transforms as transforms
+from matplotlib.path import Path
 
 from ..apps.base import OptionParser, logger
 from ..compara.synteny import BlockFile
@@ -31,7 +32,6 @@
     markup,
     plt,
     savefig,
-    Path,
     PathPatch,
     AbstractLayout,
 )