Error

[gradsmjin814]

Dear developers,

I appreciate the development of the program
I was running a test run to understand what the flip dosage option does (which I believe it flips the A0 and A1 A0 is minor allele in the bfile?) and faced the error.
The issue maybe seems to be deriving from the package configuration?
Below are my code and error output

plinkCoxSurv(
bed.file=bed.YAOSP.OE,
covariate.file=phenoCovar.YAOSP.OE,
id.column='MMSID',
time.to.event='YAOSP',
event='Status',
covariates=c('YOB', 'AAO', 'PC1', 'PC2','PC3', 'PC4'),
inter.term=NULL,
print.covs='only',
out.file = '/castor/project/proj/soujin/TimeP/YAOSP_OE_240604',
chunk.size=10000,
maf.filter=NULL,
clusterObj=c1,
flip.dosage=F,
verbose=T
)

---

Analyzing part 2080/2081...
Analyzing part 2081/2081...
Error in rowVars(x, rows = rows, cols = cols, na.rm = na.rm, refine = refine, :
Argument 'dim.' must be an integer vector of length two.
Calls: plinkCoxSurv ... loadProcessWrite.PlinkGdsImpute2CoxSurv -> runOnChunks -> rowSds -> rowVars

---

Thanks for your help in advance

[lict99]

The same error to me.
When I just run one SNP, this error occured. But when I run all SNPs (~7 million), this error disappeared. I don't know why.