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Thank you to the developer for creating this software.
When the MAF is set, it can accurately delete SNPs. While this does not affect the outcomes in the main file, the snps_removed file that is generated is incorrect.
Using plinkCoxSurv, Figure 1 shows 3 SNPs as an example, and Figures 2 and 3 are for MAF 0.4. It is evident that the snps_removed file is incorrect.
The same happens when I analyze using my own files.
The text was updated successfully, but these errors were encountered:
Thank you to the developer for creating this software.
When the MAF is set, it can accurately delete SNPs. While this does not affect the outcomes in the main file, the snps_removed file that is generated is incorrect.
Using plinkCoxSurv, Figure 1 shows 3 SNPs as an example, and Figures 2 and 3 are for MAF 0.4. It is evident that the snps_removed file is incorrect.
The same happens when I analyze using my own files.
The text was updated successfully, but these errors were encountered: