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"We recently conducted a GWAS using your gwasurvivr package (thank you!) and were wondering if it is possible to run the analysis without covariate adjustment (the function insists on receiving an nonempty character vector of covariates). If so, can you please advise us on how to do so?"
"On a related note, can you please clarify which allele is being modeled as the effect allele in the output file and which column contains the frequency of the effect allele in the sample? We can’t seem to find this in the documentation or supplementary documentation.
For example, AF is generally equal to MAF, and SAMP_FREQ_ALT is generally equal to SAMP_MAF. But MAF and SAMP_MAF are not equal to each other."
The text was updated successfully, but these errors were encountered:
"We recently conducted a GWAS using your gwasurvivr package (thank you!) and were wondering if it is possible to run the analysis without covariate adjustment (the function insists on receiving an nonempty character vector of covariates). If so, can you please advise us on how to do so?"
"On a related note, can you please clarify which allele is being modeled as the effect allele in the output file and which column contains the frequency of the effect allele in the sample? We can’t seem to find this in the documentation or supplementary documentation.
For example, AF is generally equal to MAF, and SAMP_FREQ_ALT is generally equal to SAMP_MAF. But MAF and SAMP_MAF are not equal to each other."
The text was updated successfully, but these errors were encountered: