diff --git a/src/main/java/genepi/imputationserver/steps/InputValidation.java b/src/main/java/genepi/imputationserver/steps/InputValidation.java index 11958a3..e9da5e0 100644 --- a/src/main/java/genepi/imputationserver/steps/InputValidation.java +++ b/src/main/java/genepi/imputationserver/steps/InputValidation.java @@ -289,6 +289,8 @@ private boolean checkVcfFiles(WorkflowContext context) { context.incCounter("samples", noSamples); context.incCounter("genotypes", noSamples * noSnps); context.incCounter("chromosomes", noSamples * chromosomes.size()); + context.incCounter("chunks", chunks); + context.incCounter("chunk_samples", chunks * noSamples); context.incCounter("runs", 1); context.incCounter("refpanel_" + reference, 1); context.incCounter("phasing_" + "eagle", 1);