From 4bd58806c206076e8b5f182f3f967c21bfcaa9be Mon Sep 17 00:00:00 2001 From: Stan Jenkins Date: Mon, 25 Nov 2024 16:02:42 -0500 Subject: [PATCH 1/5] Updates the Stan submodule to 595ae4169. --- stan | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/stan b/stan index e92ace6cb7..595ae41690 160000 --- a/stan +++ b/stan @@ -1 +1 @@ -Subproject commit e92ace6cb7826ef1f1b88d6e228f9cdac96ee00b +Subproject commit 595ae416900093bdaa1309634c927a4814038b49 From 8516dcb7a76388839959577ac6d66172497a1650 Mon Sep 17 00:00:00 2001 From: Mitzi Morris Date: Thu, 28 Nov 2024 14:28:22 -0500 Subject: [PATCH 2/5] update function call for MAD --- src/cmdstan/stansummary_helper.hpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/cmdstan/stansummary_helper.hpp b/src/cmdstan/stansummary_helper.hpp index 2b21f9abcd..e9bb0d4e87 100644 --- a/src/cmdstan/stansummary_helper.hpp +++ b/src/cmdstan/stansummary_helper.hpp @@ -410,7 +410,7 @@ void get_stats(const stan::mcmc::chainset &chains, params(i, 0) = chains.mean(i_chains); params(i, 1) = chains.mcse_mean(i_chains); params(i, 2) = chains.sd(i_chains); - params(i, 3) = chains.max_abs_deviation(i_chains); + params(i, 3) = chains.med_abs_deviation(i_chains); Eigen::VectorXd quantiles = chains.quantiles(i_chains, probs); for (int j = 0; j < quantiles.size(); j++) params(i, 4 + j) = quantiles(j); From f011c41feb7ed3ab1e66e9553cf8b6f959b3ea83 Mon Sep 17 00:00:00 2001 From: Stan Jenkins Date: Thu, 28 Nov 2024 22:22:27 -0500 Subject: [PATCH 3/5] Updates the Stan submodule to 185f36832. --- stan | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/stan b/stan index 595ae41690..185f36832f 160000 --- a/stan +++ b/stan @@ -1 +1 @@ -Subproject commit 595ae416900093bdaa1309634c927a4814038b49 +Subproject commit 185f36832fa3fa8a04ba8c23640aa54d2691b13b From 564cf3b1b174d547ca580260bd285dc04dbb7101 Mon Sep 17 00:00:00 2001 From: Stan Jenkins Date: Fri, 29 Nov 2024 14:15:27 -0500 Subject: [PATCH 4/5] Updates the Stan submodule to 42731ba4f. --- stan | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/stan b/stan index 185f36832f..42731ba4f2 160000 --- a/stan +++ b/stan @@ -1 +1 @@ -Subproject commit 185f36832fa3fa8a04ba8c23640aa54d2691b13b +Subproject commit 42731ba4f29b0db0daf884df24e935b1fe877eff From 41e77f0737dc2e11d7f873a80ee34d8fe6a8d6f3 Mon Sep 17 00:00:00 2001 From: Stan Jenkins Date: Fri, 29 Nov 2024 16:58:44 -0500 Subject: [PATCH 5/5] Updates the Stan submodule to f4fb7cb3b. --- stan | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/stan b/stan index 42731ba4f2..f4fb7cb3b4 160000 --- a/stan +++ b/stan @@ -1 +1 @@ -Subproject commit 42731ba4f29b0db0daf884df24e935b1fe877eff +Subproject commit f4fb7cb3b4ec0b1026c505dcacf6cc4deea3ebd4