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genten.c
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genten.c
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#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <math.h>
#include <unistd.h>
#include <omp.h>
#define ULLI unsigned long long int
#define USHI unsigned short int
#define INTSIZE 268435456
#define APPLY_IMBALANCE 1
#define RATIO_MIN 0.95
#define RATIO_MAX 1.05
/*
Methods to generate normally distributed random variables are adapted from gennorm.c in
https://cse.usf.edu/~kchriste/tools/gennorm.c
*/
// int rand_log_norm(double mean, double stdev, int seed_bm);
// int rand_normal(double mean, double stdev, int seed_bm);
double norm_box_muller(double mean, double stdev, int seed_bm);
double calculate_std(int *arr, int arr_size, double mean);
void print_vec ( ULLI *array, int array_size);
void print_vec_double ( double *array, int array_size);
void *safe_malloc(size_t size);
void *safe_calloc(size_t count, size_t size);
void printusage();
int main(int argc, char *argv[])
{
double time_start = omp_get_wtime();
int input;
double density, density_slice, density_fiber, cv_fib_per_slc, cv_nz_per_fib;
double density_requested, density_slice_requested, density_fiber_requested, cv_fib_per_slc_requested, cv_nz_per_fib_requested;
double avg_fib_per_slc, std_fib_per_slc, avg_nz_per_fib, std_nz_per_fib;
double avg_log_norm, std_log_norm, avg_square, std_square;
double avg_fib_per_slc_requested, std_fib_per_slc_requested, avg_nz_per_fib_requested, std_nz_per_fib_requested;
double imbal_fib_per_slc, imbal_nz_per_fib, imbal_fib_per_slc_requested, imbal_nz_per_fib_requested;
int max_fib_per_slc, max_nz_per_fib, max_fib_per_slc_requested, max_nz_per_fib_requested;
ULLI slc_cnt_total;
ULLI nnz, nz_fib_cnt, nz_slc_cnt;
ULLI nnz_requested, nz_fib_cnt_requested, nz_slc_cnt_requested;
density = 0.001;
density_fiber = 0.01;
density_slice = 1.0;
imbal_fib_per_slc = -1;
imbal_nz_per_fib = -1;
cv_fib_per_slc = cv_nz_per_fib = 0.5;
int random_seed = 1;
int outfile_entered=0;
int print_header = 0;
int print_debug = 0;
int write_tensor = 1;
int distribution_type = 0;
char outfile[200];
if (argc <= optind)
printusage();
int order = atoi(argv[1]);
int *dim = (int *) safe_malloc(order * sizeof(int));
for (int i = 0; i<order; i++){
dim[i]= atoi(argv[i+2]);
}
int id_first = dim[order-2];
int id_second = dim[order-1];
while ((input = getopt(argc, argv, "d:s:f:c:v:i:b:r:o:h:p:w:")) != -1)
{
switch (input)
{
case 'd': density = atof(optarg);
break;
case 's': density_slice = atof(optarg);
break;
case 'f': density_fiber = atof(optarg);
break;
case 'c': cv_fib_per_slc = atof(optarg);
break;
case 'v': cv_nz_per_fib = atof(optarg);
break;
case 'i': imbal_fib_per_slc = atof(optarg);
break;
case 'b': imbal_nz_per_fib = atof(optarg);
break;
case 'r': random_seed = atoi(optarg);
break;
case 'o': sprintf(outfile, "%s", optarg);
outfile_entered = 1;
break;
case 'h': print_header = atoi(optarg);
break;
case 'p': print_debug = atoi(optarg);
break;
case 'w': write_tensor = atoi(optarg);
break;
}
}
if (outfile_entered==0)
{
sprintf(outfile, "%s", "generated_tensor_");
pid_t pid = getpid();
char pid_str[16];
snprintf(pid_str, sizeof(pid_str), "%d", pid);
strcat(strcat(outfile, pid_str), ".tns");
}
srand(random_seed);
if (print_header){
printf("name \t seed \t order \t ");
for (int i = 0; i< order; i++){
printf("dim_%d \t ", i);
}
printf("slc_type \t ");
printf("nz_slc_cnt \t requested \t result \t");
printf("density_slc \t requested \t result \t ratio \t ");
printf("distr_type \t no \t ");
if (APPLY_IMBALANCE){
printf("max_fib_per_slc \t requested \t result \t ratio \t " );
printf("imbal_fib_per_slc \t requested \t result \t ratio \t " );
}
printf("std_fib_per_slc \t requested \t result \t ratio \t " );
printf("cv_fib_per_slc \t requested \t result \t ratio \t " );
printf("avg_fib_per_slc \t requested \t result \t ratio \t " );
printf("nz_fib_cnt \t requested \t result \t " );
printf("density_fib \t requested \t result \t ratio_prev \t ratio_last \t ");
printf("distr_type \t no \t ");
if (APPLY_IMBALANCE){
printf("max_nz_per_fib \t requested \t result \t ratio \t " );
printf("imbal_nz_per_fib \t requested \t result \t ratio \t " );
}
printf("std_nz_per_fib \t requested \t result \t ratio \t " );
printf("cv_nz_per_fib \t requested \t result \t ratio \t " );
printf("avg_nz_per_fib \t requested \t result \t ratio \t " );
printf("nnz \t requested \t result \t " );
printf("density \t requested \t result \t ratio_prev \t ratio_last \t ");
printf("threads \t TIME \t time_slc \t time_fib \t time_nz \t time_nz_ind \t time_write \t time_total \n");
}
printf("%s \t %d \t %d \t ", outfile, random_seed, order);
for (int i = 0; i< order; i++){
printf("%d \t ", dim[i]);
}
slc_cnt_total = 1;
for (int i = 0; i< order-2; i++){
slc_cnt_total *= dim[i];
}
nnz = (ULLI) (density * slc_cnt_total * id_first * id_second );
nz_slc_cnt = (ULLI) ( density_slice * slc_cnt_total );
nz_fib_cnt = (ULLI) ( density_fiber * slc_cnt_total * id_first );
if (print_debug){
printf("\nslc_cnt_total : %lld \n", slc_cnt_total);
printf("nnz : %lld \n", nnz);
printf("nz_slc_cnt : %lld \n", nz_slc_cnt);
printf("nz_fib_cnt : %lld \n", nz_fib_cnt);
}
avg_fib_per_slc = (nz_fib_cnt+0.0) / nz_slc_cnt ;
std_fib_per_slc = cv_fib_per_slc * avg_fib_per_slc;
avg_nz_per_fib = (nnz + 0.0) / nz_fib_cnt;
std_nz_per_fib = cv_nz_per_fib * avg_nz_per_fib;
max_fib_per_slc = id_first;
max_nz_per_fib = id_second;
if (imbal_fib_per_slc != -1.0){
max_fib_per_slc = (int) round (imbal_fib_per_slc * avg_fib_per_slc + avg_fib_per_slc);
}
if (imbal_nz_per_fib != -1.0){
max_nz_per_fib = (int) round (imbal_nz_per_fib * avg_nz_per_fib + avg_nz_per_fib);
}
if (max_fib_per_slc > id_first){
max_fib_per_slc = id_first;
}
if (max_nz_per_fib > id_second){
max_nz_per_fib = id_second;
}
if (!APPLY_IMBALANCE){
max_fib_per_slc = id_first;
max_nz_per_fib = id_second;
}
nnz_requested = nnz;
nz_fib_cnt_requested = nz_fib_cnt;
nz_slc_cnt_requested = nz_slc_cnt;
density_slice_requested = density_slice;
density_fiber_requested = density_fiber;
density_requested = density;
cv_fib_per_slc_requested = cv_fib_per_slc;
cv_nz_per_fib_requested = cv_nz_per_fib;
avg_fib_per_slc_requested = avg_fib_per_slc;
std_fib_per_slc_requested = std_fib_per_slc;
avg_nz_per_fib_requested = avg_nz_per_fib;
std_nz_per_fib_requested = std_nz_per_fib;
imbal_fib_per_slc_requested = imbal_fib_per_slc;
imbal_nz_per_fib_requested = imbal_nz_per_fib;
max_fib_per_slc_requested = max_fib_per_slc;
max_nz_per_fib_requested = max_nz_per_fib;
if (density_slice > 0.97) {
density_slice = 1.0;
nz_slc_cnt = slc_cnt_total;
}
ULLI nz_slc_cnt_max = nz_slc_cnt;
//for memory and number accuracy
if (density_slice < 1.0 && density_slice > 0.1) {
nz_slc_cnt_max *= 1.1;
}
int **nz_slc_inds = (int **) safe_malloc((order-2) * sizeof(int*));
for (int i = 0; i < order-2; i++){
nz_slc_inds[i] = (int *) safe_malloc(nz_slc_cnt_max * sizeof(int));
}
if (print_debug) printf(" \n ***SLICE_START \n ");
//time for slice count
double time_start1 = omp_get_wtime();
USHI slc_category = 0;
if (density_slice == 1.0) { // meaning nz_slc_cnt = slc_cnt_total . assign slice indices in sorted order
slc_category = 1;
if (order == 3){
#pragma omp parallel for
for (ULLI j = 0; j < nz_slc_cnt; j++) {
nz_slc_inds[0][j] = j;
}
}
else if (order == 4){
int divider = dim [1];
#pragma omp parallel for
for (ULLI j = 0; j < nz_slc_cnt; j++) {
nz_slc_inds[1][j] = j % divider;
nz_slc_inds[0][j] = j / divider;
}
}
else if (order == 5){
int divider = dim[2];
ULLI divider_big = (ULLI) dim[2] * dim[1];
#pragma omp parallel for
for (ULLI j = 0; j < nz_slc_cnt; j++) {
nz_slc_inds[2][j] = j % divider;
nz_slc_inds[1][j] = j / divider;
nz_slc_inds[0][j] = j / divider_big;
}
}
else{ // valid for n-dim
int divider = dim [order-3];
#pragma omp parallel for
for (ULLI j = 0; j < nz_slc_cnt; j++) {
nz_slc_inds[order-3][j] = j % divider;
nz_slc_inds[order-4][j] = j / divider;
}
ULLI divider_big = (ULLI) divider;
for (int i = order-5; i >= 0; i--) {
divider_big *= dim [i+1];
#pragma omp parallel for
for (ULLI j = 0; j < nz_slc_cnt; j++) {
nz_slc_inds[i][j] = j / divider_big;
}
}
}
}
else if (density_slice > 0.5) { // assumes is_slc_empty of size slc_cnt_total can fit into memory
slc_category = 2;
// determine the slice indices that are empty
USHI *is_slc_empty = (USHI *) safe_calloc(slc_cnt_total, sizeof(USHI));
// select the empty slices instead of nonzeros because they are less
ULLI empty_slc_cnt = (slc_cnt_total - nz_slc_cnt) * 1.03;
for (ULLI j = 0; j < empty_slc_cnt; j++) {
is_slc_empty [rand() % slc_cnt_total] = 1;
}
nz_slc_cnt = 0;
if (order == 3){
for (ULLI j = 0; j < slc_cnt_total; j++) {
if (is_slc_empty [j] == 0){
nz_slc_inds[0][nz_slc_cnt] = j;
nz_slc_cnt++;
}
}
}
else if (order == 4){
int divider = dim [1];
for (ULLI j = 0; j < slc_cnt_total; j++) {
if (is_slc_empty [j] == 0){
nz_slc_inds[1][nz_slc_cnt] = j % divider;
nz_slc_inds[0][nz_slc_cnt] = j / divider;
nz_slc_cnt++;
}
}
}
else if (order == 5){
int divider = dim [2];
ULLI divider_big = (ULLI) dim [2] * dim [1];
for (ULLI j = 0; j < slc_cnt_total; j++) {
if (is_slc_empty [j] == 0 ){
nz_slc_inds[2][nz_slc_cnt] = j % divider;
nz_slc_inds[1][nz_slc_cnt] = j / divider;
nz_slc_inds[0][nz_slc_cnt] = j / divider_big;
nz_slc_cnt++;
}
}
}
else{ // valid for n-dim
int divider = dim [order-3];
for (ULLI j = 0; j < slc_cnt_total; j++) {
if (is_slc_empty [j] == 0 ){
nz_slc_inds[order-3][nz_slc_cnt] = j % divider;
nz_slc_inds[order-4][nz_slc_cnt] = j / divider;
nz_slc_cnt++;
}
}
ULLI divider_big = (ULLI) divider;
for (int i = order-5; i >= 0; i--) {
divider_big *= dim [i+1];
for (ULLI j = 0; j < slc_cnt_total; j++) {
if (is_slc_empty [j] == 0 ){
nz_slc_inds [i][nz_slc_cnt] = j / divider_big;
nz_slc_cnt++;
}
}
}
}
free (is_slc_empty);
}
else if (density_slice > 0.1) {
slc_category = 3;
nz_slc_cnt = 0;
if (order == 3){
for (ULLI j = 0; j < slc_cnt_total; j++) {
double random_number = (double)rand() / RAND_MAX;
if (density_slice >= random_number) {
nz_slc_inds[0][nz_slc_cnt] = j;
nz_slc_cnt++;
}
}
}
else if (order == 4){
int divider = dim [1];
for (ULLI j = 0; j < slc_cnt_total; j++) {
double random_number = (double)rand() / RAND_MAX;
if (density_slice >= random_number) {
nz_slc_inds[1][nz_slc_cnt] = j % divider;
nz_slc_inds[0][nz_slc_cnt] = j / divider;
nz_slc_cnt++;
}
}
}
else if (order == 5){
int divider = dim [2];
ULLI divider_big = (ULLI) dim [2] * dim [1];
for (ULLI j = 0; j < slc_cnt_total; j++) {
double random_number = (double)rand() / RAND_MAX;
if (density_slice >= random_number) {
nz_slc_inds[2][nz_slc_cnt] = j % divider;
nz_slc_inds[1][nz_slc_cnt] = j / divider;
nz_slc_inds[0][nz_slc_cnt] = j / divider_big;
nz_slc_cnt++;
}
}
}
else{ // valid for n-dim
int divider = dim [order-3];
for (ULLI j = 0; j < slc_cnt_total; j++) {
double random_number = (double)rand() / RAND_MAX;
if (density_slice >= random_number) {
nz_slc_inds[order-3][nz_slc_cnt] = j % divider;
nz_slc_inds[order-4][nz_slc_cnt] = j / divider;
ULLI divider_big = (ULLI) divider;
for (int i = order-5; i >= 0; i--) {
divider_big *= dim [i+1];
nz_slc_inds[i][nz_slc_cnt] = j / divider_big;
}
nz_slc_cnt++;
}
}
}
}
else{ // means density_slice < 0.1
slc_category = 4;
int curr_dim;
//#pragma omp parallel for
for (int i = 0; i < order-2; i++) {
curr_dim = dim[i];
for (ULLI j = 0; j < nz_slc_cnt; j++) {
nz_slc_inds[i][j] = rand() % curr_dim;
}
}
}
double time_nz_slc = omp_get_wtime() - time_start1;
density_slice = (double) nz_slc_cnt / slc_cnt_total;
printf("%d \t ", slc_category);
printf("nz_slc_cnt \t %llu \t %llu \t ", nz_slc_cnt_requested, nz_slc_cnt );
printf("density_slc \t %g \t %g \t %g \t ", density_slice_requested, density_slice, density_slice/density_slice_requested);
if (print_debug) printf(" \n ***SLICE_DONE \n ");
//update with changed nz_slc_cnt
avg_fib_per_slc = (nz_fib_cnt_requested + 0.0 ) / nz_slc_cnt ;
std_fib_per_slc = cv_fib_per_slc * avg_fib_per_slc;
int *fib_per_slice = (int*) safe_malloc(nz_slc_cnt * sizeof(int));
double *fib_per_slice_double = (double*) safe_malloc(nz_slc_cnt * sizeof(double));
time_start1 = omp_get_wtime();
nz_fib_cnt = 0;
random_seed = random_seed * order + id_second % 10;
// construct fib_per_slice and calculate nz_fib_cnt
if(std_fib_per_slc == 0.0){
#pragma omp parallel for
for (ULLI i = 0; i < nz_slc_cnt; i++) {
fib_per_slice_double[i] = avg_fib_per_slc;
fib_per_slice[i] = (int) round ( avg_fib_per_slc );
}
nz_fib_cnt = nz_slc_cnt * fib_per_slice[0];
}
else{
if( avg_fib_per_slc - 3 * std_fib_per_slc > 0 ){ // apply normal distribution if most values are expected to be positive
#pragma omp parallel for
for (ULLI i = 0; i < nz_slc_cnt; i++) {
double fib_curr_slice_double = norm_box_muller ( avg_fib_per_slc, std_fib_per_slc, random_seed*(i+1) );
// int fib_curr_slice = rand_normal( avg_fib_per_slc, std_fib_per_slc, random_seed*(i+1) );
int fib_curr_slice = (int) round ( fib_curr_slice_double);
if ( fib_curr_slice < 1){
fib_curr_slice = 1;
}
if ( fib_curr_slice > max_fib_per_slc){
fib_curr_slice = max_fib_per_slc;
}
fib_per_slice_double[i] = fib_curr_slice_double;
fib_per_slice[i] = fib_curr_slice;
}
distribution_type = 1;
}
else{ // apply log-normal distribution
// convertion for log-normal distribution
avg_square = avg_fib_per_slc*avg_fib_per_slc;
std_square = std_fib_per_slc*std_fib_per_slc;
avg_log_norm = log(avg_square / sqrt(avg_square + std_square));
std_log_norm = sqrt(log(1 + std_square / avg_square));
#pragma omp parallel for
for (ULLI i = 0; i < nz_slc_cnt; i++) {
double fib_curr_slice_double = exp ( norm_box_muller (avg_log_norm, std_log_norm, random_seed*(i+1) ) );
// int fib_curr_slice = rand_log_norm( avg_log_norm, std_log_norm, random_seed*(i+1) );
int fib_curr_slice = (int) round ( fib_curr_slice_double);
if ( fib_curr_slice < 1){
fib_curr_slice = 1;
}
if ( fib_curr_slice > max_fib_per_slc){
fib_curr_slice = max_fib_per_slc;
}
fib_per_slice_double[i] = fib_curr_slice_double;
fib_per_slice[i] = fib_curr_slice;
}
distribution_type = 2;
}
#pragma omp parallel for reduction(+ : nz_fib_cnt)
for (ULLI i = 0; i < nz_slc_cnt; i++) {
nz_fib_cnt += fib_per_slice[i];
}
}
double fib_ratio = (nz_fib_cnt_requested + 0.0) / nz_fib_cnt ;
//scale fib_per_slice for true average if needed
if (fib_ratio <RATIO_MIN || fib_ratio > RATIO_MAX){
#pragma omp parallel for
for (ULLI i = 0; i < nz_slc_cnt; i++) {
int fib_curr_slice = (int) round (fib_per_slice_double[i] * fib_ratio);
if ( fib_curr_slice > max_fib_per_slc){
fib_curr_slice = max_fib_per_slc;
}
if ( fib_curr_slice < 1){
fib_curr_slice = 1;
}
fib_per_slice[i] = fib_curr_slice;
}
}
free (fib_per_slice_double);
int **nz_fib_inds = (int **)safe_malloc(nz_slc_cnt * sizeof(int *));
random_seed += fib_per_slice[0]%10;
//determine indices
#pragma omp parallel
{
USHI *is_fib_nz = (USHI *) safe_malloc(id_first * sizeof(USHI));
#pragma omp for
for (ULLI i = 0; i < nz_slc_cnt; i++) {
int fib_curr_slice = fib_per_slice[i];
unsigned int mystate = random_seed * (i+2) + fib_curr_slice;
if(fib_curr_slice==1){
nz_fib_inds[i] = (int *)safe_malloc( 1 * sizeof(int));
nz_fib_inds[i][0] = rand_r(&mystate) % id_first ;
}
else{
for (int j = 0; j < id_first; j++){
is_fib_nz [j] = 0;
}
for (int j = 0; j < fib_curr_slice; j++) {
is_fib_nz [rand_r(&mystate) % id_first] = 1;
// is_fib_nz [rand() % dim_1] = 1;
// is_fib_nz [ (int) floor (rand_val(0) * dim_1) ] = 1;
// is_fib_nz [ rand_val_int(0, dim_1) ] = 1;
}
nz_fib_inds[i] = (int *)safe_malloc(fib_curr_slice * sizeof(int)); //which fibs are nz
fib_curr_slice = 0;
for (int j = 0; j < id_first; j++) {
if (is_fib_nz [j]){
nz_fib_inds[i][fib_curr_slice] = j;
fib_curr_slice++;
}
}
if ( fib_curr_slice > max_fib_per_slc){
fib_curr_slice = max_fib_per_slc;
}
}
fib_per_slice[i] = fib_curr_slice;
}
free ( is_fib_nz );
}
double time_fib_per_slc = omp_get_wtime() - time_start1;
int curr_degree;
max_fib_per_slc = 0;
ULLI *prefix_fib_per_slice = (ULLI *)safe_calloc(nz_slc_cnt+1 , sizeof(ULLI ));
for (ULLI i = 0; i < nz_slc_cnt; i++) {
curr_degree = fib_per_slice[i];
prefix_fib_per_slice[i+1] = prefix_fib_per_slice[i] + curr_degree;
if (curr_degree > max_fib_per_slc)
max_fib_per_slc = curr_degree;
}
nz_fib_cnt = prefix_fib_per_slice[nz_slc_cnt];
density_fiber = (nz_fib_cnt + 0.0) / slc_cnt_total / id_first;
avg_fib_per_slc = (nz_fib_cnt + 0.0) / nz_slc_cnt;
std_fib_per_slc = calculate_std(fib_per_slice, nz_slc_cnt, avg_fib_per_slc);
cv_fib_per_slc = (double) std_fib_per_slc / avg_fib_per_slc;
imbal_fib_per_slc = ( max_fib_per_slc + 0.0 ) / avg_fib_per_slc - 1;
printf("distr_type \t %d \t ", distribution_type);
if (APPLY_IMBALANCE){
printf("max_fib_per_slc \t %d \t %d \t %g \t ", max_fib_per_slc_requested, max_fib_per_slc, (max_fib_per_slc+0.0)/max_fib_per_slc_requested );
printf("imbal_fib_per_slc \t %g \t %g \t %g \t ", imbal_fib_per_slc_requested, imbal_fib_per_slc, (imbal_fib_per_slc+0.0)/imbal_fib_per_slc_requested );
}
printf("std_fib_per_slc \t %g \t %g \t %g \t ", std_fib_per_slc_requested, std_fib_per_slc, (std_fib_per_slc+0.0)/std_fib_per_slc_requested );
printf("cv_fib_per_slc \t %g \t %g \t %g \t ", cv_fib_per_slc_requested, cv_fib_per_slc, (cv_fib_per_slc+0.0)/cv_fib_per_slc_requested );
printf("avg_fib_per_slc \t %g \t %g \t %g \t ", avg_fib_per_slc_requested, avg_fib_per_slc, (avg_fib_per_slc+0.0)/avg_fib_per_slc_requested );
printf("nz_fib_cnt \t %llu \t %llu \t ", nz_fib_cnt_requested, nz_fib_cnt );
printf("density_fib \t %g \t %g \t %g \t %g \t ", density_fiber_requested, density_fiber, 1/fib_ratio, density_fiber/density_fiber_requested);
if (print_debug) printf(" \n ***FIBER_DONE \n ");
//update with changed nz_fib_cnt
avg_nz_per_fib = (nnz + 0.0) / nz_fib_cnt;
std_nz_per_fib = cv_nz_per_fib * avg_nz_per_fib;
int *nz_per_fiber = (int *)safe_malloc(nz_fib_cnt * sizeof(int *));
double *nz_per_fiber_double = (double *)safe_malloc(nz_fib_cnt * sizeof(double *));
distribution_type = 0;
random_seed += max_fib_per_slc % 10;
time_start1 = omp_get_wtime();
// construct nz_per_fiber and calculate nnz
nnz = 0;
if(std_nz_per_fib == 0){
#pragma omp parallel for
for (ULLI i = 0; i < nz_fib_cnt; i++) {
nz_per_fiber_double[i] = avg_nz_per_fib ;
nz_per_fiber[i] = (int) round ( avg_nz_per_fib );
}
nnz = nz_fib_cnt * nz_per_fiber[0];
}
else{
if( avg_nz_per_fib - 3 * std_nz_per_fib > 0 ){ // apply normal distribution if most values are expected to be positive
#pragma omp parallel for
for (ULLI i = 0; i < nz_fib_cnt; i++) {
double nz_curr_fib_double = norm_box_muller( avg_nz_per_fib, std_nz_per_fib, random_seed*(i+3) );
// int nz_curr_fib = rand_normal( avg_nz_per_fib, std_nz_per_fib, random_seed*(i+10) );
int nz_curr_fib = (int) round ( nz_curr_fib_double );
if ( nz_curr_fib < 1){
nz_curr_fib = 1;
}
if ( nz_curr_fib > max_nz_per_fib){
nz_curr_fib = max_nz_per_fib;
}
nz_per_fiber_double[i] = nz_curr_fib_double;
nz_per_fiber[i] = nz_curr_fib;
}
distribution_type = 1;
}
else{ // apply log-normal distribution
// convertion for log-normal distribution
avg_square = avg_nz_per_fib * avg_nz_per_fib;
std_square = std_nz_per_fib * std_nz_per_fib;
avg_log_norm = log(avg_square / sqrt(avg_square + std_square));
std_log_norm = sqrt(log(1 + std_square / avg_square));
#pragma omp parallel for
for (ULLI i = 0; i < nz_fib_cnt; i++) {
double nz_curr_fib_double = exp ( norm_box_muller ( avg_log_norm, std_log_norm, random_seed*(i+3) ));
// int nz_curr_fib = rand_log_norm( avg_log_norm, std_log_norm, random_seed*(i+10) );
int nz_curr_fib = (int) round ( nz_curr_fib_double );
if ( nz_curr_fib < 1){
nz_curr_fib = 1;
}
if ( nz_curr_fib > max_nz_per_fib){
nz_curr_fib = max_nz_per_fib;
}
nz_per_fiber_double[i] = nz_curr_fib_double;
nz_per_fiber[i] = nz_curr_fib;
}
distribution_type = 2;
}
#pragma omp parallel for reduction(+ : nnz)
for (ULLI i = 0; i < nz_fib_cnt; i++) {
nnz += nz_per_fiber[i];
}
}
double nz_ratio = (nnz_requested + 0.0) / nnz ;
//scale nz_per_fiber for true average if needed
if (nz_ratio < RATIO_MIN || nz_ratio > RATIO_MAX){
#pragma omp parallel for
for (ULLI i = 0; i < nz_fib_cnt; i++) {
int nz_curr_fib = (int) round (nz_per_fiber_double[i] * nz_ratio);
if ( nz_curr_fib > max_nz_per_fib){
nz_curr_fib = max_nz_per_fib;
}
if ( nz_curr_fib < 1){
nz_curr_fib = 1;
}
nz_per_fiber[i] = nz_curr_fib;
}
}
free (nz_per_fiber_double);
int **nz_indices_in_fib = (int **)safe_malloc(nz_fib_cnt * sizeof(int *));
random_seed += nz_per_fiber[0] % 10;
//determine indices
#pragma omp parallel
{
USHI *is_nz_ind = (USHI*) safe_malloc(id_second * sizeof(USHI));
#pragma omp for
for (int j = 0; j < nz_fib_cnt; j++){
int nz_curr_fib = nz_per_fiber[j];
unsigned int mystate = random_seed * (j+5) + nz_curr_fib;
if(nz_curr_fib==1){
nz_indices_in_fib[j] = (int *)safe_malloc( 1 * sizeof(int));
nz_indices_in_fib[j][0] = rand_r(&mystate) % id_second ;
}
else{
for (int k = 0; k < id_second; k++){
is_nz_ind [k] = 0;
}
//randomly fill nonzero values
for (int k = 0; k < nz_curr_fib; k++){
is_nz_ind [rand_r(&mystate) % id_second] = 1;
// is_nz_ind [rand() % dim_2] = 1;
// is_nz_ind [ (int) floor (rand_val(0) * dim_2) ] = 1;
// is_nz_ind [ rand_val_int(0, dim_2) ] = 1;
}
nz_indices_in_fib[j] = (int *)safe_calloc( nz_curr_fib , sizeof(int));
nz_curr_fib = 0;
for (int k = 0; k < id_second; k++) {
if (is_nz_ind [k]){
nz_indices_in_fib[j][nz_curr_fib] = k ;
nz_curr_fib++;
}
}
if ( nz_curr_fib > max_nz_per_fib){
nz_curr_fib = max_nz_per_fib;
}
}
nz_per_fiber[j] = nz_curr_fib;
}
free(is_nz_ind);
}
double time_nz_per_fib = omp_get_wtime() - time_start1;
max_nz_per_fib = 0;
ULLI *prefix_nz_per_fiber = (ULLI *)safe_calloc(nz_fib_cnt+1 , sizeof(ULLI ));
for (ULLI i = 0; i < nz_fib_cnt; i++) {
curr_degree = nz_per_fiber[i];
prefix_nz_per_fiber[i+1] = prefix_nz_per_fiber[i] + curr_degree;
if (curr_degree > max_nz_per_fib)
max_nz_per_fib = curr_degree;
}
nnz = prefix_nz_per_fiber [nz_fib_cnt];
density = (nnz + 0.0) / slc_cnt_total / id_first / id_second ;
avg_nz_per_fib = (nnz + 0.0) / nz_fib_cnt;
std_nz_per_fib = calculate_std(nz_per_fiber, nz_fib_cnt, avg_nz_per_fib);
cv_nz_per_fib = (double) std_nz_per_fib / avg_nz_per_fib;
imbal_nz_per_fib = ( max_nz_per_fib + 0.0 ) / avg_nz_per_fib - 1 ;
printf("distr_type \t %d \t ", distribution_type);
if (APPLY_IMBALANCE){
printf("max_nz_per_fib \t %d \t %d \t %g \t ", max_nz_per_fib_requested, max_nz_per_fib, (max_nz_per_fib+0.0)/max_nz_per_fib_requested );
printf("imbal_nz_per_fib \t %g \t %g \t %g \t ", imbal_nz_per_fib_requested, imbal_nz_per_fib, (imbal_nz_per_fib+0.0)/imbal_nz_per_fib_requested );
}
printf("std_nz_per_fib \t %g \t %g \t %g \t ", std_nz_per_fib_requested, std_nz_per_fib, (std_nz_per_fib+0.0)/std_nz_per_fib_requested );
printf("cv_nz_per_fib \t %g \t %g \t %g \t ", cv_nz_per_fib_requested, cv_nz_per_fib, (cv_nz_per_fib+0.0)/cv_nz_per_fib_requested );
printf("avg_nz_per_fib \t %g \t %g \t %g \t ", avg_nz_per_fib_requested, avg_nz_per_fib, (avg_nz_per_fib+0.0)/avg_nz_per_fib_requested );
printf("nnz \t %llu \t %llu \t ", nnz_requested, nnz );
printf("density \t %g \t %g \t %g \t %g \t ", density_requested, density, 1/nz_ratio, density/density_requested);
if (print_debug) printf(" \n ***NONZERO_DONE \n ");
time_start1 = omp_get_wtime();
int **ind = (int **) safe_malloc(order * sizeof(int*));
for (int i = 0; i < order; i++){
ind[i] = (int *) safe_malloc(nnz * sizeof(int));
}
#pragma omp parallel for
for (ULLI i = 0; i < nz_slc_cnt; i++){ //for each nonzero slice
int fib_curr_slice = fib_per_slice[i];
ULLI prefix_fib_start = prefix_fib_per_slice[i];
for (int j = 0; j < fib_curr_slice; j++) { //for each fiber in curr slice
ULLI curr_fib_global = prefix_fib_start + j;
int local_nz_curr_fib = nz_per_fiber[curr_fib_global];
ULLI prefix_nz_start = prefix_nz_per_fiber[curr_fib_global];
for (int k = 0; k < local_nz_curr_fib; k++){ //for each nz in curr fiber
ULLI curr_nz_global = k + prefix_nz_start;
ind[order-2][curr_nz_global] = nz_fib_inds[i][j];
ind[order-1][curr_nz_global] = nz_indices_in_fib[curr_fib_global][k];
for (int m = 0; m <order-2; m++){
ind[m][curr_nz_global] = nz_slc_inds[m][i]; // assign the indices of the current nz slice
}
}
}
}
double time_nz_ind = omp_get_wtime() - time_start1;
if (print_debug) printf(" \n ***IND_DONE \n ");
time_start1 = omp_get_wtime();
if (write_tensor){
FILE *fptr;
fptr = fopen(outfile, "w");
if( fptr == NULL ) {
printf ("\n *** ERROR WHILE OPENING OUT FILE ! *** \n\n");
exit(1);
}
fprintf(fptr, "%d\n", order);
for (int i = 0; i<order; i++){
fprintf(fptr, "%d ", dim[i]);
}
fprintf(fptr, "\n");
for (int n = 0; n < nnz; n++){
// fprintf(fptr, "%d %d %d ", ind_0[n]+1, ind_1[n]+1, ind_2[n]+1);
for (int i = 0; i < order; i++){
fprintf(fptr, "%d ", ind[i][n]+1);
}
fprintf(fptr, "%.1f\n", (rand() % 9 + 1.0) / 10 ); // random numbers between 0.1 and 0.9
// fprintf(fptr, "%.1f\n", (double)rand() / RAND_MAX + 0.1 );
}
fclose(fptr);
}
double time_end = omp_get_wtime();
printf("%d \t TIME \t %.7f \t %.7f \t %.7f \t %.7f \t %.7f \t %.7f \n ", omp_get_max_threads(), time_nz_slc, time_fib_per_slc, time_nz_per_fib, time_nz_ind, time_end - time_start1, time_end - time_start);
return 0;
}
//===========================================================================
//= Function to generate normally distributed random variable using the =
//= Box-Muller method =
//= - Input: mean and standard deviation =
//= - Output: Returns with normally distributed random variable =
//===========================================================================
double norm_box_muller(double mean, double stdev, int seed_bm)
{
double u, r, theta; // Variables for Box-Muller method
double x; // Normal(0, 1) rv
double norm_rv; // The adjusted normal rv
unsigned int mystate = seed_bm * 10;
// Generate u
u = 0.0;
while (u == 0.0){
// u = rand_val(0);
u = (double)rand_r(&mystate) / RAND_MAX;
// u = (double)rand) / RAND_MAX;
}
// Compute r
r = sqrt(-2.0 * log(u));
mystate = floor(mean) * seed_bm;