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removed theory and references
aded alignment statistics plot
Updated Generate Realistic Protein Alignments (markdown)
renamed braw file by adding "constrained"
adapted code for running ccmpredpy with pcd and constraints
added contact map from braw file
Updated Learn Accurate Models with Persistent Contrastive Divergence (markdown)
fixed bug in ccmpred call
Updated Compute and Visualize Contact Maps (markdown)
adapted CCMpredpy output
Updated CCMgen (markdown)
Updated CCMpredPy (markdown)
Updated _Sidebar (markdown)
Updated Getting Started with CCMgen and CCMpredPy (markdown)
updated wiki
corrected links
updated home
setup wiki