From 69e7304363cfbdf95af708ca85d20285906d3514 Mon Sep 17 00:00:00 2001 From: "snakedeploy-bot[bot]" <115615832+snakedeploy-bot[bot]@users.noreply.github.com> Date: Fri, 20 Sep 2024 04:07:16 +0000 Subject: [PATCH 1/2] perf: update bio/vep/annotate/environment.yaml. --- bio/vep/annotate/environment.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bio/vep/annotate/environment.yaml b/bio/vep/annotate/environment.yaml index 98137690f9..2b4e25d0c3 100644 --- a/bio/vep/annotate/environment.yaml +++ b/bio/vep/annotate/environment.yaml @@ -4,6 +4,6 @@ channels: - nodefaults dependencies: - ensembl-vep =112.0 - - bcftools =1.20 + - bcftools =1.21 - perl-encode-locale =1.05 - perl =5.32.1 From 4ce0b9a234ee19642c272232c2a2e68bc8a9cf95 Mon Sep 17 00:00:00 2001 From: "snakedeploy-bot[bot]" <115615832+snakedeploy-bot[bot]@users.noreply.github.com> Date: Fri, 20 Sep 2024 04:07:18 +0000 Subject: [PATCH 2/2] perf: update env pinning. --- bio/vep/annotate/environment.linux-64.pin.txt | 127 +++++++++--------- 1 file changed, 65 insertions(+), 62 deletions(-) diff --git a/bio/vep/annotate/environment.linux-64.pin.txt b/bio/vep/annotate/environment.linux-64.pin.txt index 9df96ea228..3a1dad04e6 100644 --- a/bio/vep/annotate/environment.linux-64.pin.txt +++ b/bio/vep/annotate/environment.linux-64.pin.txt @@ -3,72 +3,73 @@ # platform: linux-64 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 +https://conda.anaconda.org/conda-forge/noarch/_sysroot_linux-64_curr_repodata_hack-3-h69a702a_16.conda#1c005af0c6ff22814b7c52ee448d4bea https://conda.anaconda.org/bioconda/linux-64/blast-legacy-2.2.26-h9ee0642_3.tar.bz2#b7fe67ef984501e8089a142f1f58ab2f -https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda#2f4327a1cbe7f022401b236e915a5fef -https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-2.6.32-he073ed8_17.conda#d731b543793afc0433c4fd593e693fce +https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca054_0.conda#c27d1c142233b5bc9ca570c6e2e0c244 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.39-hcc3a1bd_1.conda#737be0d34c22d24432049ab7a3214de4 https://conda.anaconda.org/conda-forge/linux-64/libgcc-devel_linux-64-10.4.0-hd38fd1e_19.tar.bz2#b41d6540a78ba2518655eebcb0e41e20 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran-3.0.0-1.tar.bz2#d7c7e92a8ccc518709474dd3eda896b9 -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-hc0a3c3a_7.conda#53ebd4c833fa01cb2c6353e99f905406 -https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.10-4_cp310.conda#26322ec5d7712c3ded99dd656142b8ce -https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8 -https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h77fa898_7.conda#abf3fec87c2563697defa759dec3d639 -https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.12-he073ed8_17.conda#595db67e32b276298ff3d94d07d47fbf +https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.12-5_cp312.conda#0424ae29b104430108f5218a66db7260 +https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h8827d51_1.conda#8bfdead4e0fff0383ae4c9c50d0531bd +https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-3.10.0-h4a8ded7_16.conda#ff7f38675b226cfb855aebfc32a13e31 +https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.1.0-h77fa898_1.conda#23c255b008c4f2ae008f81edcabaca89 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d +https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.17-h4a8ded7_16.conda#223fe8a3ff6d5e78484a9d58eb34d055 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