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index.Rmd
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---
title: "TAGC_manhattanplot"
author: "Sahar Mozaffari"
date: "3/8/2017"
output: html_document
---
```{r readinfiles, include=FALSE, echo=FALSE}
library(qqman)
tab <- read.csv("TAGCpvaluesCarole.csv", header = T)
tab2 <- tab[,c(3,1,2,5)]
colnames(tab2) <- colnames(gwasResults)
```
#Bicolor manhattan plots to match slides
```{r bicolor_manhattanplot, echo=FALSE}
manhattan(tab2, col = c("#F2CBA4","#97595C"), suggestiveline=F)
manhattan(tab2, col = c("#6B717D","#C3999B"), suggestiveline=F)
```
#Colored Manhattan plot to match low hanging fruit figure
```{r hangingfruit_manhattanplot, echo=FALSE}
manhattan(tab2, col = c("#67B2C7","#F2BC4B",
"#75C9B1","#FF6D48",
"#E79292","#8B3131",
"#546D34","#95A672",
"#F6CE1C","#E66921",
"#5A4390","#BE92AF",
"#EB0033","#26A9E0",
"#B6B2A8","#507F83",
"#2F4858","#DC4500",
"#F6AF1E","#FAE6C8",
"#AF8257","#D5BDAA"), suggestiveline = F)
```
```{r info, echo=FALSE}
sessionInfo()
```