DESCRIPTION

Package: chromswitch
Title: An R package to detect chromatin state switches from epigenomic data
Version: 1.15.0
Date: 2017-09-20
Authors@R: c(person("Selin", "Jessa", email = "selinjessa@gmail.com", role = c("aut", "cre")),
             person(c("Claudia", "L."), "Kleinman", role = "aut"))  
Description: Chromswitch implements a flexible method to detect chromatin state
    switches between samples in two biological conditions in a specific genomic
    region of interest given peaks or chromatin state calls from ChIP-seq data.
Depends: R (>= 3.5.0),
    GenomicRanges (>= 1.26.4)
Imports:
    cluster (>= 2.0.6),
    Biobase (>= 2.36.2),
    BiocParallel (>= 1.8.2),
    dplyr (>= 0.5.0),
    gplots(>= 3.0.1),
    graphics,
    grDevices,
    IRanges (>= 2.4.8),
    lazyeval (>= 0.2.0),
    matrixStats (>= 0.52),
    magrittr (>= 1.5),
    methods,
    NMF (>= 0.20.6),
    rtracklayer (>= 1.36.4),
    S4Vectors (>= 0.23.19),
    stats,
    tidyr (>= 0.6.3)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Suggests: BiocStyle,
    DescTools (>= 0.99.19),
    devtools (>= 1.13.3),
    GenomeInfoDb (>= 1.16.0),
    knitr,
    rmarkdown,
    mclust (>= 5.3),
    testthat
RoxygenNote: 6.1.0
URL: https://github.com/sjessa/chromswitch
BugReports: https://github.com/sjessa/chromswitch/issues
biocViews: ImmunoOncology, MultipleComparison, Transcription, GeneExpression,
    DifferentialPeakCalling, HistoneModification, Epigenetics,
    FunctionalGenomics, Clustering