_quarto.yml

# These variables define the project; they may not need to be changed
project:
  type: book
  output-dir: _book

# These variables define the book contents - adjust them as necessary
book:
  title: "A Little Book of Data Analysis"
  reader-mode: true
  
  # The cover image and favicon; these may not need to be changed
  cover-image: sipbs_compbio_800.png
  favicon: icon_32.png
  
  # Sets the page footer text/images
  page-footer:
    left: |
      This book was written by Leighton Pritchard.
    right: |
      This book was built with <a href="https://quarto.org/">Quarto</a>.

  # Sets the URL for the repository
  repo-url: https://github.com/sipbs-compbiol/little-data-analysis-book
  repo-branch: main
  repo-actions: [edit, issue]

  # Sets author information and publication/presentation date
  author: "Leighton Pritchard"
  date: "01/05/2024"

  # Define chapters and sections here
  chapters:
    - index.qmd
    - intro.qmd

    - part: early-section.qmd
      chapters: 
        - causal-linear-regression.qmd
    
    - part: late-section.qmd
      chapters: 
        - webr-example.qmd
    
    - references.qmd

# Location of BibTeX format reference file; may not need to be changed
bibliography: references.bib

# Formatting and theme; may not need to be changed
format:
  html:
    theme: cosmo
    code-link: true
    
    author-meta: "Leighton Pritchard"
 
# Do not build PDF 
#  pdf:
#    documentclass: scrreprt

# Freeze output before pushing modifications to the repository when publishing
# Should not need changing
execute:
  freeze: auto