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Pan_ICI_iAtlas_Skin_Kidney_Meta.txt
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Pan_ICI_iAtlas_Skin_Kidney_Meta.txt
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sample Sequencing_Method Analyte Biopsy_Site Specific_Biopsy_Site Metastatic_Biopsy Sample_Treated Sample_Treatment Sample_Type Normal Primary_Tumor Read_Length Batch_ID Sequencer Sequencer_ID Sample_Prep FFPE Storage Storage_Method File_Prefix Run_Name Pre_On_Treatment_Match Somatic_Workflow_Match Center Patient_ID TCGA_Study TCGA_Subtype Cancer_Tissue Tissue_Subtype M_Stage Metastasized Clinical_Stage Response Responder Progression Clinical_Benefit OS OS.time OS.event PFI PFI.time PFI.event Age Sex Race Caucasian Asian African Nat_American Pac_Islander Likely_Caucasian ICI_Rx aPD1_Rx aCTLA4_Rx ICI_Pathway ICI_Target Non_ICI_Rx NeoICI_Rx ICI_Tx aPD1_Tx aCTLA4_Tx aCTLA4_aPD1_Tx Non_ICI_Tx NeoICI_Tx Prior_Rx Prior_ICI_Rx Prior_Tx Prior_ICI_Tx Prior_aCTLA4_Tx Prior_aMAPK_Tx Subsq_Rx Subsq_ICI_Rx Subsq_Tx Subsq_ICI_Tx Subsq_aCTLA4_aPD1_Tx Subsq_aCTLA4_Tx Subsq_aMAPK_Tx Patient_Name Dataset IMPRES TIDE_No_Benefits TIDE_Responder TIDE TIDE_IFNG TIDE_MSI TIDE_CD274 TIDE_CD8 TIDE_CTL_Flag TIDE_Dysfunction TIDE_Exclusion TIDE_MDSC TIDE_CAF TIDE_TAM_M2 TIDE_CTL Dataset_Cancer_Tissue...95 Dataset_Cancer_Tissue...96 Choueiri_CCR_2016_Kidney Gide_Cell_2019_Skin HugoLo_IPRES_2016_Skin IMmotion150_Kidney IMVigor210_Bladder Kim_NatMed_2018_Stomach Liu_NatMed_2019_Skin Miao_Science_2018_Kidney Prins_GBM_2019_Brain Riaz_Nivolumab_2017_Skin VanAllen_antiCTLA4_2015_Skin Zhao_NatMed_2019_Brain Feature
Gide_Cell_2019.iP01.ar.887 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208887 ar-887 iP01 NA Melanoma Institute Australia Gide_Cell_2019-iP01 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 689 0 1 15 1 42 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP01 Gide_Cell_2019 11 FALSE FALSE 1.18191888 -0.616365298 0.450454075 -0.839935762 -1.117608937 FALSE -0.274826585 1.18191888 0.08695544 -0.011028552 0.097903258 -0.920733732 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP01.ar.888 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208888 ar-888 iP01 NA Melanoma Institute Australia Gide_Cell_2019-iP01 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 689 0 1 15 1 42 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP01 Gide_Cell_2019 7 TRUE FALSE 1.76664354 -2.167809084 0.179667245 -2.470297877 -2.30750794 FALSE -1.194037747 1.76664354 0.16400189 0.01018701 0.088691624 -2.098403269 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP02.ar.898 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208898 ar-898 NA NA Melanoma Institute Australia Gide_Cell_2019-iP02 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 530 0 1 34 1 41 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP02 Gide_Cell_2019 10 TRUE FALSE 2.011015242 -1.453492716 0.073219637 -2.08675596 -1.518378342 FALSE 0.236616877 2.011015242 0.162550443 0.111204535 0.03076679 -1.395939694 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP04.ar.561 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR3262561 ar-561 NA NA Melanoma Institute Australia Gide_Cell_2019-iP04 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 129 0 1 39 1 48 Male NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP04 Gide_Cell_2019 9 FALSE FALSE 1.218071245 -0.057986365 0.790817104 -1.466487017 -1.794596098 FALSE -1.018112542 1.218071245 0.066099746 0.0322124 0.08366571 -1.3355231 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP06.ar.924 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208924 ar-924 NA NA Melanoma Institute Australia Gide_Cell_2019-iP06 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 108 1 1 41 1 75 Male NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP06 Gide_Cell_2019 11 FALSE FALSE 0.370506976 -0.546222716 0.411303908 -2.790542614 -0.704963111 FALSE -0.338869498 0.370506976 0.035944482 -0.008585123 0.032000282 -0.444116884 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP07.ar.562 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR3262562 ar-562 NA NA Melanoma Institute Australia Gide_Cell_2019-iP07 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 169 0 0 81 0 59 Male NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP07 Gide_Cell_2019 8 FALSE FALSE 0.326782341 1.223474816 0.787930851 -2.421001527 0.621424561 FALSE -0.909623356 0.326782341 0.066420363 -0.041660743 0.001325378 0.400397752 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP08.ar.926 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208926 ar-926 NA NA Melanoma Institute Australia Gide_Cell_2019-iP08 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 637 0 1 81 1 55 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP08 Gide_Cell_2019 10 FALSE FALSE 0.894782122 -1.521682531 0.442633539 -2.366106572 -1.394128374 FALSE -2.086376496 0.894782122 0.135801364 -0.106011212 0.080487384 -1.529993645 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP09.ar.927 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208927 ar-927 NA NA Melanoma Institute Australia Gide_Cell_2019-iP09 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 156 1 1 81 1 56 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP09 Gide_Cell_2019 9 FALSE FALSE 0.954148171 -0.945068477 0.776186405 -0.95534591 -1.860387259 FALSE -1.253547095 0.954148171 0.034399411 0.06485631 0.044462844 -1.66752319 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP10.ar.889 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208889 ar-889 NA NA Melanoma Institute Australia Gide_Cell_2019-iP10 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 176 1 1 81 1 51 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP10 Gide_Cell_2019 9 TRUE FALSE 2.357493846 -1.419221202 0.124549695 -2.899401133 -1.40774681 FALSE -1.418958835 2.357493846 0.169772266 0.106678185 0.081420702 -1.670408882 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP12.ar.890 RNA-Seq RNA Lung Lung TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208890 ar-890 NA NA Melanoma Institute Australia Gide_Cell_2019-iP12 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 293 0 1 82 1 55 Female NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP12 Gide_Cell_2019 11 FALSE FALSE 1.58452089 0.248016672 0.499422085 0.211149358 0.970230565 TRUE 1.58452089 -1.730341364 -0.205576356 -0.027775428 -0.018217743 1.061004346 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP13.ar.891 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208891 ar-891 iP13 NA Melanoma Institute Australia Gide_Cell_2019-iP13 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 357 1 0 108 0 68 Female NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP13 Gide_Cell_2019 11 FALSE FALSE 2.36665539 1.504672609 0.472022397 1.76826917 3.731992459 TRUE 2.36665539 -4.480833646 -0.425403762 -0.123416693 -0.115313083 3.638272484 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP13.ar.892 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208892 ar-892 iP13 NA Melanoma Institute Australia Gide_Cell_2019-iP13 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 357 1 0 108 0 68 Female NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP13 Gide_Cell_2019 12 FALSE FALSE 0.584543201 2.258293502 0.661273251 2.296146785 3.168727904 TRUE 0.584543201 -3.659289886 -0.212388121 -0.220189107 -0.115982799 2.697338769 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP14.ar.893 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208893 ar-893 NA NA Melanoma Institute Australia Gide_Cell_2019-iP14 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 691 0 0 123 0 47 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP14 Gide_Cell_2019 9 TRUE FALSE 2.029015804 -1.641065518 0.619176468 -1.637723704 -1.811893821 FALSE -1.476163889 2.029015804 0.152492649 0.048664627 0.102891592 -1.418590101 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP15.ar.894 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208894 ar-894 NA NA Melanoma Institute Australia Gide_Cell_2019-iP15 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 1 660 1 0 152 0 57 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP15 Gide_Cell_2019 11 FALSE FALSE 0.700503871 -0.93707043 0.529175782 -1.749559592 -1.335423889 FALSE -1.273750526 0.700503871 0.090555143 -0.03831952 0.048655742 -1.507540171 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP17.ar.895 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208895 ar-895 NA NA Melanoma Institute Australia Gide_Cell_2019-iP17 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 196 0 0 196 0 48 Female NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP17 Gide_Cell_2019 9 FALSE FALSE 2.651007688 -0.950635069 0.397756947 -2.865432263 -1.233749117 FALSE -0.330537085 2.651007688 0.180859304 0.162148696 0.053048078 -1.032690494 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP19.ar.896 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208896 ar-896 iP19 NA Melanoma Institute Australia Gide_Cell_2019-iP19 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 635 0 0 301 0 56 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP19 Gide_Cell_2019 11 FALSE FALSE 0.208128884 1.863583991 0.603733731 1.910384886 1.552835966 TRUE 0.208128884 -2.143159064 -0.119048489 -0.140354979 -0.055753483 1.654838251 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP19.ar.897 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208897 ar-897 iP19 NA Melanoma Institute Australia Gide_Cell_2019-iP19 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 635 0 0 301 0 56 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP19 Gide_Cell_2019 12 FALSE TRUE -0.776574357 -0.12544209 0.283474058 -0.017559247 0.100449013 FALSE -0.506355869 -0.776574357 -0.021033486 -0.142492801 0.053545409 -0.0975194 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP20.ar.899 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208899 ar-899 NA NA Melanoma Institute Australia Gide_Cell_2019-iP20 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 538 0 0 386 0 57 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP20 Gide_Cell_2019 11 FALSE FALSE 1.772557188 -0.097283104 0.439505087 0.154976909 0.56073434 TRUE 1.772557188 -3.687870526 -0.252379588 -0.325581095 0.019505539 0.93642177 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP21.ar.900 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208900 ar-900 NA NA Melanoma Institute Australia Gide_Cell_2019-iP21 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 410 0 0 410 0 63 Male NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP21 Gide_Cell_2019 13 FALSE FALSE 0.864388608 1.020720453 0.368181394 2.016877809 1.405158828 TRUE 0.864388608 -0.648974765 -0.007734117 -0.031545114 -0.047571227 1.270340642 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP23.ar.901 RNA-Seq RNA Brain Brain TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208901 ar-901 NA NA Melanoma Institute Australia Gide_Cell_2019-iP23 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 506 0 0 506 0 51 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP23 Gide_Cell_2019 9 FALSE FALSE 0.404213841 -1.317888681 0.624233583 -2.650407431 -1.888766476 FALSE -1.615069872 0.404213841 0.068151077 -0.092188502 0.07157072 -1.595480543 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP24.ar.902 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208902 ar-902 NA NA Melanoma Institute Australia Gide_Cell_2019-iP24 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1203 0 0 509 0 34 Male NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP24 Gide_Cell_2019 12 FALSE FALSE 0.302402857 -0.374169925 0.362399499 0.196120196 0.570730731 FALSE -0.41795005 0.302402857 -8.86e-4 0.010780383 0.044625706 0.078094863 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP25.ar.903 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208903 ar-903 NA NA Melanoma Institute Australia Gide_Cell_2019-iP25 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 1 518 1 0 518 0 67 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP25 Gide_Cell_2019 9 TRUE FALSE 2.592838349 -1.551745528 0.361024716 -1.950656264 -1.364415393 FALSE -0.617540037 2.592838349 0.168473168 0.189490229 0.043998335 -1.157524536 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP26.ar.904 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208904 ar-904 NA NA Melanoma Institute Australia Gide_Cell_2019-iP26 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 544 0 0 544 0 75 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP26 Gide_Cell_2019 11 FALSE FALSE 0.424771102 0.375374476 0.238755483 -0.226668678 1.584395008 TRUE 0.424771102 -0.323065814 0.047988111 -0.120861675 0.011350347 1.601737338 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP27.ar.905 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208905 ar-905 NA NA Melanoma Institute Australia Gide_Cell_2019-iP27 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 546 0 0 546 0 49 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP27 Gide_Cell_2019 13 FALSE FALSE 0.750469536 2.600630464 0.633275565 2.509447505 1.987561548 TRUE 0.750469536 -2.181283331 -0.067620375 -0.144024175 -0.122317686 2.163612953 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP27.ar.906 RNA-Seq RNA Abdomen Abdomen TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208906 ar-906 NA NA Melanoma Institute Australia Gide_Cell_2019-iP27 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 546 0 0 546 0 49 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP27 Gide_Cell_2019 13 FALSE FALSE 0.479591071 2.014052816 0.690489971 1.579798332 1.625921425 TRUE 0.479591071 -1.676368512 -0.05815691 -0.10700445 -0.082396394 1.651952773 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP32.ar.907 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208907 ar-907 NA NA Melanoma Institute Australia Gide_Cell_2019-iP32 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 597 0 0 597 0 71 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP32 Gide_Cell_2019 11 FALSE TRUE -2.247211079 1.87405579 0.648405725 1.258215147 0.363276575 FALSE -0.35966437 -2.247211079 -0.063958605 -0.238090267 -0.063323235 1.451194991 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP33.ar.908 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208908 ar-908 iP33 NA Melanoma Institute Australia Gide_Cell_2019-iP33 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 609 0 0 609 0 73 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP33 Gide_Cell_2019 12 FALSE FALSE 2.063501197 2.522673052 0.500013293 2.655820443 1.434305473 TRUE 2.063501197 -2.039118516 -0.231222657 0.081083033 -0.156514012 2.396680557 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP33.ar.909 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208909 ar-909 iP33 NA Melanoma Institute Australia Gide_Cell_2019-iP33 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 609 0 0 609 0 73 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP33 Gide_Cell_2019 10 FALSE FALSE 1.039586164 -0.211559356 0.640269573 -0.283862474 -1.404592576 FALSE -0.982396369 1.039586164 0.093403394 0.012703584 0.028262918 -1.089084165 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP34.ar.910 RNA-Seq RNA Lung Lung TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208910 ar-910 NA NA Melanoma Institute Australia Gide_Cell_2019-iP34 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 623 0 0 623 0 51 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP34 Gide_Cell_2019 7 FALSE FALSE 0.503875564 -0.63044983 0.348501076 -1.078626528 -0.263971196 FALSE 0.790188894 0.503875564 0.036505861 0.049877046 -0.01738044 -0.347470285 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP35.ar.911 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208911 ar-911 iP35 NA Melanoma Institute Australia Gide_Cell_2019-iP35 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 627 0 0 627 0 72 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP35 Gide_Cell_2019 14 FALSE FALSE 0.287875313 0.522285465 0.696815975 0.009767246 -0.403972165 FALSE -0.503922318 0.287875313 0.072903049 -0.060853 0.024596968 -0.314969881 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP35.ar.912 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208912 ar-912 iP35 NA Melanoma Institute Australia Gide_Cell_2019-iP35 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 627 0 0 627 0 72 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP35 Gide_Cell_2019 13 FALSE FALSE 0.222068611 0.668111285 0.743142212 -0.085860154 -0.228550582 FALSE -0.741213626 0.222068611 0.042019196 -0.088708357 0.068948419 -0.855994433 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP36.ar.913 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208913 ar-913 iP36 NA Melanoma Institute Australia Gide_Cell_2019-iP36 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 637 0 0 637 0 74 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP36 Gide_Cell_2019 13 FALSE FALSE 1.849906712 2.38162432 0.737464317 2.215991933 3.372102767 TRUE 1.849906712 -4.022126217 -0.234661221 -0.266816769 -0.110922453 3.209099444 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP36.ar.914 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208914 ar-914 iP36 NA Melanoma Institute Australia Gide_Cell_2019-iP36 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 637 0 0 637 0 74 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP36 Gide_Cell_2019 12 FALSE FALSE 0.712210872 1.324857227 0.672783847 1.563156851 1.563096522 TRUE 0.712210872 -1.302224331 0.006613683 -0.102581159 -0.103502588 1.638923478 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP37.ar.915 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208915 ar-915 NA NA Melanoma Institute Australia Gide_Cell_2019-iP37 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 637 0 0 637 0 76 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP37 Gide_Cell_2019 13 FALSE FALSE 1.136636007 2.6972958399999998 0.666741843 2.071059391 1.861339285 TRUE 1.136636007 -3.155174347 -0.183335842 -0.143932443 -0.142438984 1.906159439 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP38.ar.916 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208916 ar-916 NA NA Melanoma Institute Australia Gide_Cell_2019-iP38 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 650 0 0 650 0 59 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP38 Gide_Cell_2019 11 TRUE FALSE 1.779264888 -1.430239633 0.378075484 -1.619577309 -1.601497249 FALSE -0.063325679 1.779264888 -0.019342838 0.223367777 0.082279804 -1.206299979 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP44.ar.918 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208918 ar-918 NA NA Melanoma Institute Australia Gide_Cell_2019-iP44 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 695 0 0 695 0 68 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP44 Gide_Cell_2019 11 FALSE FALSE 1.008534472 0.874993888 0.413722568 1.701466435 2.151528022 TRUE 1.008534472 0.749330643 -0.028216607 0.228733375 -0.060241819 1.299583349 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP45.ar.919 RNA-Seq RNA Mucosa Mucosa TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208919 ar-919 NA NA Melanoma Institute Australia Gide_Cell_2019-iP45 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 721 0 0 721 0 70 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP45 Gide_Cell_2019 9 TRUE FALSE 3.075059048 -1.535730303 0.289989297 -1.870044178 -1.487976382 FALSE -0.531917723 3.075059048 0.15167278 0.291619656 0.027056181 -1.236361576 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP46.ar.920 RNA-Seq RNA Lung Lung TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208920 ar-920 NA NA Melanoma Institute Australia Gide_Cell_2019-iP46 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 721 0 0 721 0 54 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP46 Gide_Cell_2019 12 FALSE FALSE 1.271507384 0.679303418 0.601583805 0.067660789 1.003982369 TRUE 1.271507384 -0.929325077 -0.063263107 -0.011229298 -0.054399688 1.097881081 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP47.ar.921 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208921 ar-921 NA NA Melanoma Institute Australia Gide_Cell_2019-iP47 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 732 0 0 732 0 24 Female NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP47 Gide_Cell_2019 11 FALSE TRUE -0.062304523 2.38630562 0.834376552 3.211704653 2.021042814 TRUE -0.062304523 -1.106589452 -0.032955447 -0.074965212 -0.054710315 1.549014209 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP49.ar.922 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208922 ar-922 NA NA Melanoma Institute Australia Gide_Cell_2019-iP49 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 775 0 0 775 0 36 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP49 Gide_Cell_2019 9 FALSE FALSE 0.919292576 -0.560700508 0.236032911 -1.108472881 -0.512471573 FALSE -1.281779856 0.919292576 0.045816288 0.054080929 0.046103293 -0.495557257 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.iP50.ar.923 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208923 ar-923 NA NA Melanoma Institute Australia Gide_Cell_2019-iP50 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 904 0 0 904 0 68 Male NA NA NA NA NA NA TRUE Ipi + Pembro Pembro Ipi CTLA4 + PD1 CTLA4 + PD1 None None TRUE TRUE TRUE TRUE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA iP50 Gide_Cell_2019 9 FALSE TRUE -0.048823567 1.374786793 0.482595508 2.551305172 0.655788859 TRUE -0.048823567 1.154628103 0.133399141 0.119945816 -0.064484982 0.463117994 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD02.ar.941 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208941 ar-941 NA NA Melanoma Institute Australia Gide_Cell_2019-PD02 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 65 1 1 13 1 61 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD02 Gide_Cell_2019 11 FALSE FALSE 0.03288327 -0.18688857 0.380274826 -0.197890218 -0.772958461 FALSE 1.171606913 0.03288327 -0.228750527 0.271541651 -0.006919738 -0.222881981 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD03.ar.949 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208949 ar-949 NA NA Melanoma Institute Australia Gide_Cell_2019-PD03 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 59 1 1 23 1 50 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD03 Gide_Cell_2019 9 FALSE FALSE 0.773662076 -2.119369866 0.747144977 -2.015343869 -2.181474479 FALSE -0.133947014 0.773662076 0.007366042 0.052270734 0.063906691 -2.044483783 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD04.ar.564 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR3262564 ar-564 NA NA Melanoma Institute Australia Gide_Cell_2019-PD04 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 22 1 1 23 1 84 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD04 Gide_Cell_2019 12 FALSE FALSE 0.880727404 0.849188606 0.764815946 -0.136716557 1.144953834 TRUE 0.880727404 -0.88738114 -0.151897047 0.015140738 0.008474317 1.584769334 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD05.ar.968 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208968 ar-968 NA NA Melanoma Institute Australia Gide_Cell_2019-PD05 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 155 1 1 39 1 67 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD05 Gide_Cell_2019 10 FALSE FALSE 0.788644159 -0.933180037 0.601700672 -0.99022745 -1.571172091 FALSE -1.316301904 0.788644159 0.066908048 0.012216064 0.037570733 -1.683490384 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD06.ar.973 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208973 ar-973 NA NA Melanoma Institute Australia Gide_Cell_2019-PD06 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 94 1 1 42 1 68 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD06 Gide_Cell_2019 13 FALSE TRUE -2.183309842 -0.077795138 0.606988569 0.125105617 1.099668542 FALSE 0.102620791 -2.183309842 -0.084597003 -0.23926172 -0.01159124 0.72642977500000006 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD07.ar.974 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208974 ar-974 NA NA Melanoma Institute Australia Gide_Cell_2019-PD07 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 80 1 1 47 1 57 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD07 Gide_Cell_2019 11 FALSE TRUE -1.113068685 2.242338317 0.611537289 1.2534189 1.592970955 FALSE 0.554871177 -1.113068685 -0.026132565 -0.046083765 -0.107642944 0.880895746 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD08.ar.565 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR3262565 ar-565 PD08 NA Melanoma Institute Australia Gide_Cell_2019-PD08 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 58 1 1 58 1 85 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD08 Gide_Cell_2019 7 TRUE FALSE 1.869023506 -2.476446297 0.31233569 -2.332167857 -2.329081052 FALSE -1.573379458 1.869023506 0.176153699 -0.029542629 0.124928463 -2.186519052 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD08.ar.975 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208975 ar-975 PD08 NA Melanoma Institute Australia Gide_Cell_2019-PD08 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 58 1 1 58 1 85 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD08 Gide_Cell_2019 8 TRUE FALSE 1.632623797 -1.454293286 0.31476728 -1.876933929 -1.145272834 FALSE -1.035552503 1.632623797 0.069056563 0.109285483 0.070291404 -1.051725003 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD09.ar.977 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208977 ar-977 NA NA Melanoma Institute Australia Gide_Cell_2019-PD09 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 99 1 1 71 1 70 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD09 Gide_Cell_2019 10 FALSE FALSE 0.489100145 -0.724895486 0.538143082 0.032415057 -0.779777625 FALSE 0.318989613 0.489100145 -0.033649819 0.110656761 0.021126554 -0.502208059 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD10.ar.928 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208928 ar-928 PD10 NA Melanoma Institute Australia Gide_Cell_2019-PD10 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 551 0 1 76 1 90 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD10 Gide_Cell_2019 12 FALSE FALSE 0.359070614 0.508167615 0.57690285 0.144049229 0.175414747 FALSE 0.230430245 0.359070614 -0.017908225 0.031139067 0.036921454 -0.103839559 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD10.ar.929 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208929 ar-929 PD10 NA Melanoma Institute Australia Gide_Cell_2019-PD10 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 551 0 1 76 1 90 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD10 Gide_Cell_2019 12 FALSE FALSE 0.864459968 -0.821278239 0.568730184 -0.862869554 -1.334331982 FALSE -1.429087584 0.864459968 0.057989281 -0.022711899 0.075724399 -1.407952194 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD11.ar.930 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208930 ar-930 NA NA Melanoma Institute Australia Gide_Cell_2019-PD11 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 166 1 1 78 1 66 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD11 Gide_Cell_2019 10 FALSE FALSE 0.118198416 -1.520198113 0.8188159 -0.927752037 -0.723343922 FALSE 0.736738714 0.118198416 -0.071189706 0.03035927 0.068069135 -0.874940628 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD12.ar.931 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208931 ar-931 NA NA Melanoma Institute Australia Gide_Cell_2019-PD12 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 1 199 1 0 80 0 52 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD12 Gide_Cell_2019 7 TRUE FALSE 1.986947449 -1.79496058 0.228919954 -1.711932278 -1.297151934 FALSE -0.048446124 1.986947449 0.152713696 0.097748703 0.057293465 -1.443622522 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD13.ar.932 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208932 ar-932 PD13 NA Melanoma Institute Australia Gide_Cell_2019-PD13 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 96 1 1 82 1 69 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD13 Gide_Cell_2019 12 FALSE FALSE 1.072247759 -0.961077434 0.701668184 -0.567778001 -1.830770465 FALSE -1.457612783 1.072247759 0.185462349 -0.054839427 0.015909614 -1.466565297 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD13.ar.933 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208933 ar-933 PD13 NA Melanoma Institute Australia Gide_Cell_2019-PD13 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 96 1 1 82 1 69 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD13 Gide_Cell_2019 10 TRUE FALSE 1.480458202 -1.619942882 0.78580933 -1.213657383 -1.333109553 FALSE -1.211014831 1.480458202 0.151527008 -0.041391334 0.104523561 -1.573378748 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD14.ar.934 RNA-Seq RNA Mucosa Mucosa TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208934 ar-934 NA NA Melanoma Institute Australia Gide_Cell_2019-PD14 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 993 1 1 83 1 58 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD14 Gide_Cell_2019 8 TRUE FALSE 1.437824789 -1.78844475 0.193934283 -1.008348977 -2.334842375 FALSE -0.602285287 1.437824789 0.168321771 -0.031076062 0.064199123 -2.180409411 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD15.ar.935 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208935 ar-935 NA NA Melanoma Institute Australia Gide_Cell_2019-PD15 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 300 1 1 84 1 76 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD15 Gide_Cell_2019 8 FALSE FALSE 0.074802216 -1.753727346 0.443345954 -0.847815644 -1.19056857 FALSE 0.498018113 0.074802216 -0.030753493 -0.005826122 0.054198997 -1.23218213 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD16.ar.936 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208936 ar-936 NA NA Melanoma Institute Australia Gide_Cell_2019-PD16 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 169 1 1 84 1 55 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD16 Gide_Cell_2019 11 TRUE FALSE 3.242105114 -1.926647986 0.204497429 -2.356776534 -2.27231686 FALSE -0.555146427 3.242105114 0.164720286 0.276440069 0.054842009 -1.910646736 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD17.ar.937 RNA-Seq RNA Spine Spine TRUE TRUE On Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208937 ar-937 NA NA Melanoma Institute Australia Gide_Cell_2019-PD17 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 258 1 1 96 1 37 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD17 Gide_Cell_2019 10 FALSE FALSE 1.558608125 1.350877917 0.381217239 -0.005918632 1.334425502 TRUE 1.558608125 -1.199620441 -0.183396283 0.129295694 -0.117175278 1.822453282 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD17.ar.938 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208938 ar-938 NA NA Melanoma Institute Australia Gide_Cell_2019-PD17 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 258 1 1 96 1 37 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD17 Gide_Cell_2019 10 FALSE FALSE 1.651740574 0.23741888 0.271740333 0.256472758 -0.348029456 FALSE 0.436925513 1.651740574 0.06819072 0.202989278 -0.013232192 0.039202878 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD18.ar.939 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208939 ar-939 NA NA Melanoma Institute Australia Gide_Cell_2019-PD18 SKCM NA Skin NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 228 1 1 100 1 62 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD18 Gide_Cell_2019 11 TRUE FALSE 1.586679467 -1.036119023 0.524042242 0.407844732 -1.486024843 FALSE -0.283615267 1.586679467 0.076592975 0.153751271 0.008544856 -1.429063134 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD19.ar.940 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208940 ar-940 NA NA Melanoma Institute Australia Gide_Cell_2019-PD19 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 1 385 1 0 125 0 54 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD19 Gide_Cell_2019 12 TRUE FALSE 1.197852946 -1.765210121 0.516785473 -1.543152345 -2.320439471 FALSE -1.389703594 1.197852946 0.156978245 -0.04091281 0.04086519 -2.210324043 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD21.ar.942 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208942 ar-942 NA NA Melanoma Institute Australia Gide_Cell_2019-PD21 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 1 551 1 0 166 0 67 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD21 Gide_Cell_2019 9 FALSE FALSE 0.363217356 -1.560221739 0.509062353 -0.460942038 -1.655907762 FALSE -0.714308237 0.363217356 0.002202172 0.080066643 -0.040160625 -1.5719966 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD23.ar.943 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208943 ar-943 NA NA Melanoma Institute Australia Gide_Cell_2019-PD23 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 1 191 1 0 191 0 40 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD23 Gide_Cell_2019 10 TRUE FALSE 1.751328763 -1.003216638 0.418751673 0.455653401 -1.038681197 FALSE 0.411815771 1.751328763 0.053672351 0.205672593 0.009118618 -1.196220085 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD25.ar.944 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208944 ar-944 PD25 NA Melanoma Institute Australia Gide_Cell_2019-PD25 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 897 1 0 271 0 49 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD25 Gide_Cell_2019 12 FALSE FALSE 1.705961953 1.450232966 0.569574885 1.627722897 1.843396096 TRUE 1.705961953 -1.399150625 -0.130032008 -0.030116939 -0.054343613 1.876069587 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD25.ar.945 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208945 ar-945 PD25 NA Melanoma Institute Australia Gide_Cell_2019-PD25 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 897 1 0 271 0 49 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD25 Gide_Cell_2019 13 FALSE FALSE 1.377425487 -0.098035978 0.373594401 -0.249230991 0.782874592 FALSE 0.055697615 1.377425487 0.068118175 0.072172321 0.061962885 0.312330092 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD27.ar.946 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208946 ar-946 NA NA Melanoma Institute Australia Gide_Cell_2019-PD27 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 1067 1 0 314 0 76 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD27 Gide_Cell_2019 10 TRUE FALSE 1.46505826 -1.96594739 0.092900706 -1.337833892 -1.833973123 FALSE -1.068284617 1.46505826 0.160443889 -0.050254377 0.104358661 -1.957719634 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD29.ar.947 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208947 ar-947 PD29 NA Melanoma Institute Australia Gide_Cell_2019-PD29 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 1 825 1 0 335 0 55 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD29 Gide_Cell_2019 11 FALSE FALSE 0.442250858 -0.83216876 0.643884605 0.206450197 -0.894312577 FALSE -1.598463554 0.442250858 0.109648012 -0.075548258 0.021376918 -0.987521457 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD29.ar.948 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208948 ar-948 PD29 NA Melanoma Institute Australia Gide_Cell_2019-PD29 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 1 825 1 0 335 0 55 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD29 Gide_Cell_2019 9 TRUE FALSE 1.153776217 -2.494683347 0.515302 -1.846186622 -2.557980947 FALSE -1.600778268 1.153776217 0.114903394 -0.017295158 0.062827892 -2.423825495 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD30.ar.563 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR3262563 ar-563 NA NA Melanoma Institute Australia Gide_Cell_2019-PD30 SKCM NA Skin NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 581 0 0 358 0 86 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD30 Gide_Cell_2019 10 TRUE FALSE 2.347681047 -1.180938265 0.643272079 0.463244403 -1.598097581 FALSE -0.857678823 2.347681047 0.184736086 0.149872863 0.004702733 -1.224973327 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD34.ar.951 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208951 ar-951 NA NA Melanoma Institute Australia Gide_Cell_2019-PD34 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 878 1 0 544 0 78 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD34 Gide_Cell_2019 10 FALSE TRUE -0.520020839 -0.108137052 0.227942954 0.027818012 0.049190129 FALSE 0.157878906 -0.520020839 0.00522995 -0.037010101 -0.044025374 -0.127988043 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD35.ar.952 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208952 ar-952 NA NA Melanoma Institute Australia Gide_Cell_2019-PD35 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1091 0 0 586 0 55 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD35 Gide_Cell_2019 13 FALSE FALSE 1.295022179 1.815838026 0.746894919 2.42529242 0.993505681 TRUE 1.295022179 -1.755245955 -0.131951081 -0.07568121 -0.054843769 1.006396177 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD36.ar.953 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208953 ar-953 NA NA Melanoma Institute Australia Gide_Cell_2019-PD36 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 607 1 0 590 0 76 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD36 Gide_Cell_2019 10 FALSE TRUE -0.775153752 -0.484884231 0.667266833 -0.174456054 -0.647017542 FALSE -0.306652309 -0.775153752 -0.053025319 -0.050145443 -0.023457993 -0.773214207 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD38.ar.954 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208954 ar-954 NA NA Melanoma Institute Australia Gide_Cell_2019-PD38 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1547 0 0 755 0 69 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD38 Gide_Cell_2019 13 FALSE TRUE -1.011628304 2.454763056 0.333634442 2.295225342 1.755406442 FALSE 1.826833588 -1.011628304 -0.08945702 0.083344811 -0.124877971 1.1275802 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD40.ar.956 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208956 ar-956 NA NA Melanoma Institute Australia Gide_Cell_2019-PD40 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 845 0 0 845 0 78 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD40 Gide_Cell_2019 10 FALSE FALSE 0.77015018 0.725454385 0.525148673 0.306224643 1.483675488 TRUE 0.77015018 -1.440011328 -0.143800339 0.006510277 -0.077217247 0.924224083 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD41.ar.957 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208957 ar-957 PD41 NA Melanoma Institute Australia Gide_Cell_2019-PD41 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 886 0 0 870 0 61 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD41 Gide_Cell_2019 12 FALSE FALSE 1.781869753 1.946759938 0.465709353 2.078462969 2.258532558 TRUE 1.781869753 -0.947865127 -0.186423595 0.124474791 -0.0657181 2.451145414 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD41.ar.958 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208958 ar-958 PD41 NA Melanoma Institute Australia Gide_Cell_2019-PD41 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 886 0 0 870 0 61 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD41 Gide_Cell_2019 12 FALSE FALSE 0.83736642 -0.010892761 0.484244484 0.752860375 -0.83684966 FALSE -0.850121235 0.83736642 0.089483426 0.024513067 0.006622848 -0.568911509 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD42.ar.959 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208959 ar-959 NA NA Melanoma Institute Australia Gide_Cell_2019-PD42 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 891 0 0 891 0 59 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD42 Gide_Cell_2019 10 TRUE FALSE 1.848665589 -1.408806671 0.310790135 -1.268779985 -1.145134573 FALSE 0.245473799 1.848665589 0.07202558 0.181009797 0.040245488 -1.056343983 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD44.ar.960 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208960 ar-960 NA NA Melanoma Institute Australia Gide_Cell_2019-PD44 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1075 0 0 1075 0 45 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD44 Gide_Cell_2019 13 FALSE FALSE 1.546912495 0.760586903 0.727216029 1.237024238 2.052944331 TRUE 1.546912495 -2.208624023 -0.15149562 -0.092130807 -0.094877889000000007 1.961680699 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD45.ar.961 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208961 ar-961 NA NA Melanoma Institute Australia Gide_Cell_2019-PD45 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1085 0 0 1085 0 82 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD45 Gide_Cell_2019 12 FALSE FALSE 1.513798709 0.404536114 0.405342854 0.862379323 2.412731346 TRUE 1.513798709 -3.095228538 -0.276983576 -0.118866628 -0.066323184 2.003062258 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD46.ar.962 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208962 ar-962 NA NA Melanoma Institute Australia Gide_Cell_2019-PD46 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1098 0 0 1098 0 71 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD46 Gide_Cell_2019 10 FALSE TRUE -0.635869343 0.448754247 0.783808255 0.65607829 0.83092046 FALSE -0.243997819 -0.635869343 -0.021377438 -0.053624703 -0.016814099 0.346695038 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD47.ar.963 RNA-Seq RNA Skin Skin NA TRUE On NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208963 ar-963 PD47 NA Melanoma Institute Australia Gide_Cell_2019-PD47 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1174 0 0 1174 0 62 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD47 Gide_Cell_2019 12 FALSE TRUE -0.312227736 1.054824497 0.590280618 1.864939177 1.917715299 TRUE -0.312227736 -2.201646729 -0.192798173 -0.119769997 -0.016316036 1.400882335 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD47.ar.964 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208964 ar-964 PD47 NA Melanoma Institute Australia Gide_Cell_2019-PD47 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1174 0 0 1174 0 62 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD47 Gide_Cell_2019 13 FALSE TRUE -1.96666011 1.277579617 0.427233639 1.773503617 0.690205746 FALSE 0.941295386 -1.96666011 -0.315021305 0.059671892 -0.015614078 0.855380067 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD48.ar.965 RNA-Seq RNA Lymph Node Lymph Node TRUE TRUE On Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208965 ar-965 NA NA Melanoma Institute Australia Gide_Cell_2019-PD48 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1189 0 0 1189 0 40 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD48 Gide_Cell_2019 13 FALSE FALSE 2.471079651 2.774698121 0.697821752 2.977122113 3.811409167 TRUE 2.471079651 -4.700766261 -0.344353858 -0.208468849 -0.153499282 3.79703538 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD48.ar.966 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208966 ar-966 NA NA Melanoma Institute Australia Gide_Cell_2019-PD48 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1189 0 0 1189 0 40 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD48 Gide_Cell_2019 11 FALSE FALSE 1.401183797 1.816534969 0.723432128 2.129104964 2.167393882 TRUE 1.401183797 -2.5640905960000002 -0.084518157 -0.136584279 -0.166350283 2.416169643 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD49.ar.967 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208967 ar-967 NA NA Melanoma Institute Australia Gide_Cell_2019-PD49 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 1328 0 0 1328 0 72 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD49 Gide_Cell_2019 10 FALSE FALSE 0.743053896 -0.287396408 0.505409793 0.048159258 -0.331018348 FALSE -0.87510867 0.743053896 0.052704929 0.038399914 0.027428262 -0.445743483 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD50.ar.969 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208969 ar-969 NA NA Melanoma Institute Australia Gide_Cell_2019-PD50 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 1342 0 0 1342 0 86 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD50 Gide_Cell_2019 11 FALSE FALSE 1.182492591 0.618857285 0.470322054 1.972017159 0.080313384 FALSE -0.339818313 1.182492591 0.147709414 0.119209228 -0.079418566 0.087847163 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD52.ar.970 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208970 ar-970 NA NA Melanoma Institute Australia Gide_Cell_2019-PD52 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1553 0 0 1553 0 63 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD52 Gide_Cell_2019 12 FALSE TRUE -1.595397433 0.109143029 0.607124111 1.103793175 0.123199899 FALSE -0.148509561 -1.595397433 -0.081147118 -0.020538221 -0.133471375 0.015886946 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD53.ar.971 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208971 ar-971 NA NA Melanoma Institute Australia Gide_Cell_2019-PD53 SKCM NA Skin NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 1589 0 0 1589 0 71 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD53 Gide_Cell_2019 11 FALSE TRUE -1.515507859 0.206705927 0.122702878 1.410037717 2.233459198 FALSE 2.234998618 -1.515507859 -0.10386738 -0.070967054 -0.046914196 1.339312926 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
Gide_Cell_2019.PD54.ar.972 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA NA NA HiSeq 2500 NA TruSeq RNA Access Library Prep Kit TRUE FFPE AllPrep DNA/RNA FFPE Kit ERR2208972 ar-972 NA NA Melanoma Institute Australia Gide_Cell_2019-PD54 SKCM NA Skin NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1603 0 0 1603 0 52 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA NA NA NA NA NA NA NA NA PD54 Gide_Cell_2019 12 FALSE TRUE -0.416987893 1.019259845 0.508708687 0.53129693 0.291304261 FALSE -0.671310382 -0.416987893 0.088127317 -0.111971305 -0.046026841 0.135300199 Gide_Cell_2019_Skin 0 0 1 0 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt01.ar.279 RNA-Seq RNA Skin Skin: Leg NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184279 ar-279 NA Pt01 NA HugoLo_IPRES_2016-Pt01 SKCM RAS Skin NA M1b TRUE IV Progressive Disease FALSE TRUE FALSE 1 607 1 NA NA NA 66 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt01 HugoLo_IPRES_2016 7 FALSE FALSE 0.108713066 0.423044999 0.604803787 -0.033133865 0.563497388 TRUE 0.108713066 1.034269611 -0.037242802 0.210847823 0.005612005 0.407865581 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt02.ar.280 RNA-Seq RNA Lung Lung TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184280 ar-280 NA Pt02 NA HugoLo_IPRES_2016-Pt02 SKCM NF1 Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 0 927 0 NA NA NA 55 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt02 HugoLo_IPRES_2016 8 FALSE TRUE -1.503784451 0.762388251 0.913670871 0.530683926 0.344723884 FALSE -0.305963373 -1.503784451 -0.129505815 -0.0753213 -0.020422857 -0.258477917 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt04.ar.281 RNA-Seq RNA Endocrine Endocrine: Adrenal TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184281 ar-281 NA Pt04 NA HugoLo_IPRES_2016-Pt04 SKCM BRAF Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 0 948 0 NA NA NA 62 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt04 HugoLo_IPRES_2016 8 FALSE TRUE -0.128178198 0.009029907 0.139747316 0.004343985 -0.212193438 FALSE -0.675112883 -0.128178198 0.028394626 -0.111436631 0.064252788 -0.240691519 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt05.ar.282 RNA-Seq RNA Skin Skin: Chest NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184282 ar-282 NA Pt05 NA HugoLo_IPRES_2016-Pt05 SKCM BRAF Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 0 439 0 NA NA NA 61 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt05 HugoLo_IPRES_2016 7 FALSE FALSE 0.862879804 -2.303514708 0.670661305 -0.945326601 -1.943403499 FALSE -1.683039479 0.862879804 0.105586107 -0.054015797 0.062763118 -2.07164674 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt06.ar.283 RNA-Seq RNA Skin Skin: Arm NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184283 ar-283 NA Pt06 NA HugoLo_IPRES_2016-Pt06 SKCM BRAF Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 0 882 0 NA NA NA 51 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt06 HugoLo_IPRES_2016 7 FALSE TRUE -0.632030744 -1.762726166 0.637052325 -1.09657192 -1.933893498 FALSE -0.385653501 -0.632030744 -0.10709383 -0.005997131 0.01624478 -1.718675406 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt07.ar.284 RNA-Seq RNA Skin Skin: Head NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184284 ar-284 NA Pt07 NA HugoLo_IPRES_2016-Pt07 SKCM TripleWt Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 662 1 NA NA NA 55 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt07 HugoLo_IPRES_2016 9 FALSE FALSE 0.763134917 -0.878281787 0.432717309 -0.939726673 -1.07993944 FALSE -0.974109835 0.763134917 0.072065348 -0.01251943 0.051674857 -0.856679247 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt08.ar.285 RNA-Seq RNA Skin Skin: Leg NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184285 ar-285 NA Pt08 NA HugoLo_IPRES_2016-Pt08 SKCM BRAF Skin NA M1a TRUE IV Complete Response TRUE FALSE TRUE 0 NA 0 NA NA NA 69 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt08 HugoLo_IPRES_2016 7 FALSE FALSE 0.466079926 -0.288144371 0.724192255 -0.001082625 -0.664576793 FALSE -0.665353595 0.466079926 0.005924658 0.087604242 -0.032752673 -0.666436958 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt09.ar.286 RNA-Seq RNA Skin Skin: Arm FALSE FALSE Pre Primary Tumor FALSE TRUE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184286 ar-286 NA Pt09 NA HugoLo_IPRES_2016-Pt09 SKCM BRAF Skin NA M0 FALSE III Complete Response TRUE FALSE TRUE 0 1054 0 NA NA NA 68 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt09 HugoLo_IPRES_2016 7 FALSE FALSE 0.827032546 0.700826326 0.861353102 -0.144372065 0.788406252 FALSE -0.366215446 0.827032546 0.056571564 0.037335607 0.020070023 0.748287933 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt10.ar.287 RNA-Seq RNA Skin Skin: Neck NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184287 ar-287 NA Pt10 NA HugoLo_IPRES_2016-Pt10 SKCM TripleWt Skin NA M1a TRUE IV Progressive Disease FALSE TRUE FALSE 0 387 0 NA NA NA 60 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt10 HugoLo_IPRES_2016 8 TRUE FALSE 2.957669441 -2.261234857 0.293590732 -1.365603952 -1.764015525 FALSE -0.647210974 2.957669441 0.216060763 0.21418893 0.020782125 -1.792142353 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt12.ar.288 RNA-Seq RNA Skin Skin: Abdomen NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184288 ar-288 NA Pt12 NA HugoLo_IPRES_2016-Pt12 SKCM BRAF Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 327 1 NA NA NA 59 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt12 HugoLo_IPRES_2016 8 TRUE FALSE 1.674449131 -1.743467663 0.488532355 -1.187050674 -1.923376713 FALSE -0.300195326 1.674449131 0.11961861 0.146469304 -0.003022149 -1.442148649 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt13.ar.289 RNA-Seq RNA Skin Skin: Back NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184289 ar-289 NA Pt13 NA HugoLo_IPRES_2016-Pt13 SKCM TripleWt Skin NA M1c TRUE IV Complete Response TRUE FALSE TRUE 0 917 0 NA NA NA 53 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt13 HugoLo_IPRES_2016 7 FALSE FALSE 0.661147884 1.31144544 0.599359426 0.319809154 1.537613766 TRUE 0.661147884 0.544490306 -0.03603238 0.198534763 -0.071585223 1.346097281 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt14.ar.290 RNA-Seq RNA Skin Skin: Neck NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184290 ar-290 NA Pt14 NA HugoLo_IPRES_2016-Pt14 SKCM BRAF Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 0 54 0 NA NA NA 27 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt14 HugoLo_IPRES_2016 7 FALSE FALSE 1.534200728 0.405925702 0.434904113 3.067204929 -0.791619649 FALSE -0.095980013 1.534200728 0.15362622 0.10389786 -0.034750495 -0.254490603 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt15.ar.291 RNA-Seq RNA Lymph Node Lymph Node: Clavicle TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184291 ar-291 NA Pt15 NA HugoLo_IPRES_2016-Pt15 SKCM RAS Skin NA M1b TRUE IV Partial Response TRUE FALSE TRUE 1 980 1 NA NA NA 70 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt15 HugoLo_IPRES_2016 9 FALSE TRUE -0.432862291 0.456296966 0.713164752 -0.754138441 0.230172263 FALSE -0.996180674 -0.432862291 0.002327521 -0.1243422 0.033415743 0.071690543 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt16.ar.292 RNA-Seq RNA Lung Lung TRUE TRUE On Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184292 ar-292 NA Pt16 NA HugoLo_IPRES_2016-Pt16 SKCM BRAF Skin NA M1b TRUE IV Progressive Disease FALSE TRUE FALSE 1 186 1 NA NA NA 19 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt16 HugoLo_IPRES_2016 9 FALSE TRUE -0.373580884 -0.875385 0.315316226 -0.161619885 -0.996073114 FALSE -0.009140069 -0.373580884 0.007861595 -0.001776723 -0.059884729 -0.80182555 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt19.ar.293 RNA-Seq RNA Skin Skin: Chest NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184293 ar-293 NA Pt19 NA HugoLo_IPRES_2016-Pt19 SKCM RAS Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 0 1060 0 NA NA NA 45 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt19 HugoLo_IPRES_2016 9 FALSE FALSE 0.174248282 -1.2680864 0.054490981 -0.733564869 -0.102593566 FALSE 1.517088168 0.174248282 -0.001901548 0.016009461 0.025589678 -0.538017335 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt20.ar.294 RNA-Seq RNA Skin Skin: Clavicle NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184294 ar-294 NA Pt20 NA HugoLo_IPRES_2016-Pt20 SKCM RAS Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 337 1 NA NA NA 63 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt20 HugoLo_IPRES_2016 8 FALSE FALSE 0.786925569 2.917824605 0.837225161 1.361969104 3.439448443 TRUE 0.786925569 -3.432998167 -0.252820023 -0.183978063 -0.08234834 3.226258285 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt22.ar.295 RNA-Seq RNA Skin Skin: Abdomen NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184295 ar-295 NA Pt22 NA HugoLo_IPRES_2016-Pt22 SKCM BRAF Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 182 1 NA NA NA 55 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt22 HugoLo_IPRES_2016 8 FALSE FALSE 1.237409117 1.379064194 0.3929211 0.33173583 1.058414239 TRUE 1.237409117 -0.166033629 -0.188315922 0.21604865 -0.022234119 0.83321355 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt23.ar.296 RNA-Seq RNA Skin Skin: Leg NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184296 ar-296 NA Pt23 NA HugoLo_IPRES_2016-Pt23 SKCM BRAF Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 103 1 NA NA NA 63 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt23 HugoLo_IPRES_2016 8 FALSE FALSE 0.021782461 1.203993757 0.529463821 0.118332645 0.925607768 TRUE 0.021782461 -0.750628895 -0.095595648 0.015504232 -0.039333053 0.844190056 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt25.ar.297 RNA-Seq RNA Abdomen Abdomen: Inguinal TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184297 ar-297 NA Pt25 NA HugoLo_IPRES_2016-Pt25 SKCM TripleWt Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 262 1 NA NA NA 74 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt25 HugoLo_IPRES_2016 9 FALSE FALSE 0.284703482 0.462650896 0.203489979 -0.379190257 1.283859094 TRUE 0.284703482 -0.559446837 -0.013409047 -0.118444417 0.046346618 1.339291581 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt27.ar.298 RNA-Seq RNA Skin Skin: Arm NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184298 ar-298 NA Pt27 NA HugoLo_IPRES_2016-Pt27 SKCM RAS Skin NA M1c TRUE IV Complete Response TRUE FALSE TRUE 0 548 0 NA NA NA 83 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt27 HugoLo_IPRES_2016 9 FALSE TRUE -0.265869129 1.96053461 0.775404801 0.624613562 0.796938844 TRUE -0.265869129 -0.83441166 -0.028650552 -0.039566815 -0.05430995 0.790149601 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt28.ar.300 RNA-Seq RNA Skin Skin: Head NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184300 ar-300 NA Pt28 NA HugoLo_IPRES_2016-Pt28 SKCM NF1 Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 1 439 1 NA NA NA 82 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt28 HugoLo_IPRES_2016 9 FALSE TRUE -0.996023698 -1.61951073 0.928259844 1.488988965 -1.789446577 FALSE 0.426972563 -0.996023698 -0.056489702 -0.109810067 0.012449833 -1.562782955 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt29.ar.301 RNA-Seq RNA Lung Lung TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184301 ar-301 NA Pt29 NA HugoLo_IPRES_2016-Pt29 SKCM TripleWt Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 269 1 NA NA NA 84 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt29 HugoLo_IPRES_2016 10 FALSE TRUE -1.323508941 1.256062094 0.809199985 0.057592005 1.483836608 FALSE -0.222890972 -1.323508941 -0.103895365 -0.109758086 0.021430449 0.847816026 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt31.ar.302 RNA-Seq RNA Intestines Intestines: Sigmoid Colon TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184302 ar-302 NA Pt31 NA HugoLo_IPRES_2016-Pt31 SKCM BRAF Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 0 704 0 NA NA NA 47 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown NA NA NA NA FALSE NA NA NA NA NA NA NA Pt31 HugoLo_IPRES_2016 8 FALSE FALSE 0.74021824 -0.919307167 0.060155468 -0.498341398 -0.694878745 FALSE 1.198368678 0.74021824 0.067022209 0.071416447 -0.026959318 -0.176780944 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt32.ar.303 RNA-Seq RNA Abdomen Abdomen: Abdominal Wall TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184303 ar-303 NA Pt32 NA HugoLo_IPRES_2016-Pt32 SKCM BRAF Skin NA M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 171 1 NA NA NA 47 Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt32 HugoLo_IPRES_2016 7 FALSE FALSE 2.387163057 -0.650884345 0.060607718 -1.250175981 -0.781003634 FALSE 0.242233111 2.387163057 0.115468513 0.233098833 0.021828886 -0.447262353 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt35.ar.304 RNA-Seq RNA Skin Skin: Abdomen NA FALSE Pre NA FALSE NA 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184304 ar-304 NA Pt35 NA HugoLo_IPRES_2016-Pt35 SKCM BRAF Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 0 427 0 NA NA NA 65 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt35 HugoLo_IPRES_2016 6 FALSE FALSE 0.679675796 0.283163788 0.254081264 0.177086826 0.353152294 FALSE -1.230334898 0.679675796 0.120766206 -0.061978948 0.034997829 0.088860505 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt37.ar.305 RNA-Seq RNA Intestines Intestines: Small Bowel TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184305 ar-305 NA Pt37 NA HugoLo_IPRES_2016-Pt37 SKCM BRAF Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 0 364 0 NA NA NA 70 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt37 HugoLo_IPRES_2016 8 FALSE TRUE -0.716900425 -0.752904383 0.568557169 -0.195395779 0.10868036 FALSE -0.352014079 -0.716900425 0.045381559 -0.196873566 0.022587609 0.065845008 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
HugoLo_IPRES_2016.Pt38.ar.306 RNA-Seq RNA Lymph Node Lymph Node: Cervical TRUE FALSE Pre Metastatic Tumor FALSE FALSE 100 NA HiSeq 2000 NA TruSeq RNA Sample Preparation Kit v2; Poly A transcript enrichment: mirVana RNA extraction kit NA NA NA SRR3184306 ar-306 NA Pt38 NA HugoLo_IPRES_2016-Pt38 SKCM TripleWt Skin NA M1c TRUE IV Partial Response TRUE FALSE TRUE 0 448 0 NA NA NA 57 Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK NA TRUE NA NA TRUE NA NA NA NA NA NA NA Pt38 HugoLo_IPRES_2016 10 FALSE FALSE 2.111119774 1.791196042 0.457414136 1.602934053 1.762662988 TRUE 2.111119774 -3.042159561 -0.15307 -0.252033963 -0.055541399 2.21849258 HugoLo_IPRES_2016_Skin 0 0 0 1 0 0 0 0 0 0 0 0 0 ALL
Liu_NatMed_2019.p001.ar.00001 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900001 ar-00001 NA p001 NA Liu_NatMed_2019-p001 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 283 1 1 93 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p001 Liu_NatMed_2019 11 FALSE TRUE -0.493647746 -0.319735651 0.58828619 -0.146692739 -0.375598026 FALSE -1.164894827 -0.493647746 -0.021636788 -0.113530522 0.057169916 -0.842267861 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p004.ar.00012 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900012 ar-00012 NA p004 NA Liu_NatMed_2019-p004 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 1 600 1 1 574 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p004 Liu_NatMed_2019 9 FALSE FALSE 0.729550595 -0.113133096 0.643477899 -1.207376422 -0.75691219 FALSE -0.640002459 0.729550595 0.041919665 0.060576187 0.007591086 -0.872021647 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p006.ar.00567 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900567 ar-00567 NA p006 NA Liu_NatMed_2019-p006 SKCM NA Skin Skin M1b TRUE IV Stable Disease FALSE FALSE TRUE 1 687 1 1 124 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p006 Liu_NatMed_2019 11 FALSE FALSE 0.650269165 -0.362033755 0.506427309 -1.705856941 -0.363437886 FALSE -0.211766795 0.650269165 0.078546172 -0.01347728 0.028582353 -0.520330457 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p007.ar.00597 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900597 ar-00597 NA p007 NA Liu_NatMed_2019-p007 SKCM NA Skin Occult M1c TRUE IV Stable Disease FALSE FALSE TRUE 1 269 1 1 217 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p007 Liu_NatMed_2019 12 FALSE FALSE 0.10539301 -0.224776258 0.363713922 -1.983443943 0.090238021 FALSE -1.040546751 0.10539301 0.096687982 -0.118379343 0.029616316 -0.352991944 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p008.ar.00594 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900594 ar-00594 NA p008 NA Liu_NatMed_2019-p008 SKCM NA Skin Skin M1b TRUE IV Stable Disease FALSE FALSE TRUE 1 1005 1 1 955 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p008 Liu_NatMed_2019 9 FALSE FALSE 0.67559864 -0.823866971 0.394676782 -0.041555325 -0.923655239 FALSE -1.328892623 0.67559864 0.040234585 0.036852876 0.021458157 -0.940706191 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p009.ar.00574 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900574 ar-00574 NA p009 NA Liu_NatMed_2019-p009 SKCM NA Skin Skin M0 FALSE III Progressive Disease FALSE TRUE FALSE 0 963 0 1 21 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p009 Liu_NatMed_2019 11 TRUE FALSE 1.771415674 -1.219482873 0.598298625 -0.827149485 -1.145933091 FALSE -0.745560018 1.771415674 0.118101654 0.085442536 0.075094546 -1.046540681 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p010.ar.42352 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842352 ar-42352 NA p010 NA Liu_NatMed_2019-p010 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 1 1139 1 1 169 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK aCTLA4 TRUE TRUE TRUE TRUE aCTLA4 + aMAPK aCTLA4 TRUE TRUE FALSE TRUE TRUE p010 Liu_NatMed_2019 13 FALSE FALSE 0.917319695 -0.349117672 0.486646106 0.009165686 -0.246586498 FALSE -0.946453384 0.917319695 0.141670556 -0.059216792 0.058646388 0.111216955 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p011.ar.42363 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842363 ar-42363 NA p011 NA Liu_NatMed_2019-p011 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 160 1 1 85 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK + Unnamed aCTLA4 TRUE TRUE TRUE TRUE Unknown None NA FALSE FALSE FALSE FALSE p011 Liu_NatMed_2019 9 FALSE FALSE 0.452536197 -0.162984751 0.308872405 0.097069964 -0.686516714 FALSE -0.394130564 0.452536197 0.113918385 -0.05663981 -0.00496498 -0.408384529 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p013.ar.42373 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842373 ar-42373 NA p013 NA Liu_NatMed_2019-p013 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 58 1 1 44 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p013 Liu_NatMed_2019 10 TRUE FALSE 1.509742617 -1.038600585 0.203262882 -0.444871448 -1.247333683 FALSE -0.948354849 1.509742617 0.193491174 0.013805475 0.01247717 -1.209136546 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p014.ar.00564 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900564 ar-00564 NA p014 NA Liu_NatMed_2019-p014 SKCM NA Skin Acral M1b TRUE IV Progressive Disease FALSE TRUE FALSE 1 186 1 1 76 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE FALSE TRUE FALSE p014 Liu_NatMed_2019 9 FALSE TRUE -0.2323306 0.692451755 0.540184056 0.371220474 0.988968367 TRUE -0.2323306 -0.934792472 -0.06902746 -0.003608534 -0.067879487 0.85687301 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p015.ar.99978 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899978 ar-99978 NA p015 NA Liu_NatMed_2019-p015 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 1 149 1 1 105 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK + Unnamed aCTLA4 TRUE TRUE TRUE TRUE Unknown None NA FALSE FALSE FALSE FALSE p015 Liu_NatMed_2019 12 FALSE TRUE -0.797419718 1.339751627 0.803371749 0.577049372 2.160030531 TRUE -0.593151249 -0.797419718 -0.035069121 -0.095916393 0.004179647 1.628835235 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p017.ar.99992 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899992 ar-99992 NA p017 NA Liu_NatMed_2019-p017 SKCM NA Skin Skin M1c TRUE IV Stable Disease FALSE FALSE TRUE 1 686 1 1 202 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE aMAPK None TRUE FALSE FALSE FALSE TRUE p017 Liu_NatMed_2019 12 FALSE TRUE -0.519583014 0.747100124 0.331101859 0.333093815 0.365567843 FALSE 1.320732301 -0.519583014 -0.015598572 -0.013780522 -0.04154217 -0.003997382 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p018.ar.00020 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900020 ar-00020 NA p018 NA Liu_NatMed_2019-p018 SKCM NA Skin Skin M0 FALSE III Progressive Disease FALSE TRUE FALSE 1 130 1 1 86 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p018 Liu_NatMed_2019 11 FALSE FALSE 0.468763658 0.500632296 0.558947166 0.359528282 -0.625281815 FALSE -1.217566589 0.468763658 0.128698453 -0.039784276 -0.024684911 -0.781686545 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p020.ar.00560 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900560 ar-00560 NA p020 NA Liu_NatMed_2019-p020 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 242 1 1 84 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p020 Liu_NatMed_2019 11 FALSE FALSE 0.034458521 1.227570069 0.611614246 4.608821939 0.712806573 TRUE 1.051184781 0.034458521 0.040399664 0.07545442 -0.1027602 0.997150712 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p021.ar.00021 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900021 ar-00021 NA p021 NA Liu_NatMed_2019-p021 SKCM NA Skin Acral M1c TRUE IV Partial Response TRUE FALSE TRUE 0 906 0 0 906 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p021 Liu_NatMed_2019 10 FALSE FALSE 0.587255466 -1.216525862 0.736916722 0.00938053 -1.423110234 FALSE -1.465154219 0.587255466 0.103263596 -0.06534499 0.036332904 -1.435169444 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p022.ar.00577 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900577 ar-00577 NA p022 NA Liu_NatMed_2019-p022 SKCM NA Skin Acral M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 253 1 1 91 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p022 Liu_NatMed_2019 9 TRUE FALSE 1.412997894 -2.195544313 0.504658825 -2.405333539 -1.896283454 FALSE -1.457170847 1.412997894 0.056974155 0.051785874 0.091722369 -1.846641986 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p023.ar.00568 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900568 ar-00568 NA p023 NA Liu_NatMed_2019-p023 SKCM NA Skin Skin M0 FALSE III Progressive Disease FALSE TRUE FALSE 0 975 0 1 77 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p023 Liu_NatMed_2019 9 TRUE FALSE 2.007201476 -1.765300279 0.248637087 -1.167322708 -1.3059327 FALSE -0.327845512 2.007201476 0.126352643 0.135249922 0.045788714 -0.980342637 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p024.ar.99999 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899999 ar-99999 NA p024 NA Liu_NatMed_2019-p024 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 137 1 1 31 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p024 Liu_NatMed_2019 9 TRUE FALSE 1.944989623 -1.439391187 0.208892572 -1.341830878 -0.837023036 FALSE 0.205990455 1.944989623 0.136061603 0.128227235 0.019565563 -0.980556359 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p025.ar.00546 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900546 ar-00546 NA p025 NA Liu_NatMed_2019-p025 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 1096 0 1 752 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p025 Liu_NatMed_2019 11 FALSE FALSE 0.038771996 -0.36157301 0.533423395 0.012382174 -0.802457132 FALSE 0.139954908 0.038771996 -0.135926004 0.099452757 0.05832812 -0.358832268 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p027.ar.99995 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899995 ar-99995 NA p027 NA Liu_NatMed_2019-p027 SKCM NA Skin Skin M1a TRUE IV Progressive Disease FALSE TRUE FALSE 1 431 1 1 94 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p027 Liu_NatMed_2019 11 FALSE TRUE -0.98258976 0.698637381 0.582270465 -0.644305025 1.408815058 TRUE -0.815408629 -0.98258976 0.044950636 -0.210790963 -0.008409874 0.858267529 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p030.ar.00583 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900583 ar-00583 NA p030 NA Liu_NatMed_2019-p030 SKCM NA Skin Skin M1c TRUE IV Stable Disease FALSE FALSE TRUE 1 213 1 1 133 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK + Unnamed aCTLA4 TRUE TRUE TRUE TRUE Unknown None NA FALSE FALSE FALSE FALSE p030 Liu_NatMed_2019 9 FALSE TRUE -1.871588635 1.995261234 0.660009533 -0.123787126 2.164556433 TRUE 0.101985757 -1.871588635 -0.04418055 -0.183560152 -0.071655084 1.752190358 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p031.ar.00552 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900552 ar-00552 NA p031 NA Liu_NatMed_2019-p031 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 426 1 1 85 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p031 Liu_NatMed_2019 11 FALSE FALSE 0.40699155 -0.673930511 0.52861484 -0.040306441 -1.652315386 FALSE -1.288409096 0.40699155 0.064687165 -0.038619208 0.031906979 -1.574498371 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p032.ar.99993 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899993 ar-99993 NA p032 NA Liu_NatMed_2019-p032 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 53 1 1 49 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK aCTLA4 TRUE TRUE TRUE TRUE Unknown None NA FALSE FALSE FALSE FALSE p032 Liu_NatMed_2019 9 FALSE FALSE 0.67454902 -1.96647526 0.726883389 -0.380479685 -1.472615202 FALSE -1.546850039 0.67454902 0.047800589 0.022149853 0.025963926 -1.487568535 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p033.ar.99975 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899975 ar-99975 NA p033 NA Liu_NatMed_2019-p033 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 1679 0 0 1679 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p033 Liu_NatMed_2019 12 FALSE TRUE -2.349441147 0.51525818 0.610621043 0.39110236 0.911281348 TRUE 1.6497992399999999 -2.349441147 -0.338840251 0.057305616 -0.05091204 1.078992692 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p034.ar.99996 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899996 ar-99996 NA p034 NA Liu_NatMed_2019-p034 SKCM NA Skin Skin M1b TRUE IV Partial Response TRUE FALSE TRUE 0 1691 0 1 240 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p034 Liu_NatMed_2019 10 FALSE FALSE 0.213793013 -2.322798423 0.497962136 -0.163824563 -1.575287587 FALSE 1.118381807 0.213793013 -0.107425519 0.115757455 0.041670552 -1.322965861 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p035.ar.99977 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899977 ar-99977 NA p035 NA Liu_NatMed_2019-p035 SKCM NA Skin Skin M1c TRUE IV Stable Disease FALSE FALSE TRUE 1 968 1 1 181 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE aCTLA4 + Combined ICI aCTLA4 + Combined ICI TRUE TRUE TRUE TRUE FALSE p035 Liu_NatMed_2019 11 FALSE TRUE -0.615199825 -0.059048121 0.663026976 0.078452279 0.445353965 FALSE 0.192443159 -0.615199825 -0.05592546 -0.033229485 -0.002201601 -0.167507327 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p036.ar.00003 RNA-Seq RNA Lung Lung TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900003 ar-00003 NA p036 NA Liu_NatMed_2019-p036 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 451 1 1 63 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE FALSE TRUE FALSE p036 Liu_NatMed_2019 10 FALSE FALSE 0.161363145 -1.053630063 0.494943615 -1.871338751 -1.022019924 FALSE -0.974251085 0.161363145 -0.032901268 -0.002881049 0.064211742 -0.702220164 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p037.ar.00557 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900557 ar-00557 NA p037 NA Liu_NatMed_2019-p037 SKCM NA Skin Mucosal M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 275 1 1 77 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p037 Liu_NatMed_2019 9 FALSE FALSE 1.515447489 0.77817902 0.373351556 3.993937066 1.514466892 TRUE 1.515447489 0.124386373 -0.094559076 0.171036427 -0.037890595 1.085309396 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p038.ar.00590 RNA-Seq RNA Intestines Intestines: Colon TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900590 ar-00590 NA p038 NA Liu_NatMed_2019-p038 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 343 1 1 98 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK aCTLA4 TRUE TRUE TRUE TRUE aMAPK None TRUE FALSE FALSE FALSE TRUE p038 Liu_NatMed_2019 9 FALSE FALSE 0.873642558 -0.568345103 0.658354777 -0.503699702 -0.152997645 FALSE -1.45474049 0.873642558 0.046901638 0.030808082 0.053904873 -0.333488593 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p040.ar.00595 RNA-Seq RNA Liver Liver TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900595 ar-00595 NA p040 NA Liu_NatMed_2019-p040 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 468 1 1 63 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unnamed None TRUE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p040 Liu_NatMed_2019 8 FALSE FALSE 1.04333707 -0.613878897 0.662974448 -0.814790958 0.240166953 FALSE -1.763761692 1.04333707 0.133675742 -0.024073704 0.046007106 0.191553254 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p042.ar.99979 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899979 ar-99979 NA p042 NA Liu_NatMed_2019-p042 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 1027 0 0 1027 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p042 Liu_NatMed_2019 13 FALSE FALSE 0.762605211 0.406501851 0.273760089 -0.827673164 -0.68177321 FALSE -0.791768634 0.762605211 0.144643464 -0.043395959 -0.00284648 -0.453938101 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p044.ar.00579 RNA-Seq RNA Soft Tissue Soft Tissue TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900579 ar-00579 NA p044 NA Liu_NatMed_2019-p044 SKCM NA Skin Mucosal M1c TRUE IV Partial Response TRUE FALSE TRUE 0 922 0 0 922 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p044 Liu_NatMed_2019 12 FALSE TRUE -1.433259914 1.887195488 0.122468207 -2.452969874 0.231479394 FALSE 1.412861705 -1.433259914 -0.09459754 -0.08059575 -0.035418084 1.206037573 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p045.ar.00548 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900548 ar-00548 NA p045 NA Liu_NatMed_2019-p045 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 1666 0 0 1666 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p045 Liu_NatMed_2019 11 FALSE TRUE -0.400014 0.690756722 0.391480658 -0.50491459 1.503117637 TRUE 0.896493797 -0.400014 -0.030476624 0.032407955 -0.061840042 1.082674996 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p047.ar.00006 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900006 ar-00006 NA p047 NA Liu_NatMed_2019-p047 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 0 937 0 1 74 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE FALSE TRUE FALSE p047 Liu_NatMed_2019 10 TRUE FALSE 1.158715603 -1.578424319 0.240885796 -1.178202826 -1.150266207 FALSE -1.19195254 1.158715603 0.125500214 -0.023952076 0.068174912 -1.333327873 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p048.ar.00578 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900578 ar-00578 NA p048 NA Liu_NatMed_2019-p048 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 53 1 1 50 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unnamed None TRUE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p048 Liu_NatMed_2019 10 FALSE TRUE -0.502655156 -0.537051178 0.859654495 -0.638453528 0.255461226 FALSE -1.135940713 -0.502655156 0.047835844 -0.173230675 0.043407821 -0.167538139 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p051.ar.00576 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900576 ar-00576 NA p051 NA Liu_NatMed_2019-p051 SKCM NA Skin Skin M1b TRUE IV Partial Response TRUE FALSE TRUE 0 1547 0 1 471 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p051 Liu_NatMed_2019 10 FALSE TRUE -0.128607316 2.358553922 0.58383677 1.086797204 -0.069347919 FALSE 0.748326366 -0.128607316 -0.079223331 0.127283301 -0.058777799 0.595182847 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p056.ar.00019 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900019 ar-00019 NA p056 NA Liu_NatMed_2019-p056 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 122 1 1 71 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE aMAPK None TRUE FALSE FALSE FALSE TRUE p056 Liu_NatMed_2019 11 FALSE TRUE -0.018356263 -0.167445013 0.661072606 0.337920702 -0.322774694 FALSE 1.288802434 -0.018356263 -0.097314233 0.08519593 0.023017161 -0.041449697 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p058.ar.99997 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899997 ar-99997 NA p058 NA Liu_NatMed_2019-p058 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 303 1 1 77 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p058 Liu_NatMed_2019 9 TRUE FALSE 1.781752136 -1.306945883 0.485629234 0.19974368 -1.819507093 FALSE -0.344358379 1.781752136 0.122910231 0.07861965 0.068893045 -0.90777364 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p061.ar.00593 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900593 ar-00593 NA p061 NA Liu_NatMed_2019-p061 SKCM NA Skin Skin M1c TRUE IV Stable Disease FALSE FALSE TRUE 0 987 0 0 987 0 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p061 Liu_NatMed_2019 9 FALSE TRUE -1.813099922 1.309223359 0.580344359 3.747686137 0.523722737 FALSE 0.406822724 -1.813099922 -0.13204712 -0.096710672 -0.048844071 0.6231037 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p062.ar.99983 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899983 ar-99983 NA p062 NA Liu_NatMed_2019-p062 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 1001 0 0 1001 0 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p062 Liu_NatMed_2019 11 FALSE FALSE 1.685380666 0.443181496 0.237758153 2.212934366 -0.617646862 FALSE 0.844092247 1.685380666 0.084864994 0.205285381 -0.021804368 -0.483727043 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p063.ar.99998 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899998 ar-99998 NA p063 NA Liu_NatMed_2019-p063 SKCM NA Skin Mucosal M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 178 1 1 89 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p063 Liu_NatMed_2019 11 FALSE TRUE -0.028431125 0.443783695 0.813371581 -0.465301404 0.43579038 FALSE -1.443440908 -0.028431125 0.079060382 -0.137392291 0.030138802 0.154274844 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p067.ar.00563 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900563 ar-00563 NA p067 NA Liu_NatMed_2019-p067 SKCM NA Skin Mucosal M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 136 1 1 94 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p067 Liu_NatMed_2019 9 FALSE FALSE 0.851541477 -1.551932151 0.597800503 -1.953274086 -0.259962159 FALSE -1.6404968 0.851541477 0.08122077 -0.065179594 0.10104307 -0.44481405 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p072.ar.99991 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899991 ar-99991 NA p072 NA Liu_NatMed_2019-p072 SKCM NA Skin Skin M1a TRUE IV Progressive Disease FALSE TRUE FALSE 0 395 0 1 67 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE aMAPK None TRUE FALSE FALSE FALSE TRUE p072 Liu_NatMed_2019 8 FALSE TRUE -0.022394349 -0.26289715 0.693371203 0.040603819 0.450932825 TRUE -0.319690379 -0.022394349 -0.019608558 0.034809218 -0.017940532 0.566197589 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p073.ar.99994 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899994 ar-99994 NA p073 NA Liu_NatMed_2019-p073 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 846 1 1 85 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p073 Liu_NatMed_2019 10 FALSE FALSE 1.407683214 -0.432540401 0.586155345 -1.215800395 -0.906847966 FALSE -1.495197724 1.407683214 0.170669336 -0.016529056 0.049633511 -1.123046126 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p075.ar.00562 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900562 ar-00562 NA p075 NA Liu_NatMed_2019-p075 SKCM NA Skin Occult M1c TRUE IV Partial Response TRUE FALSE TRUE 0 891 0 1 891 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p075 Liu_NatMed_2019 11 FALSE FALSE 1.443323158 2.332354036 0.428544052 1.3193898 2.270143031 TRUE 1.443323158 -1.175755593 -0.007766337 -0.113536331 -0.065572579 2.222741132 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p077.ar.99985 RNA-Seq RNA Lung Lung TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899985 ar-99985 NA p077 NA Liu_NatMed_2019-p077 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 444 1 1 95 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE FALSE TRUE p077 Liu_NatMed_2019 12 FALSE FALSE 0.070623385 1.283999187 0.739435885 1.108829397 1.825297199 TRUE 0.070623385 -1.078091699 -0.070862726 -0.034320931 -0.056963304 1.254581625 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p078.ar.00575 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900575 ar-00575 NA p078 NA Liu_NatMed_2019-p078 SKCM NA Skin Skin M1b TRUE IV Progressive Disease FALSE TRUE FALSE 1 356 1 1 86 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE TRUE aMAPK None TRUE FALSE FALSE FALSE TRUE p078 Liu_NatMed_2019 10 FALSE FALSE 1.648188662 1.19025566 0.223277239 0.655984654 0.314689762 FALSE 1.597958697 1.648188662 0.117742982 0.218841787 -0.079009051 0.431667667 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p079.ar.00573 RNA-Seq RNA Brain Brain TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900573 ar-00573 NA p079 NA Liu_NatMed_2019-p079 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 0 849 0 1 84 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE TRUE Unknown None NA FALSE FALSE FALSE FALSE p079 Liu_NatMed_2019 12 FALSE FALSE 1.466192856 1.205802526 0.426990991 1.334124436 1.58598273 TRUE 1.466192856 -1.194601565 -0.170098421 0.079690907 -0.070283166 1.120384313 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p082.ar.99980 RNA-Seq RNA Brain Brain TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899980 ar-99980 NA p082 NA Liu_NatMed_2019-p082 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 131 1 1 89 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK + Unnamed aCTLA4 TRUE TRUE TRUE TRUE aCTLA4 + aMAPK aCTLA4 TRUE TRUE FALSE TRUE TRUE p082 Liu_NatMed_2019 9 TRUE FALSE 1.110615316 -1.940436509 0.721443494 -0.341457794 -1.589280596 FALSE -1.929756945 1.110615316 0.134542325 0.01040763 0.006467545 -1.870750964 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p083.ar.99984 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899984 ar-99984 NA p083 NA Liu_NatMed_2019-p083 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 71 1 1 71 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p083 Liu_NatMed_2019 7 TRUE FALSE 1.640362348 -2.021113022 0.413910101 -1.055586983 -1.802585089 FALSE -1.471024463 1.640362348 0.154241872 -0.016181461 0.095786752 -1.781438071 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p086.ar.00571 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900571 ar-00571 NA p086 NA Liu_NatMed_2019-p086 SKCM NA Skin Skin M1c TRUE IV Stable Disease FALSE FALSE TRUE 0 1327 0 1 1327 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p086 Liu_NatMed_2019 11 FALSE TRUE -2.496175461 2.43209092 0.422966203 1.225805043 3.037301409 TRUE 2.509988716 -2.496175461 -0.245875664 0.003188857 -0.115760531 2.213689355 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p087.ar.00596 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900596 ar-00596 NA p087 NA Liu_NatMed_2019-p087 SKCM NA Skin Occult M1c TRUE IV Partial Response TRUE FALSE TRUE 0 1263 0 1 1142 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p087 Liu_NatMed_2019 13 FALSE TRUE -1.995838148 0.75971172 0.455546554 0.626696265 1.040494019 TRUE 0.70711452 -1.995838148 -0.073774065 -0.231422308 0.001987518 1.275159753 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p094.ar.00586 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900586 ar-00586 NA p094 NA Liu_NatMed_2019-p094 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 40 1 1 40 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK aCTLA4 TRUE TRUE TRUE TRUE Unknown None NA FALSE FALSE FALSE FALSE p094 Liu_NatMed_2019 11 FALSE TRUE -0.453019926 1.36348729 0.607152298 1.800567752 0.4450813 TRUE -0.280979578 -0.453019926 0.051763217 -0.106521241 -0.023684424 1.161026328 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p096.ar.00550 RNA-Seq RNA Endocrine Endocrine: Pancreas TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900550 ar-00550 NA p096 NA Liu_NatMed_2019-p096 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 913 0 0 913 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p096 Liu_NatMed_2019 8 FALSE TRUE -0.406766417 -1.358093676 0.333127325 -0.531354245 -1.229865578 FALSE 0.067356453 -0.406766417 -0.026402223 -0.047404049 0.015203919 -0.910380469 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p098.ar.00584 RNA-Seq RNA Lung Lung TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900584 ar-00584 NA p098 NA Liu_NatMed_2019-p098 SKCM NA Skin Occult M1b TRUE IV Progressive Disease FALSE TRUE FALSE 1 683 1 1 73 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p098 Liu_NatMed_2019 11 FALSE FALSE 0.598013131 2.764884887 0.436640738 0.792612263 1.635151501 TRUE 0.598013131 -2.185250997 -0.109556972 -0.105138702 -0.110517837 1.580412491 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p099.ar.00566 RNA-Seq RNA Soft Tissue Soft Tissue TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900566 ar-00566 NA p099 NA Liu_NatMed_2019-p099 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 921 0 1 319 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p099 Liu_NatMed_2019 12 FALSE TRUE -1.289254648 0.258027059 0.363764431 1.570912135 0.008785406 FALSE 0.722985837 -1.289254648 -0.158776731 0.033633457 -0.069212867 0.132008076 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p100.ar.42349 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842349 ar-42349 NA p100 NA Liu_NatMed_2019-p100 SKCM NA Skin Occult M1c TRUE IV Partial Response TRUE FALSE TRUE 1 938 1 0 922 0 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p100 Liu_NatMed_2019 12 FALSE TRUE -2.434182003 2.694415852 0.392269477 2.837635615 3.721168535 TRUE 3.059810926 -2.434182003 -0.225953297 0.011442303 -0.137453206 4.109640677 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p102.ar.42356 RNA-Seq RNA Brain Brain TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842356 ar-42356 NA p102 NA Liu_NatMed_2019-p102 SKCM NA Skin Acral M1c TRUE IV Stable Disease FALSE FALSE TRUE 0 785 0 1 176 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p102 Liu_NatMed_2019 9 FALSE FALSE 0.342616047 -1.381380718 0.503336889 -0.647650397 -0.724848624 FALSE 0.276013841 0.342616047 0.055183001 0.00161667 -0.018726251 -0.703935036 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p105.ar.42347 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842347 ar-42347 NA p105 NA Liu_NatMed_2019-p105 SKCM NA Skin Skin M1c TRUE IV Stable Disease FALSE FALSE TRUE 1 521 1 0 378 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p105 Liu_NatMed_2019 7 FALSE TRUE -0.269838163 -0.739055254 0.497603356 -1.158345156 0.764512769 FALSE -1.493855689 -0.269838163 0.066502462 -0.154122656 0.036731094 0.060081949 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p106.ar.41996 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10841996 ar-41996 NA p106 NA Liu_NatMed_2019-p106 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 780 0 0 780 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE TRUE Unknown None NA FALSE FALSE FALSE FALSE p106 Liu_NatMed_2019 12 FALSE TRUE -0.573704092 1.047006093 0.581932253 1.366506479 0.446224618 FALSE -0.661680884 -0.573704092 -0.030701042 -0.046352871 -0.013556877 0.61998733 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p107.ar.42358 RNA-Seq RNA Endocrine Endocrine: Adrenal Gland TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842358 ar-42358 NA p107 NA Liu_NatMed_2019-p107 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 1 47 1 1 47 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p107 Liu_NatMed_2019 2 FALSE FALSE 0.845129959 -2.583624117 0.073996606 -1.953274086 -1.359441349 FALSE -0.332746514 0.845129959 0.094755863 -0.00910686 0.042674089 -1.137898228 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p108.ar.42068 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842068 ar-42068 NA p108 NA Liu_NatMed_2019-p108 SKCM NA Skin Acral M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 165 1 1 77 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p108 Liu_NatMed_2019 9 FALSE TRUE -0.63205254 -0.387703485 0.202682613 -1.953274086 -1.243947568 FALSE -1.117389118 -0.63205254 -0.025104539 -0.051431115 -0.026921047 -0.760620049 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p112.ar.41921 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10841921 ar-41921 NA p112 NA Liu_NatMed_2019-p112 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 521 1 1 91 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE FALSE TRUE FALSE p112 Liu_NatMed_2019 10 FALSE TRUE -0.109949245 1.164043 0.619928043 1.183952655 0.748822671 FALSE 1.242589416 -0.109949245 0.011929878 0.031370994 -0.053235987 0.767781273 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p116.ar.42360 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842360 ar-42360 NA p116 NA Liu_NatMed_2019-p116 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 118 1 1 64 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unnamed None TRUE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p116 Liu_NatMed_2019 11 FALSE FALSE 1.048715348 -0.47343258 0.186773946 0.642775773 -1.107659294 FALSE -0.421522536 1.048715348 0.062968384 0.052920579 0.044153494 -0.855820629 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p117.ar.42367 RNA-Seq RNA Soft Tissue Soft Tissue TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842367 ar-42367 NA p117 NA Liu_NatMed_2019-p117 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 295 1 1 100 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + Unnamed aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p117 Liu_NatMed_2019 9 FALSE TRUE -0.280906191 -0.26814628 0.356818053 -0.061052204 -0.201278021 FALSE 1.457528753 -0.280906191 -0.227317339 0.239025402 -0.023504507 -0.204511661 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p121.ar.42364 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842364 ar-42364 NA p121 NA Liu_NatMed_2019-p121 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 1306 0 1 1228 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p121 Liu_NatMed_2019 10 FALSE TRUE -0.420145516 0.801931092 0.649515488 0.282812309 1.070761487 TRUE 0.818711646 -0.420145516 -0.038865987 0.004057671 -0.025068624 1.129048343 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p125.ar.42377 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842377 ar-42377 NA p125 NA Liu_NatMed_2019-p125 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 978 0 0 978 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE TRUE Unknown None NA FALSE FALSE FALSE FALSE p125 Liu_NatMed_2019 14 FALSE FALSE 2.87513974 3.025731489 0.555377601 2.493117138 5.254725814 TRUE 2.87513974 -4.101779711 -0.264711652 -0.242396049 -0.102721486 4.573104432 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p126.ar.42369 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842369 ar-42369 NA p126 NA Liu_NatMed_2019-p126 SKCM NA Skin Occult M1c TRUE IV Partial Response TRUE FALSE TRUE 0 992 0 1 742 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p126 Liu_NatMed_2019 13 FALSE FALSE 0.607816345 2.040860528 0.51664305 1.515331547 1.484466056 TRUE 0.607816345 -0.966983748 -0.081840394 0.00750276 -0.060811717 1.241883751 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p127.ar.42378 RNA-Seq RNA Stomach Stomach TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842378 ar-42378 NA p127 NA Liu_NatMed_2019-p127 SKCM NA Skin Occult M1c TRUE IV Complete Response TRUE FALSE TRUE 0 866 0 0 866 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p127 Liu_NatMed_2019 10 FALSE TRUE -0.164555245 -0.85078335 0.542174664 0.245571946 -0.663872422 FALSE 1.083605563 -0.164555245 0.041680184 -0.054115788 -0.019294423 -0.266693632 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p130.ar.42380 RNA-Seq RNA Brain Brain TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842380 ar-42380 NA p130 NA Liu_NatMed_2019-p130 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 192 1 1 124 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p130 Liu_NatMed_2019 11 FALSE FALSE 0.412234729 1.626964753 0.772916794 0.469410678 1.483963523 TRUE 0.412234729 -1.593537021 -0.07812114 -0.106655432 -0.056454612 1.431337895 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p131.ar.42368 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842368 ar-42368 NA p131 NA Liu_NatMed_2019-p131 SKCM NA Skin Skin M1b TRUE IV Partial Response TRUE FALSE TRUE 0 833 0 0 833 0 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p131 Liu_NatMed_2019 7 FALSE TRUE -1.115012707 -1.305709429 0.226750302 0.124520442 -1.905105606 FALSE -0.691826481 -1.115012707 -0.102549982 -0.068452343 -0.004502371 -1.633339449 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p132.ar.42376 RNA-Seq RNA Lung Lung TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842376 ar-42376 NA p132 NA Liu_NatMed_2019-p132 SKCM NA Skin Skin M1b TRUE IV Complete Response TRUE FALSE TRUE 0 739 0 1 389 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p132 Liu_NatMed_2019 11 FALSE FALSE 1.956063935 1.456765705 0.539530297 -0.703626607 1.215323374 TRUE 1.956063935 -1.738501797 -0.147507617 -0.081676525 -0.04095731 1.201330587 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p133.ar.42379 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842379 ar-42379 NA p133 NA Liu_NatMed_2019-p133 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 370 1 1 63 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE FALSE TRUE FALSE p133 Liu_NatMed_2019 13 FALSE TRUE -0.245442118 1.182595554 0.575896706 1.315085081 0.452604737 TRUE -0.245442118 -1.23332451 -0.076608602 -0.037009065 -0.065945866 0.629042422 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p134.ar.42365 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842365 ar-42365 NA p134 NA Liu_NatMed_2019-p134 SKCM NA Skin Skin M1b TRUE IV Progressive Disease FALSE TRUE FALSE 1 590 1 1 63 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE FALSE TRUE FALSE p134 Liu_NatMed_2019 12 FALSE FALSE 0.765144516 1.18559995 0.690134976 0.978685051 1.209154071 TRUE 0.765144516 -0.700337813 -0.069836912 -0.007042528 -0.026264678 0.943938088 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p135.ar.42371 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842371 ar-42371 NA p135 NA Liu_NatMed_2019-p135 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 628 0 0 628 0 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p135 Liu_NatMed_2019 10 FALSE FALSE 0.482485652 0.067928215 0.85099637400000006 -0.184453535 -0.110460101 FALSE -1.187935412 0.482485652 0.027611003 0.011312939 0.018823398 -0.335576585 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p137.ar.42366 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842366 ar-42366 NA p137 NA Liu_NatMed_2019-p137 SKCM NA Skin Occult M1c TRUE IV Complete Response TRUE FALSE TRUE 0 772 0 0 772 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p137 Liu_NatMed_2019 12 FALSE FALSE 2.310955194 2.643794711 0.517436554 1.897168693 2.615173973 TRUE 2.310955194 -2.297502397 -0.132718185 -0.088956319 -0.117958974 2.512537021 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p140.ar.42381 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842381 ar-42381 NA p140 NA Liu_NatMed_2019-p140 SKCM NA Skin Skin M1b TRUE IV Progressive Disease FALSE TRUE FALSE 1 351 1 1 67 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE FALSE TRUE FALSE p140 Liu_NatMed_2019 8 FALSE FALSE 0.302938101 -1.054736299 0.616270558 -0.664612645 -1.020706041 FALSE -1.32463885 0.302938101 0.095921867 -0.081136341 0.014515058 -1.219157219 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p141.ar.42375 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10842375 ar-42375 NA p141 NA Liu_NatMed_2019-p141 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 875 0 0 875 0 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p141 Liu_NatMed_2019 8 TRUE FALSE 1.262834006 -1.80317239 0.688597816 -0.828377311 -1.920120428 FALSE -1.11318079 1.262834006 0.092837466 0.127994737 -0.020671945 -1.86810969 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p142.ar.99955 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899955 ar-99955 NA p142 NA Liu_NatMed_2019-p142 SKCM NA Skin Skin M1a TRUE IV Stable Disease FALSE FALSE TRUE 0 996 0 0 996 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p142 Liu_NatMed_2019 12 FALSE TRUE -0.824385858 -0.803304038 0.427120689 -0.364769184 -0.091535005 FALSE 0.108550299 -0.824385858 -0.064215842 -0.038660851 -0.022812009 -0.111073526 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p143.ar.00559 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900559 ar-00559 NA p143 NA Liu_NatMed_2019-p143 SKCM NA Skin Skin M0 FALSE III Progressive Disease FALSE TRUE FALSE 0 630 0 1 153 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p143 Liu_NatMed_2019 10 FALSE FALSE 0.050076248 0.597603355 0.416191585 -0.17452497 -0.2565019 FALSE 1.456962836 0.050076248 -0.099639595 0.133442464 -0.003171907 0.383718415 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p144.ar.00018 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900018 ar-00018 NA p144 NA Liu_NatMed_2019-p144 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 662 0 0 662 0 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p144 Liu_NatMed_2019 8 FALSE FALSE 0.791414085 -1.481388389 0.537208236 -1.953274086 -0.606653347 FALSE -1.140730376 0.791414085 0.003398259 0.071890131 0.040431821 -0.695252939 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p145.ar.99986 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899986 ar-99986 NA p145 NA Liu_NatMed_2019-p145 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 833 0 0 833 0 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p145 Liu_NatMed_2019 13 FALSE TRUE -0.226129546 0.161263367 0.322197802 -0.149828809 1.241365028 FALSE 0.014846568 -0.226129546 -0.105122715 0.069115499 0.008097182 0.7236183 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p146.ar.00580 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900580 ar-00580 NA p146 NA Liu_NatMed_2019-p146 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 612 0 0 612 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p146 Liu_NatMed_2019 10 FALSE FALSE 1.496377166 -0.432083456 0.431717862 0.397092432 -0.490279867 FALSE -0.515554488 1.496377166 0.098956427 0.088923133 0.031490422 -0.441922442 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p147.ar.00553 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900553 ar-00553 NA p147 NA Liu_NatMed_2019-p147 SKCM NA Skin Occult M1c TRUE IV Complete Response TRUE FALSE TRUE 0 960 0 0 960 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p147 Liu_NatMed_2019 11 FALSE FALSE 1.283184085 -0.680370381 0.553593284 -1.734697563 -1.387311617 FALSE -1.685407237 1.283184085 0.146205952 0.005622606 0.04306922 -1.313441197 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p148.ar.00014 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900014 ar-00014 NA p148 NA Liu_NatMed_2019-p148 SKCM NA Skin Skin M1a TRUE IV Partial Response TRUE FALSE TRUE 0 792 0 0 792 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p148 Liu_NatMed_2019 10 FALSE TRUE -1.11578675 -0.879486099 0.715682513 -0.188825775 -0.652205791 FALSE -1.169696683 -1.11578675 -0.138348757 -0.085974486 0.056657351 -0.798496574 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p149.ar.99973 RNA-Seq RNA Lung Lung TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899973 ar-99973 NA p149 NA Liu_NatMed_2019-p149 SKCM NA Skin Skin M1c TRUE IV Stable Disease FALSE FALSE TRUE 1 497 1 1 210 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE FALSE TRUE FALSE p149 Liu_NatMed_2019 11 FALSE FALSE 1.830178053 1.633982305 0.507779349 2.580669849 1.602117371 TRUE 1.830178053 -1.315053165 -0.136057977 0.017748441 -0.066800562 1.406882938 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p150.ar.00558 RNA-Seq RNA Liver Liver TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900558 ar-00558 NA p150 NA Liu_NatMed_2019-p150 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 685 0 0 685 0 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p150 Liu_NatMed_2019 10 FALSE FALSE 0.373698948 -0.586532011 0.490140592 -0.321105362 -0.510897756 FALSE -0.532103603 0.373698948 0.004442997 -0.009524932 0.067781349 -0.561832856 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p154.ar.00010 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900010 ar-00010 NA p154 NA Liu_NatMed_2019-p154 SKCM NA Skin Skin M0 FALSE III Stable Disease FALSE FALSE TRUE 0 635 0 1 251 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p154 Liu_NatMed_2019 9 TRUE FALSE 1.123872783 -1.564757146 0.547491879 -0.839013355 -1.48610943 FALSE 0.495696917 1.123872783 -0.06885481 0.202790052 0.058421607 -1.465475413 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p155.ar.99989 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899989 ar-99989 NA p155 NA Liu_NatMed_2019-p155 SKCM NA Skin Skin M0 FALSE III Progressive Disease FALSE TRUE FALSE 0 475 0 1 113 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE FALSE TRUE p155 Liu_NatMed_2019 6 FALSE FALSE 0.65824236 0.011436058 0.685875729 -0.695018326 -0.810930139 FALSE 0.519946694 0.65824236 0.050869108 0.033018957 0.007997113 -0.577203776 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p156.ar.99967 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899967 ar-99967 NA p156 NA Liu_NatMed_2019-p156 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 87 1 1 80 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p156 Liu_NatMed_2019 10 TRUE FALSE 1.121556313 -1.626432229 0.630564582 -1.060583597 -1.706397127 FALSE 0.122467093 1.121556313 -0.040009634 0.189109511 0.026155224 -1.471774956 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p158.ar.00561 RNA-Seq RNA Endocrine Endocrine: Adrenal Gland TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900561 ar-00561 NA p158 NA Liu_NatMed_2019-p158 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 194 0 1 162 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE TRUE Unknown None NA FALSE FALSE FALSE FALSE p158 Liu_NatMed_2019 10 FALSE FALSE 0.752558563 0.561184667 0.435040948 0.330418247 0.007854124 FALSE -0.427460917 0.752558563 0.131644092 -0.068013998 0.042085509 0.929530755 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p159.ar.00565 RNA-Seq RNA Maxillary Sinus Hard Palate Maxillary Sinus Hard Palate TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900565 ar-00565 NA p159 NA Liu_NatMed_2019-p159 SKCM NA Skin Mucosal M1c TRUE IV Stable Disease FALSE FALSE TRUE 0 288 0 1 216 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p159 Liu_NatMed_2019 11 FALSE FALSE 0.236105724 -0.225537036 0.222026896 -1.510950102 -0.33854297 FALSE -0.104956195 0.236105724 0.042402908 -0.006509372 0.00148122 0.006646988 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p162.ar.00555 RNA-Seq RNA Intestines Intestines TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900555 ar-00555 NA p162 NA Liu_NatMed_2019-p162 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 201 1 1 53 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p162 Liu_NatMed_2019 10 FALSE TRUE -1.119763367 0.740199705 0.550490063 2.17865434 0.507520118 FALSE -0.674504518 -1.119763367 -0.041399791 -0.079895161 -0.048233999 0.119832549 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p163.ar.99974 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899974 ar-99974 NA p163 NA Liu_NatMed_2019-p163 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 173 1 1 48 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK + Unnamed aCTLA4 TRUE TRUE TRUE TRUE aMAPK + Combined ICI Combined ICI TRUE TRUE TRUE TRUE TRUE p163 Liu_NatMed_2019 9 FALSE FALSE 1.194001041 -0.775163738 0.202794791 -0.578802013 -0.43591093400000003 FALSE -0.177117904 1.194001041 0.113754017 -0.005296819 0.062924697 -0.401047224 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p165.ar.00569 RNA-Seq RNA Soft Tissue Soft Tissue TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900569 ar-00569 NA p165 NA Liu_NatMed_2019-p165 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 0 75 0 1 13 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p165 Liu_NatMed_2019 11 FALSE FALSE 0.635876813 -0.242748607 0.372273274 -0.009717587 -0.518142765 FALSE -1.326858479 0.635876813 0.062978438 0.01002599 0.011362783 -0.220780558 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p166.ar.00581 RNA-Seq RNA Soft Tissue Soft Tissue TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900581 ar-00581 NA p166 NA Liu_NatMed_2019-p166 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 1 205 1 0 205 0 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p166 Liu_NatMed_2019 8 TRUE FALSE 1.610560225 -1.689387766 0.356673924 -1.376215768 -1.709894444 FALSE -1.724245295 1.610560225 0.159410482 0.055334405 0.027603006 -1.806707188 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p167.ar.00582 RNA-Seq RNA Brain Brain TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900582 ar-00582 NA p167 NA Liu_NatMed_2019-p167 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 282 1 1 57 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p167 Liu_NatMed_2019 10 FALSE FALSE 0.953448631 0.46002491 0.468985964 0.758588363 0.883290027 TRUE 0.953448631 -1.410334213 -0.089436531 -0.093616031 -0.032462821 1.148814393 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p168.ar.00000 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900000 ar-00000 NA p168 NA Liu_NatMed_2019-p168 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 623 0 0 580 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE TRUE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p168 Liu_NatMed_2019 8 TRUE FALSE 1.00388466 -1.474459425 0.150431766 -1.784939797 -1.256910688 FALSE -0.892748408 1.00388466 0.104666401 -0.003173395 0.041866164 -0.95126506 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p169.ar.00572 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900572 ar-00572 NA p169 NA Liu_NatMed_2019-p169 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 543 0 0 543 0 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p169 Liu_NatMed_2019 12 FALSE TRUE -0.291229649 1.010440121 0.826592552 1.052955745 1.075310937 TRUE -0.291229649 -0.595499365 -0.01978119 -0.137629263 0.055021007 0.854889598 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p170.ar.00549 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2000 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900549 ar-00549 NA p170 NA Liu_NatMed_2019-p170 SKCM NA Skin Skin M0 FALSE III Stable Disease FALSE FALSE TRUE 0 347 0 0 347 0 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p170 Liu_NatMed_2019 9 FALSE FALSE 0.498809421 0.460275532 0.412755569 -0.13457741 -0.289566554 FALSE 0.382857737 0.498809421 0.018623388 0.087470298 -0.029717453 -0.158804397 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p172.ar.99987 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899987 ar-99987 NA p172 NA Liu_NatMed_2019-p172 SKCM NA Skin Skin M0 FALSE III Stable Disease FALSE FALSE TRUE 0 272 0 1 272 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p172 Liu_NatMed_2019 11 FALSE TRUE -0.722061282 0.979293314 0.680260569 -0.183879811 1.101026355 FALSE 1.734051578 -0.722061282 -0.170005596 0.029565362 0.04472319 1.03956739 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p173.ar.00015 RNA-Seq RNA Lung Lung TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900015 ar-00015 NA p173 NA Liu_NatMed_2019-p173 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 42 1 1 16 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p173 Liu_NatMed_2019 10 FALSE FALSE 0.251047095 -0.896820318 0.467150515 -0.337155414 -1.233049296 FALSE -1.024571597 0.251047095 0.04669311 -0.01376296 -0.006691904 -1.193861166 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p179.ar.00570 RNA-Seq RNA Lymph Node Lymph Node TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900570 ar-00570 NA p179 NA Liu_NatMed_2019-p179 SKCM NA Skin Skin M1b TRUE IV Partial Response TRUE FALSE TRUE 0 653 0 1 336 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p179 Liu_NatMed_2019 6 FALSE FALSE 0.264671547 -2.137713538 0.699139311 -0.068047814 -1.920120428 FALSE -1.722995967 0.264671547 0.134625228 -0.161446558 0.054804051 -1.916001119 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p181.ar.99981 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899981 ar-99981 NA p181 NA Liu_NatMed_2019-p181 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 476 0 0 476 0 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p181 Liu_NatMed_2019 12 FALSE FALSE 0.914819983 1.49403509 0.663252106 1.875798148 1.113866648 TRUE 0.914819983 -0.494509615 -0.067169232 0.046857291 -0.044139905 1.464282312 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p183.ar.00011 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900011 ar-00011 NA p183 NA Liu_NatMed_2019-p183 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 572 1 1 84 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unnamed None TRUE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p183 Liu_NatMed_2019 10 FALSE FALSE 0.106589334 1.349290746 0.699963204 -1.953274086 3.139887114 TRUE 0.106589334 -0.865165002 -0.09709018 -0.054217208 0.014272703 1.949923485 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p184.ar.00547 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900547 ar-00547 NA p184 NA Liu_NatMed_2019-p184 SKCM NA Skin Skin M1c TRUE IV Complete Response TRUE FALSE TRUE 0 513 0 0 372 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p184 Liu_NatMed_2019 10 FALSE FALSE 0.387466012 -0.298349412 0.356268859 -1.953274086 -1.125257256 FALSE 0.642830635 0.387466012 -0.006504541 0.080519084 -0.009139589 -1.314645546 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p185.ar.00554 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900554 ar-00554 NA p185 NA Liu_NatMed_2019-p185 SKCM NA Skin Skin M1c TRUE IV Stable Disease FALSE FALSE TRUE 0 203 0 0 203 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p185 Liu_NatMed_2019 12 FALSE FALSE 0.305454349 0.606117518 0.65121458 0.618017692 0.782339516 TRUE 0.305454349 0.053823024 -0.057836197 0.049751745 0.022360463 0.854826859 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p187.ar.99988 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899988 ar-99988 NA p187 NA Liu_NatMed_2019-p187 SKCM NA Skin Skin M1a TRUE IV Complete Response TRUE FALSE TRUE 0 617 0 0 617 0 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK + Unnamed aCTLA4 TRUE TRUE TRUE TRUE Unknown None NA FALSE FALSE FALSE FALSE p187 Liu_NatMed_2019 10 FALSE FALSE 0.919793919 -0.042928704 0.614393872 -0.141839592 -0.515931355 FALSE -0.587273627 0.919793919 0.009070798 0.105301421 0.021910627 -0.775425375 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p188.ar.99976 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899976 ar-99976 NA p188 NA Liu_NatMed_2019-p188 SKCM NA Skin Acral M1a TRUE IV Progressive Disease FALSE TRUE FALSE 1 74 1 1 23 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unnamed None TRUE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p188 Liu_NatMed_2019 11 FALSE FALSE 2.337038169 -0.87518039 0.238931476 -1.518856656 -0.793499985 FALSE -0.84738905899999994 2.337038169 0.227481459 0.025345511 0.085293529 -0.813603191 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p189.ar.99982 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899982 ar-99982 NA p189 NA Liu_NatMed_2019-p189 SKCM NA Skin Acral M1c TRUE IV Partial Response TRUE FALSE TRUE 0 718 0 1 406 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p189 Liu_NatMed_2019 12 FALSE TRUE -0.071688125 0.325328523 0.631752594 0.274834926 0.247871032 FALSE 1.671865897 -0.071688125 -0.08881886 0.084621965 0.0044134 0.108425387 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p191.ar.00008 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900008 ar-00008 NA p191 NA Liu_NatMed_2019-p191 SKCM NA Skin Skin M1b TRUE IV Partial Response TRUE FALSE TRUE 0 658 0 0 658 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p191 Liu_NatMed_2019 12 FALSE TRUE -0.43635219 0.986228832 0.660597446 0.846249928 -0.594542514 FALSE 0.057521834 -0.43635219 0.003035164 -0.042785204 -0.023597519 -0.063212534 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p192.ar.00591 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900591 ar-00591 NA p192 NA Liu_NatMed_2019-p192 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 290 0 1 249 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 + aMAPK aCTLA4 TRUE TRUE TRUE TRUE Unknown None NA FALSE FALSE FALSE FALSE p192 Liu_NatMed_2019 11 FALSE TRUE -2.045143739 1.760822603 0.678090163 1.883094242 1.160342829 TRUE 0.706150735 -2.045143739 -0.226397996 0.050633059 -0.122793584 1.342276549 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p193.ar.00002 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900002 ar-00002 NA p193 NA Liu_NatMed_2019-p193 SKCM NA Skin Skin M0 FALSE III Stable Disease FALSE FALSE TRUE 0 659 0 1 476 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p193 Liu_NatMed_2019 10 FALSE FALSE 1.324870309 1.389255847 0.576711191 -0.054334745 0.600752561 TRUE 1.324870309 -0.551832939 -0.036023741 -0.028950473 -0.028047418 0.596564928 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p195.ar.00556 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900556 ar-00556 NA p195 NA Liu_NatMed_2019-p195 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 895 0 0 895 0 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p195 Liu_NatMed_2019 12 FALSE FALSE 0.608840538 -1.08910493 0.532534264 -1.518088717 0.221902047 TRUE 0.085044804 0.608840538 0.04400376 0.003748959 0.054898573 0.279112356 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p196.ar.00016 RNA-Seq RNA Brain Brain TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900016 ar-00016 NA p196 NA Liu_NatMed_2019-p196 SKCM NA Skin Occult M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 81 1 1 81 1 NA Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE TRUE Unknown None NA FALSE FALSE FALSE FALSE p196 Liu_NatMed_2019 8 FALSE TRUE -0.191266905 -1.390951374 0.545216453 1.159147658 -1.687490498 FALSE -0.77971514 -0.191266905 0.06369242 -0.106949654 0.001740489 -1.427210498 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p197.ar.00551 RNA-Seq RNA Brain Brain TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900551 ar-00551 NA p197 NA Liu_NatMed_2019-p197 SKCM NA Skin Skin M1c TRUE IV Partial Response TRUE FALSE TRUE 0 960 0 1 89 1 NA Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p197 Liu_NatMed_2019 6 FALSE FALSE 0.614667473 -1.692615909 0.273192923 -1.026363975 -1.210919796 FALSE -0.586564647 0.614667473 0.131136547 -0.095044585 0.046410644 -1.253172019 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p200.ar.00009 RNA-Seq RNA Brain Brain TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900009 ar-00009 NA p200 NA Liu_NatMed_2019-p200 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 512 1 1 108 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unnamed None TRUE FALSE FALSE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p200 Liu_NatMed_2019 10 FALSE FALSE 1.130526117 0.51339133 0.726280652 0.748497992 2.250949804 TRUE 1.130526117 -0.636617164 -0.048806857 -0.029957245 -0.021104927 1.816415227 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p201.ar.00592 RNA-Seq RNA Intestines Intestines: Rectal/Anal TRUE FALSE Pre NA FALSE FALSE 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900592 ar-00592 NA p201 NA Liu_NatMed_2019-p201 SKCM NA Skin Mucosal M0 FALSE III Progressive Disease FALSE TRUE FALSE 1 167 1 1 69 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE aMAPK None TRUE FALSE FALSE FALSE TRUE p201 Liu_NatMed_2019 7 TRUE FALSE 2.804552793 -2.164095516 0.351613925 -1.953274086 -1.696395932 FALSE -0.051847892 2.804552793 0.132962809 0.24403337 0.055241136 -1.624636738 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p203.ar.99990 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10899990 ar-99990 NA p203 NA Liu_NatMed_2019-p203 SKCM NA Skin Acral M1b TRUE IV Progressive Disease FALSE TRUE FALSE 1 626 1 1 99 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Combined ICI Combined ICI TRUE TRUE TRUE TRUE FALSE p203 Liu_NatMed_2019 10 FALSE FALSE 1.152117364 -0.260344851 0.513131905 -0.57117657 -0.045368249 FALSE 0.755079621 1.152117364 0.014284862 0.132230773 0.037554669 0.200086723 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p204.ar.00589 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900589 ar-00589 NA p204 NA Liu_NatMed_2019-p204 SKCM NA Skin Occult M1a TRUE IV Complete Response TRUE FALSE TRUE 0 819 0 0 630 0 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p204 Liu_NatMed_2019 11 FALSE FALSE 0.115892427 0.7801896 0.406770211 1.071257873 0.073737033 FALSE 0.16704229 0.115892427 0.057756436 -0.046480109 0.001604254 0.300059674 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p205.ar.00013 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900013 ar-00013 NA p205 NA Liu_NatMed_2019-p205 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 392 1 1 190 1 NA Female NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE FALSE FALSE p205 Liu_NatMed_2019 11 FALSE FALSE 1.112335729 -0.127837429 0.389576518 0.41361795 -0.611414022 FALSE 0.615464885 1.112335729 0.035745519 0.167647822 -0.032169767 -0.760177257 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Liu_NatMed_2019.p206.ar.00585 RNA-Seq RNA Skin Skin NA FALSE Pre NA FALSE NA 76 NA HiSeq 2500 NA QIAGEN AllPrep DNA/RNA mini kit; CitriSolv TRUE FFPE NA SRR10900585 ar-00585 NA p206 NA Liu_NatMed_2019-p206 SKCM NA Skin Skin M1c TRUE IV Progressive Disease FALSE TRUE FALSE 1 90 1 1 42 1 NA Male NA NA NA NA NA NA TRUE Pembro Pembro None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE aCTLA4 aCTLA4 TRUE TRUE TRUE FALSE Unknown None NA FALSE FALSE FALSE FALSE p206 Liu_NatMed_2019 11 FALSE FALSE 1.761543678 -0.090263334 0.232309786 -1.153250538 0.157657223 FALSE 1.179367263 1.761543678 -0.010574743 0.297109251 0.00311631 -0.135994792 Liu_NatMed_2019_Skin 0 0 0 0 0 0 0 1 0 0 0 0 0 ALL
Riaz_Nivolumab_2017.p001.ar.8813 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088813 ar-8813 p001 NA NA Riaz_Nivolumab_2017-p001 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 160 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p001 Riaz_Nivolumab_2017 10 FALSE TRUE -0.867867787 1.388064599 0.742518303 0.836532401 1.395218034 TRUE 0.230226347 -0.867867787 -7.87e-4 -0.106880433 -0.038367594 1.652565347 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p001.ar.8814 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088814 ar-8814 p001 NA NA Riaz_Nivolumab_2017-p001 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 160 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p001 Riaz_Nivolumab_2017 9 FALSE FALSE 0.247340161 0.156628431 0.752010914 0.542448902 -0.227602365 FALSE -1.070898934 0.247340161 0.130159422 -0.11536172 0.00502169 -0.05291617 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p002.ar.8815 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088815 ar-8815 p002 NA NA Riaz_Nivolumab_2017-p002 SKCM NA Skin Other M1b TRUE IV Stable Disease TRUE FALSE TRUE 1 275 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p002 Riaz_Nivolumab_2017 8 FALSE TRUE -0.414642165 1.715807541 0.446047856 1.195706361 0.697206887 TRUE 0.268503931 -0.414642165 -0.021262354 0.040007585 -0.074227729 0.853160057 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p002.ar.8816 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088816 ar-8816 p002 NA NA Riaz_Nivolumab_2017-p002 SKCM NA Skin Other M1b TRUE IV Stable Disease TRUE FALSE TRUE 1 275 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p002 Riaz_Nivolumab_2017 8 FALSE TRUE -0.515347522 1.638634373 0.623071885 1.293241708 0.553771074 TRUE -0.691343622 -0.515347522 0.040304994 -0.024186708 -0.097046261 1.062533988 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p003.ar.8877 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088877 ar-8877 p003 p003-On NA Riaz_Nivolumab_2017-p003 SKCM RAS Skin Skin NA NA NA Partial Response FALSE FALSE TRUE 0 1144 0 NA NA NA 52 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p003 Riaz_Nivolumab_2017 11 FALSE FALSE 0.096530772 0.030300187 0.661481651 0.018431548 -0.667375567 FALSE 0.100095432 0.096530772 0.065808508 -0.024263093 -0.0333047 -0.065881932 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p003.ar.8878 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088878 ar-8878 p003 p003-Pre NA Riaz_Nivolumab_2017-p003 SKCM RAS Skin Skin NA NA NA Partial Response FALSE FALSE TRUE 0 1144 0 NA NA NA 52 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p003 Riaz_Nivolumab_2017 10 TRUE FALSE 2.173871598 -1.601937173 0.368744654 -1.437966468 -2.216794992 FALSE -1.816923849 2.173871598 0.225758905 0.064616529 0.027153303 -2.400541868 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p004.ar.8879 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088879 ar-8879 p004 p004-On NA Riaz_Nivolumab_2017-p004 SKCM RAS Skin Skin M1b TRUE IV Stable Disease TRUE FALSE TRUE 1 633 1 NA NA NA 62 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p004 Riaz_Nivolumab_2017 10 FALSE FALSE 1.834557995 2.645255621 0.320178855 1.488218001 3.11833085 TRUE 1.834557995 -2.100563963 -0.201139443 0.03346836 -0.12791469 2.86049079 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p004.ar.8880 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088880 ar-8880 p004 p004-Pre NA Riaz_Nivolumab_2017-p004 SKCM RAS Skin Skin M1b TRUE IV Stable Disease TRUE FALSE TRUE 1 633 1 NA NA NA 62 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p004 Riaz_Nivolumab_2017 8 FALSE FALSE 0.120792907 -1.224587558 0.150970933 -1.35814083 -0.289879448 FALSE -0.97681892 0.120792907 0.107773656 -0.073102131 -0.018751096 -0.445366152 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p005.ar.8882 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088882 ar-8882 p005 p005-On NA Riaz_Nivolumab_2017-p005 SKCM TripleWt Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 222 1 NA NA NA 58 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p005 Riaz_Nivolumab_2017 6 FALSE TRUE -1.408017481 0.160137449 0.732718158 0.43501179 -0.064824948 FALSE -0.830462166 -1.408017481 0.01046803 -0.170611811 -0.067660696 -0.037064166 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p005.ar.8883 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088883 ar-8883 p005 p005-Pre NA Riaz_Nivolumab_2017-p005 SKCM TripleWt Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 222 1 NA NA NA 58 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p005 Riaz_Nivolumab_2017 5 FALSE FALSE 0.77143539 0.194795855 0.615516649 -0.318212835 0.59021729 TRUE 0.77143539 -2.26398724 -0.072891973 -0.255568642 -0.029296648 0.653226161 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p008.ar.8914 RNA-Seq RNA Skin Skin FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088914 ar-8914 p008 p008-Pre NA Riaz_Nivolumab_2017-p008 SKCM TripleWt Skin Mucosal M0 FALSE III Progressive Disease TRUE TRUE FALSE 1 259 1 NA NA NA 40 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p008 Riaz_Nivolumab_2017 7 FALSE FALSE 2.415315128 -0.091714312 0.259501421 -1.004292679 -0.186687896 FALSE 0.147256119 2.415315128 0.059160316 0.316322366 0.002611885 -0.256066888 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p008.ar.8915 RNA-Seq RNA Skin Skin FALSE TRUE On Primary Tumor FALSE TRUE NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088915 ar-8915 p008 p008-On NA Riaz_Nivolumab_2017-p008 SKCM TripleWt Skin Mucosal M0 FALSE III Progressive Disease TRUE TRUE FALSE 1 259 1 NA NA NA 40 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p008 Riaz_Nivolumab_2017 7 FALSE FALSE 1.062027591 0.404519599 0.63398961 -0.406884957 -0.011284307 FALSE -0.805001462 1.062027591 0.107220217 0.053969938 -0.01612038 -0.186323458 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p009.ar.8885 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088885 ar-8885 p009 p009-Pre NA Riaz_Nivolumab_2017-p009 SKCM BRAF Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 91.99999998 1 NA NA NA 46 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p009 Riaz_Nivolumab_2017 8 TRUE FALSE 2.643096279 -2.222490417 0.116748481 -1.23054733 -1.067789619 FALSE -0.167165212 2.643096279 0.180097172 0.164403933 0.053563863 -1.786745049 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p009.ar.8886 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088886 ar-8886 p009 p009-On NA Riaz_Nivolumab_2017-p009 SKCM BRAF Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 91.99999998 1 NA NA NA 46 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p009 Riaz_Nivolumab_2017 8 TRUE FALSE 2.739615983 -2.042440202 0.128339419 -1.602207466 -1.081763436 FALSE -0.241874016 2.739615983 0.206183618 0.132439441 0.067998039 -1.796007309 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p010.ar.8887 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088887 ar-8887 p010 p010-Pre NA Riaz_Nivolumab_2017-p010 SKCM NF1 Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 256 1 NA NA NA 81 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p010 Riaz_Nivolumab_2017 6 TRUE FALSE 1.066612561 -1.730276146 0.140365279 -1.21848946 -2.460913236 FALSE -2.165888151 1.066612561 0.108214992 -0.039054039 0.090047003 -2.680887209 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p010.ar.8888 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088888 ar-8888 p010 p010-On NA Riaz_Nivolumab_2017-p010 SKCM NF1 Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 256 1 NA NA NA 81 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p010 Riaz_Nivolumab_2017 6 FALSE FALSE 0.158069891 -0.14363573 0.159326493 0.441426212 -1.445591132 FALSE -1.701731903 0.158069891 -0.039842809 0.063766101 0.013188136 -1.140204967 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p011.ar.8916 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088916 ar-8916 p011 p011-Pre NA Riaz_Nivolumab_2017-p011 SKCM BRAF Skin Skin NA NA NA Progressive Disease TRUE TRUE FALSE 1 837.0000002 1 NA NA NA 61 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p011 Riaz_Nivolumab_2017 8 FALSE FALSE 0.033176515 1.810041243 0.684589257 0.53064892 0.76094451 TRUE 0.033176515 -0.49896682 -0.040212026 -0.006980594 -0.025769628 0.498295225 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p011.ar.8917 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088917 ar-8917 p011 p011-On NA Riaz_Nivolumab_2017-p011 SKCM BRAF Skin Skin NA NA NA Progressive Disease TRUE TRUE FALSE 1 837.0000002 1 NA NA NA 61 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p011 Riaz_Nivolumab_2017 8 FALSE TRUE -0.446730445 2.132059484 0.632846396 0.839448131 0.20418451 FALSE 0.027363855 -0.446730445 -0.027789132 -0.009224352 -0.028988608 0.626182735 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p013.ar.8918 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088918 ar-8918 NA p013-On NA Riaz_Nivolumab_2017-p013 SKCM BRAF Skin Skin NA NA NA Progressive Disease TRUE TRUE FALSE 1 280 1 NA NA NA 67 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p013 Riaz_Nivolumab_2017 9 FALSE FALSE 0.111412337 2.458340685 0.496585724 1.412748794 1.913489481 TRUE 0.111412337 -0.92134144 -0.053491866 0.026133299 -0.103820916 1.715129559 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p016.ar.8919 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088919 ar-8919 NA NA NA Riaz_Nivolumab_2017-p016 SKCM NA Skin NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA NA NA NA NA NA NA p016 Riaz_Nivolumab_2017 7 TRUE FALSE 1.560124639 -3.123259407 0.382755427 -1.911306131 -2.869580105 FALSE -2.021643137 1.560124639 0.155995966 -0.046272387 0.12289215 -2.885763637 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p017.ar.8889 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088889 ar-8889 p017 p017-On NA Riaz_Nivolumab_2017-p017 SKCM TripleWt Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 57 1 NA NA NA 48 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p017 Riaz_Nivolumab_2017 8 FALSE FALSE 0.89529548 -2.300859998 0.48367866 0.219853247 -2.214873876 FALSE -1.748096347 0.89529548 0.065155932 -0.024016829 0.086862294 -2.190392316 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p017.ar.8890 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088890 ar-8890 p017 p017-Pre NA Riaz_Nivolumab_2017-p017 SKCM TripleWt Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 57 1 NA NA NA 48 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p017 Riaz_Nivolumab_2017 8 TRUE FALSE 1.264724255 -2.45176603 0.461988504 0.234934043 -2.193264356 FALSE -2.021327293 1.264724255 0.076013464 0.018259995 0.091116268 -2.290587668 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p018.ar.8891 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088891 ar-8891 p018 p018-Pre NA Riaz_Nivolumab_2017-p018 SKCM BRAF Skin Skin M1a TRUE IV Partial Response FALSE FALSE TRUE 0 1073 0 NA NA NA 53 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p018 Riaz_Nivolumab_2017 8 FALSE FALSE 0.946874153 0.605793289 0.549280971 0.77492249 1.042645431 TRUE 0.946874153 -1.391909559 -0.015658704 -0.193558664 -0.018729121 1.016602298 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p018.ar.8892 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088892 ar-8892 p018 p018-On NA Riaz_Nivolumab_2017-p018 SKCM BRAF Skin Skin M1a TRUE IV Partial Response FALSE FALSE TRUE 0 1073 0 NA NA NA 53 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p018 Riaz_Nivolumab_2017 13 FALSE FALSE 2.290128144 0.874327571 0.391745746 0.949843717 2.84206125 TRUE 2.290128144 -3.339878135 -0.258005153 -0.245299043 0.003573211 2.396758498 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p023.ar.8817 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088817 ar-8817 p023 p023-On NA Riaz_Nivolumab_2017-p023 SKCM BRAF Skin Skin M1c TRUE IV NA NA NA NA 1 52 1 NA NA NA 53 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p023 Riaz_Nivolumab_2017 6 FALSE FALSE 0.288583486 1.007429084 0.402676428 0.3500503 1.162584277 TRUE 0.288583486 0.622631357 0.163694902 -0.029445944 -0.047062861 1.51924915 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p023.ar.8818 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088818 ar-8818 p023 p023-Pre NA Riaz_Nivolumab_2017-p023 SKCM BRAF Skin Skin M1c TRUE IV NA NA NA NA 1 52 1 NA NA NA 53 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p023 Riaz_Nivolumab_2017 6 FALSE FALSE 1.269715614 0.420596849 0.30024467 0.850757316 0.144656315 FALSE 1.098022169 1.269715614 0.084738668 0.191277374 -0.068275425 0.330898075 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p024.ar.8906 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088906 ar-8906 NA p024-Pre NA Riaz_Nivolumab_2017-p024 SKCM TripleWt Skin Other M1c TRUE IV Progressive Disease TRUE TRUE FALSE 0 149 0 NA NA NA 63 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p024 Riaz_Nivolumab_2017 7 FALSE TRUE -2.79610281 -0.58119329 0.715704941 0.742379989 -0.283809473 FALSE 1.027195772 -2.79610281 -0.40040709 0.079059045 -0.080138377 -0.373367075 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p026.ar.8920 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088920 ar-8920 p026 p026-Pre NA Riaz_Nivolumab_2017-p026 SKCM RAS Skin Mucosal M1b TRUE IV Stable Disease TRUE FALSE TRUE 0 952 0 NA NA NA 22 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p026 Riaz_Nivolumab_2017 6 FALSE FALSE 0.259354044 -0.574526058 0.400594993 -0.964622434 -0.923389419 FALSE -1.439426439 0.259354044 0.083870253 -0.058531484 0.008632397 -1.187649309 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p026.ar.8921 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088921 ar-8921 p026 p026-On NA Riaz_Nivolumab_2017-p026 SKCM RAS Skin Mucosal M1b TRUE IV Stable Disease TRUE FALSE TRUE 0 952 0 NA NA NA 22 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p026 Riaz_Nivolumab_2017 6 FALSE FALSE 0.461376165 -1.108298603 0.441049823 -1.086507961 -1.692332122 FALSE -1.625052514 0.461376165 0.105641508 -0.048488848 0.003804272 -1.770670935 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p027.ar.8907 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088907 ar-8907 p027 p027-On NA Riaz_Nivolumab_2017-p027 SKCM BRAF Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 475 1 NA NA NA 65 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p027 Riaz_Nivolumab_2017 6 FALSE FALSE 0.652767788 -0.781403238 0.369495368 -0.079031115 -1.093791988 FALSE 0.143889584 0.652767788 0.043345203 0.068638534 -0.001298271 -0.550703313 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p027.ar.8908 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088908 ar-8908 p027 p027-Pre NA Riaz_Nivolumab_2017-p027 SKCM BRAF Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 475 1 NA NA NA 65 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p027 Riaz_Nivolumab_2017 7 FALSE TRUE -0.297573065 -1.50820183 0.510849444 -1.111799864 -1.23330036 FALSE -0.266144672 -0.297573065 0.014663238 -0.083096139 0.026336386 -0.65742637 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p028.ar.8922 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088922 ar-8922 p028 p028-Pre NA Riaz_Nivolumab_2017-p028 SKCM TripleWt Skin Skin NA NA NA Progressive Disease TRUE TRUE FALSE 1 739.9999999 1 NA NA NA 79 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p028 Riaz_Nivolumab_2017 9 FALSE FALSE 0.244684744 -0.387909562 0.55649978 -0.843514152 -0.490070555 FALSE -1.394482667 0.244684744 0.002768559 -0.024111265 0.060046694 -0.551536193 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p028.ar.8923 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088923 ar-8923 p028 p028-On NA Riaz_Nivolumab_2017-p028 SKCM TripleWt Skin Skin NA NA NA Progressive Disease TRUE TRUE FALSE 1 739.9999999 1 NA NA NA 79 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p028 Riaz_Nivolumab_2017 8 FALSE FALSE 0.299297848 1.597082669 0.469446931 0.761993241 1.896572308 TRUE 0.299297848 -0.963700625 -0.096760947 -0.003608657 -0.033733726 2.038236347 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p029.ar.8909 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088909 ar-8909 NA p029-Pre NA Riaz_Nivolumab_2017-p029 SKCM RAS Skin Other M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 273 1 NA NA NA 57 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p029 Riaz_Nivolumab_2017 8 FALSE FALSE 0.593031054 -0.403325915 0.644973055 -0.062398763 -1.164970673 FALSE -0.853468861 0.593031054 0.099681186 -0.061095689 0.040546384 -0.894446199 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p030.ar.8910 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088910 ar-8910 p030 p030-On NA Riaz_Nivolumab_2017-p030 SKCM TripleWt Skin Mucosal M1a TRUE IV Complete Response FALSE FALSE TRUE 0 1053 0 NA NA NA 89 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p030 Riaz_Nivolumab_2017 9 FALSE FALSE 2.603611909 1.889706176 0.471997154 1.611528095 2.734719863 TRUE 2.603611909 -3.782729487 -0.478238478 0.055772994 -0.120768627 2.759603245 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p030.ar.8911 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088911 ar-8911 p030 p030-Pre NA Riaz_Nivolumab_2017-p030 SKCM TripleWt Skin Mucosal M1a TRUE IV Complete Response FALSE FALSE TRUE 0 1053 0 NA NA NA 89 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p030 Riaz_Nivolumab_2017 9 FALSE FALSE 0.992501715 -1.251886314 0.793418208 -1.425327155 -1.617832765 FALSE -1.63332367 0.992501715 0.184726841 -0.164160549 0.099521403 -1.826332555 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p031.ar.8912 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088912 ar-8912 p031 p031-On NA Riaz_Nivolumab_2017-p031 SKCM TripleWt Skin Other M1a TRUE IV Progressive Disease TRUE TRUE FALSE 0 961.0000001 0 NA NA NA 56 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p031 Riaz_Nivolumab_2017 10 FALSE FALSE 0.084050953 1.338153662 0.730591569 1.332027339 1.00942078 TRUE 0.084050953 -2.013066744 -0.080604362 -0.195800231 -0.041887461 0.947363271 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p031.ar.8913 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088913 ar-8913 p031 p031-Pre NA Riaz_Nivolumab_2017-p031 SKCM TripleWt Skin Other M1a TRUE IV Progressive Disease TRUE TRUE FALSE 0 961.0000001 0 NA NA NA 56 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p031 Riaz_Nivolumab_2017 8 FALSE TRUE -0.251776953 0.378340805 0.729378666 -0.085937612 -0.206409762 FALSE -0.325324185 -0.251776953 -0.017568557 -0.061428981 0.035407929 -0.272819383 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p032.ar.8893 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088893 ar-8893 NA p032-On NA Riaz_Nivolumab_2017-p032 SKCM BRAF Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 0 114 0 NA NA NA 34 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p032 Riaz_Nivolumab_2017 8 FALSE TRUE -4.807744689 -1.521898169 0.039422162 3.630814218 -1.917019424 FALSE 1.851561989 -4.807744689 -0.319483798 -0.186780137 -0.214456032 -1.681873809 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p034.ar.8928 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088928 ar-8928 p034 p034-On NA Riaz_Nivolumab_2017-p034 SKCM BRAF Skin Skin M1b TRUE IV Partial Response FALSE FALSE TRUE 0 833.9999997 0 NA NA NA 71 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p034 Riaz_Nivolumab_2017 9 FALSE TRUE -2.716212107 0.688758284 0.282287278 0.687326205 2.592261103 TRUE 2.424732551 -2.716212107 -0.430596313 0.099602801 -0.051575676 2.026935613 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p034.ar.8929 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088929 ar-8929 p034 p034-Pre NA Riaz_Nivolumab_2017-p034 SKCM BRAF Skin Skin M1b TRUE IV Partial Response FALSE FALSE TRUE 0 833.9999997 0 NA NA NA 71 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p034 Riaz_Nivolumab_2017 8 FALSE TRUE -2.551724024 1.655291026 0.483916642 1.08145862 2.387613351 TRUE 2.159591121 -2.551724024 -0.345297407 0.053036536 -0.064960799 2.017403081 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p035.ar.8930 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088930 ar-8930 NA NA NA Riaz_Nivolumab_2017-p035 SKCM NA Skin NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA NA NA NA NA NA NA p035 Riaz_Nivolumab_2017 11 FALSE FALSE 1.000895213 1.504063852 0.659723717 0.798700619 2.11699145 TRUE 1.000895213 -2.293480829 -0.173719449 -0.110789993 -0.061025811 1.901589673 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p036.ar.8898 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088898 ar-8898 p036 p036-Pre NA Riaz_Nivolumab_2017-p036 SKCM TripleWt Skin Skin M1c TRUE IV Stable Disease TRUE FALSE TRUE 0 1081 0 NA NA NA 58 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p036 Riaz_Nivolumab_2017 6 TRUE FALSE 1.20309435 -1.81072951 0.296033903 -0.50786627 -1.66752056 FALSE 1.028466413 1.20309435 -0.177870101 0.322564293 0.063160933 -1.332814608 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p036.ar.8899 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088899 ar-8899 p036 p036-On NA Riaz_Nivolumab_2017-p036 SKCM TripleWt Skin Skin M1c TRUE IV Stable Disease TRUE FALSE TRUE 0 1081 0 NA NA NA 58 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p036 Riaz_Nivolumab_2017 9 FALSE TRUE -0.611712773 0.261788473 0.261745569 1.059553253 0.631461777 TRUE 1.579268316 -0.611712773 -0.027060869 0.019744015 -0.085326245 1.260669556 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p037.ar.8900 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088900 ar-8900 p037 p037-Pre NA Riaz_Nivolumab_2017-p037 SKCM RAS Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 646 1 NA NA NA 63 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p037 Riaz_Nivolumab_2017 6 FALSE FALSE 1.583525678 -0.800048979 0.319183573 -0.664595695 -1.098111325 FALSE 0.132206372 1.583525678 0.122618722 0.062513496 0.055129904 -1.02553529 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p037.ar.8903 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088903 ar-8903 p037 p037-On NA Riaz_Nivolumab_2017-p037 SKCM RAS Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 646 1 NA NA NA 63 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p037 Riaz_Nivolumab_2017 8 FALSE FALSE 0.507138429 0.463017234 0.906059898 -0.113673094 -0.674419356 FALSE -0.547711824 0.507138429 0.066307878 0.013628925 -0.015778883 0.346639969 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p038.ar.8894 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088894 ar-8894 p038 p038-On NA Riaz_Nivolumab_2017-p038 SKCM TripleWt Skin Skin M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 167 1 NA NA NA 54 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p038 Riaz_Nivolumab_2017 7 TRUE FALSE 1.62562043 -1.473900568 0.287564346 -1.466200916 -1.750446235 FALSE -1.235082597 1.62562043 0.151431768 0.027016629 0.059738278 -1.94657451 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p038.ar.8895 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088895 ar-8895 p038 p038-Pre NA Riaz_Nivolumab_2017-p038 SKCM TripleWt Skin Skin M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 167 1 NA NA NA 54 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p038 Riaz_Nivolumab_2017 6 TRUE FALSE 2.030220858 -1.912852506 0.42110874 -1.359681539 -1.872714388 FALSE -1.599682654 2.030220858 0.182752766 0.027734149 0.087046616 -2.057098496 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p039.ar.8819 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088819 ar-8819 NA NA NA Riaz_Nivolumab_2017-p039 SKCM NA Skin Mucosal M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 166 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p039 Riaz_Nivolumab_2017 8 TRUE FALSE 2.220186303 -2.937686914 0.120483309 -1.914695322 -2.279082689 FALSE -2.389343779 2.220186303 0.208461981 -0.022909713 0.146426878 -2.417326777 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p044.ar.8924 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088924 ar-8924 p044 p044-Pre NA Riaz_Nivolumab_2017-p044 SKCM BRAF Skin Mucosal NA NA NA Partial Response FALSE FALSE TRUE 0 1093 0 NA NA NA 61 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p044 Riaz_Nivolumab_2017 9 FALSE TRUE -0.18424233 1.567124168 0.199483116 0.066761986 0.663052275 TRUE -0.18424233 1.760247327 0.100508712 0.196841331 -0.02339662 0.959156167 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p044.ar.8925 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088925 ar-8925 p044 p044-On NA Riaz_Nivolumab_2017-p044 SKCM BRAF Skin Mucosal NA NA NA Partial Response FALSE FALSE TRUE 0 1093 0 NA NA NA 61 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p044 Riaz_Nivolumab_2017 7 FALSE FALSE 1.419898847 -0.205613113 0.184727895 -0.799896309 1.109892894 TRUE 1.419898847 1.506224053 -0.149254601 0.372524614 0.034501591 0.926438186 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p046.ar.8904 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088904 ar-8904 p046 p046-Pre NA Riaz_Nivolumab_2017-p046 SKCM BRAF Skin Other M1a TRUE IV Progressive Disease TRUE TRUE FALSE 1 227 1 NA NA NA 79 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p046 Riaz_Nivolumab_2017 7 FALSE TRUE -1.724614541 0.171117251 0.325821772 0.885223203 0.268738526 FALSE 1.993482881 -1.724614541 -0.392046912 0.169504417 -0.011679088 0.751648254 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p046.ar.8905 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088905 ar-8905 p046 p046-On NA Riaz_Nivolumab_2017-p046 SKCM BRAF Skin Other M1a TRUE IV Progressive Disease TRUE TRUE FALSE 1 227 1 NA NA NA 79 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p046 Riaz_Nivolumab_2017 9 FALSE TRUE -1.929233285 0.910150718 0.340498958 1.17402254 0.320849804 FALSE 1.607452865 -1.929233285 -0.383281084 0.171770349 -0.052380092 0.586632038 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p047.ar.8836 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088836 ar-8836 p047 p047-Pre NA Riaz_Nivolumab_2017-p047 SKCM BRAF Skin Skin M1b TRUE IV Progressive Disease TRUE TRUE FALSE 1 718.0000002 1 NA NA NA 52 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p047 Riaz_Nivolumab_2017 7 FALSE FALSE 1.522419937 0.136825076 0.463855055 0.360953903 -0.715895021 FALSE 0.05828132 1.522419937 0.048272806 0.23678955 -0.045289542 -0.558707129 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p047.ar.8837 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088837 ar-8837 p047 p047-On NA Riaz_Nivolumab_2017-p047 SKCM BRAF Skin Skin M1b TRUE IV Progressive Disease TRUE TRUE FALSE 1 718.0000002 1 NA NA NA 52 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p047 Riaz_Nivolumab_2017 7 FALSE FALSE 1.349903597 0.371664874 0.569855617 0.426456458 -0.351219794 FALSE -0.25474873 1.349903597 0.098985059 0.150432369 -0.044335649 -0.425868157 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p048.ar.8896 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088896 ar-8896 p048 p048-On NA Riaz_Nivolumab_2017-p048 SKCM TripleWt Skin Skin M1c TRUE IV Complete Response FALSE FALSE TRUE 0 1046 0 NA NA NA 44 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p048 Riaz_Nivolumab_2017 10 FALSE TRUE -0.843185153 -2.116172631 0.517544154 -1.266170801 -1.131589559 FALSE 0.632110148 -0.843185153 -0.110188037 -0.024744374 0.015125791 -1.260444119 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p048.ar.8897 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088897 ar-8897 p048 p048-Pre NA Riaz_Nivolumab_2017-p048 SKCM TripleWt Skin Skin M1c TRUE IV Complete Response FALSE FALSE TRUE 0 1046 0 NA NA NA 44 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p048 Riaz_Nivolumab_2017 9 FALSE TRUE -0.903453308 -0.219457599 0.53754012 -0.780850084 -0.229213736 FALSE 0.494834395 -0.903453308 -0.125566278 -6.94e-4 0.001029141 -0.360474852 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p049.ar.8824 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088824 ar-8824 p049 p049-Pre NA Riaz_Nivolumab_2017-p049 SKCM RAS Skin Skin NA NA NA Partial Response FALSE FALSE TRUE 0 826.9999997 0 NA NA NA 52 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p049 Riaz_Nivolumab_2017 8 FALSE FALSE 0.042557318 2.58201265 0.595723555 0.994148117 1.895261339 TRUE 1.459796372 0.042557318 -0.097301973 0.158165525 -0.039613141 1.631428571 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p049.ar.8825 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088825 ar-8825 p049 p049-On NA Riaz_Nivolumab_2017-p049 SKCM RAS Skin Skin NA NA NA Partial Response FALSE FALSE TRUE 0 826.9999997 0 NA NA NA 52 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p049 Riaz_Nivolumab_2017 9 FALSE TRUE -2.324217042 3.878693057 0.70416114 1.611645542 3.929369361 TRUE 2.274979894 -2.324217042 -0.190122006 -0.010635957 -0.14945699 3.984958431 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p052.ar.8838 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088838 ar-8838 p052 p052-On NA Riaz_Nivolumab_2017-p052 SKCM TripleWt Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 476 1 NA NA NA 45 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p052 Riaz_Nivolumab_2017 7 FALSE FALSE 2.08653631 -0.453792615 0.127224962 -0.237095675 -0.7229686 FALSE -0.43000673 2.08653631 0.166739017 0.139398368 0.005639255 -0.609673174 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p052.ar.8839 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088839 ar-8839 p052 p052-Pre NA Riaz_Nivolumab_2017-p052 SKCM TripleWt Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 476 1 NA NA NA 45 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p052 Riaz_Nivolumab_2017 8 FALSE FALSE 1.29993638 -0.888386758 0.247577748 -0.598095914 -0.685751574 FALSE -0.284775019 1.29993638 0.086330583 0.094137699 0.014354859 -0.719557685 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p058.ar.8820 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088820 ar-8820 NA p058-On NA Riaz_Nivolumab_2017-p058 SKCM NF1 Skin Skin M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 499 1 NA NA NA 53 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p058 Riaz_Nivolumab_2017 8 FALSE TRUE -0.276152567 2.525616377 0.344399529 1.208170339 1.892378167 TRUE -0.31759447 -0.276152567 0.040351632 -0.005893335 -0.07906638 1.769809535 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p059.ar.8821 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088821 ar-8821 NA p059-Pre NA Riaz_Nivolumab_2017-p059 SKCM RAS Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 707.9999997 1 NA NA NA 49 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p059 Riaz_Nivolumab_2017 8 FALSE FALSE 0.823140409 1.054538592 0.285454263 1.083659851 0.91395503 TRUE 0.823140409 -0.472977043 -0.035743698 0.023117063 -0.066435381 1.385652866 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p062.ar.8855 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088855 ar-8855 p062 NA NA Riaz_Nivolumab_2017-p062 SKCM NA Skin Ocular/Uveal M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 472 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p062 Riaz_Nivolumab_2017 7 FALSE FALSE 0.332963751 -1.276808458 0.596369645 -0.271710012 -2.160363958 FALSE -1.462952581 0.332963751 0.057253246 -0.079690278 0.067462775 -1.914137995 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p062.ar.8856 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088856 ar-8856 p062 NA NA Riaz_Nivolumab_2017-p062 SKCM NA Skin Ocular/Uveal M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 472 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p062 Riaz_Nivolumab_2017 8 FALSE FALSE 0.600585042 -1.784961922 0.799735487 -0.728961982 -1.602864491 FALSE -1.440286786 0.600585042 0.146884122 -0.168082155 0.098000038 -2.060574406 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p065.ar.8857 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088857 ar-8857 p065 p065-Pre NA Riaz_Nivolumab_2017-p065 SKCM TripleWt Skin Acral M1b TRUE IV Stable Disease TRUE FALSE TRUE 0 692 0 NA NA NA 63 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p065 Riaz_Nivolumab_2017 9 FALSE FALSE 1.177797462 1.471843179 0.394388258 0.157150164 0.522051716 FALSE -0.009445362 1.177797462 0.100838238 0.113441919 -0.033231622 0.216163703 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p065.ar.8858 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088858 ar-8858 p065 p065-On NA Riaz_Nivolumab_2017-p065 SKCM TripleWt Skin Acral M1b TRUE IV Stable Disease TRUE FALSE TRUE 0 692 0 NA NA NA 63 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p065 Riaz_Nivolumab_2017 9 FALSE FALSE 0.88448016 2.24004494 0.417363464 0.671350519 1.142910043 TRUE 0.16909957 0.88448016 0.111259514 0.118288309 -0.092625458 1.066411249 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p066.ar.8826 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088826 ar-8826 NA p066-Pre NA Riaz_Nivolumab_2017-p066 SKCM BRAF Skin Skin NA NA NA Progressive Disease TRUE TRUE FALSE 1 542 1 NA NA NA 49 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p066 Riaz_Nivolumab_2017 8 TRUE FALSE 1.569849944 -1.363688671 0.725879588 -0.652964949 -1.452520782 FALSE -1.579984418 1.569849944 0.187998912 -0.003152894 0.03762051 -1.61745671 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p067.ar.8840 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088840 ar-8840 p067 p067-Pre NA Riaz_Nivolumab_2017-p067 SKCM TripleWt Skin Ocular/Uveal M1c TRUE IV Stable Disease TRUE FALSE TRUE 0 1032 0 NA NA NA 33 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p067 Riaz_Nivolumab_2017 8 FALSE TRUE -0.953721633 -1.871959904 0.800598492 -1.428418524 -0.129506673 FALSE 0.594622161 -0.953721633 -0.039325943 -0.160505943 0.05219055 -0.467176268 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p067.ar.8841 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088841 ar-8841 p067 p067-On NA Riaz_Nivolumab_2017-p067 SKCM TripleWt Skin Ocular/Uveal M1c TRUE IV Stable Disease TRUE FALSE TRUE 0 1032 0 NA NA NA 33 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p067 Riaz_Nivolumab_2017 9 FALSE TRUE -1.151383134 -1.995206038 0.753196667 -1.466899174 -0.357835883 FALSE 0.670408023 -1.151383134 -0.063376157 -0.160016738 0.049352008 -0.776324408 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p068.ar.8859 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088859 ar-8859 NA p068-On NA Riaz_Nivolumab_2017-p068 SKCM TripleWt Skin Skin M1b TRUE IV Partial Response FALSE FALSE TRUE 0 842.0000001 0 NA NA NA 69 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p068 Riaz_Nivolumab_2017 7 TRUE FALSE 1.481423315 -2.100873751 0.496414844 -0.925621797 -1.633336211 FALSE -1.595792544 1.481423315 0.197221021 -0.035001083 0.054354906 -1.817195878 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p069.ar.8860 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088860 ar-8860 NA NA NA Riaz_Nivolumab_2017-p069 SKCM NA Skin NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA NA NA NA NA NA NA p069 Riaz_Nivolumab_2017 9 FALSE FALSE 3.037581442 1.024250143 0.278008376 0.54997487 2.382252396 TRUE 3.037581442 -3.541194852 -0.444782383 0.024144475 -0.084906824 2.156378347 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p072.ar.8861 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088861 ar-8861 NA p072-Pre NA Riaz_Nivolumab_2017-p072 SKCM BRAF Skin Skin M1b TRUE IV Partial Response FALSE FALSE TRUE 1 770 1 NA NA NA 43 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p072 Riaz_Nivolumab_2017 7 TRUE FALSE 1.650744587 -1.990910633 0.447111781 -1.284632443 -2.805305266 FALSE -2.08599951 1.650744587 0.18913438900000001 0.013492945 0.033829715 -2.762077743 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p076.ar.8827 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088827 ar-8827 NA p076-Pre NA Riaz_Nivolumab_2017-p076 SKCM RAS Skin Skin M1c TRUE IV NA NA NA NA 1 10 1 NA NA NA 60 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p076 Riaz_Nivolumab_2017 6 TRUE FALSE 2.490475707 -2.78025285 0.879661715 1.933530522 -2.244266809 FALSE -1.0055524 2.490475707 0.251712736 0.134371503 -0.021954908 -1.390147084 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p077.ar.8846 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088846 ar-8846 p077 p077-Pre NA Riaz_Nivolumab_2017-p077 SKCM BRAF Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 471 1 NA NA NA 56 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p077 Riaz_Nivolumab_2017 9 FALSE FALSE 1.578596979 1.307969107 0.562793558 1.849102107 1.744375008 TRUE 1.578596979 -0.804597218 -0.045358711 -0.047579816 -0.027838464 1.45916474 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p077.ar.8847 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088847 ar-8847 p077 p077-On NA Riaz_Nivolumab_2017-p077 SKCM BRAF Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 471 1 NA NA NA 56 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p077 Riaz_Nivolumab_2017 12 FALSE FALSE 2.674076435 1.24740718 0.384687642 0.704110503 2.297957229 TRUE 2.674076435 -1.862544929 -0.2258288 -0.049692209 0.011848479 2.179123569 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p078.ar.8862 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088862 ar-8862 p078 NA NA Riaz_Nivolumab_2017-p078 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 77.99999998 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p078 Riaz_Nivolumab_2017 6 FALSE FALSE 1.045008629 -0.463917623 0.554933956 -0.799354193 -0.265065756 FALSE 0.195586087 1.045008629 0.003002427 0.113758071 0.049952911 -0.362121712 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p078.ar.8864 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088864 ar-8864 p078 NA NA Riaz_Nivolumab_2017-p078 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 77.99999998 1 NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p078 Riaz_Nivolumab_2017 7 TRUE FALSE 2.445043369 -3.036544878 0.314498116 -1.900663704 -2.167620537 FALSE -2.047544308 2.445043369 0.250719886 -0.043799852 0.149755702 -2.413107103 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p079.ar.8848 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088848 ar-8848 p079 p079-On NA Riaz_Nivolumab_2017-p079 SKCM NF1 Skin Other NA NA NA Stable Disease TRUE FALSE TRUE 1 218 1 NA NA NA 64 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p079 Riaz_Nivolumab_2017 7 FALSE FALSE 1.603064186 0.706902148 0.431479921 -0.467454824 0.17180537 FALSE -1.07288784 1.603064186 0.167273277 0.01858108 0.037880851 -0.357700578 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p079.ar.8849 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088849 ar-8849 p079 p079-Pre NA Riaz_Nivolumab_2017-p079 SKCM NF1 Skin Other NA NA NA Stable Disease TRUE FALSE TRUE 1 218 1 NA NA NA 64 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p079 Riaz_Nivolumab_2017 7 FALSE FALSE 1.500088851 0.11318657 0.423371614 -0.753714073 -0.403398706 FALSE -1.436256798 1.500088851 0.206369564 -0.039721102 0.038128781 -0.746654423 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p080.ar.8865 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088865 ar-8865 NA NA NA Riaz_Nivolumab_2017-p080 SKCM NA Skin NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA NA NA NA NA NA NA p080 Riaz_Nivolumab_2017 10 FALSE TRUE -0.645526101 1.246916046 0.761158112 0.586448208 1.334986565 TRUE -0.645526101 -0.176642171 0.071794252 -0.120659377 -0.003751682 0.999368038 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p081.ar.8828 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088828 ar-8828 NA NA NA Riaz_Nivolumab_2017-p081 SKCM NA Skin NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA NA NA NA NA NA NA p081 Riaz_Nivolumab_2017 7 FALSE FALSE 1.023486208 2.471667111 0.569590084 0.269210056 2.470778944 TRUE 1.023486208 -1.290250227 -0.065844723 -0.047340726 -0.080137127 2.475424969 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p082.ar.8822 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088822 ar-8822 p082 p082-Pre NA Riaz_Nivolumab_2017-p082 SKCM TripleWt Skin Ocular/Uveal M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 429 1 NA NA NA 60 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p082 Riaz_Nivolumab_2017 8 FALSE FALSE 0.08828768 0.319797645 0.480056569 -0.015658632 0.079367893 FALSE -0.975699584 0.08828768 -0.013116257 -0.006220557 0.032798084 -0.330445559 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p082.ar.8823 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088823 ar-8823 p082 p082-On NA Riaz_Nivolumab_2017-p082 SKCM TripleWt Skin Ocular/Uveal M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 429 1 NA NA NA 60 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p082 Riaz_Nivolumab_2017 10 FALSE TRUE -0.968227678 1.394377937 0.675141169 0.905422244 1.44655595 TRUE 0.187742823 -0.968227678 -0.072202442 -0.062910912 -0.008600077 1.155918483 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p084.ar.8850 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088850 ar-8850 p084 p084-Pre NA Riaz_Nivolumab_2017-p084 SKCM TripleWt Skin Other M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 151 1 NA NA NA 48 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p084 Riaz_Nivolumab_2017 7 TRUE FALSE 1.629356638 -3.287704515 0.838760258 -1.650524871 -2.835992681 FALSE -1.394711878 1.629356638 0.073545049 0.043962258 0.124299351 -2.935785857 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p084.ar.8851 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088851 ar-8851 p084 p084-On NA Riaz_Nivolumab_2017-p084 SKCM TripleWt Skin Other M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 151 1 NA NA NA 48 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p084 Riaz_Nivolumab_2017 7 TRUE FALSE 2.021657202 -3.231736674 0.844292079 -1.748385303 -2.888569327 FALSE -1.470172009 2.021657202 0.094959174 0.073793028 0.13389236 -2.951880206 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p085.ar.8829 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088829 ar-8829 p085 p085-Pre NA Riaz_Nivolumab_2017-p085 SKCM RAS Skin Skin M1a TRUE IV Progressive Disease TRUE TRUE FALSE 0 903.9999997 0 NA NA NA 66 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p085 Riaz_Nivolumab_2017 6 TRUE FALSE 1.528862176 -2.012348013 0.842249245 -1.800910515 -2.273224726 FALSE -1.873722905 1.528862176 0.179655486 0.006454058 0.026541819 -2.438447248 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p085.ar.8830 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088830 ar-8830 p085 p085-On NA Riaz_Nivolumab_2017-p085 SKCM RAS Skin Skin M1a TRUE IV Progressive Disease TRUE TRUE FALSE 0 903.9999997 0 NA NA NA 66 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p085 Riaz_Nivolumab_2017 8 TRUE FALSE 2.049385383 -1.710526093 0.679598151 -1.635349139 -1.756800686 FALSE -1.335282197 2.049385383 0.184972877 0.094956641 0.01991958 -1.66064666 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p087.ar.8852 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088852 ar-8852 NA p087-On NA Riaz_Nivolumab_2017-p087 SKCM RAS Skin Skin NA NA NA Stable Disease TRUE FALSE TRUE 0 973.9999997 0 NA NA NA 68 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p087 Riaz_Nivolumab_2017 9 FALSE FALSE 1.798419075 3.55049798 0.639634865 2.369647988 3.268052521 TRUE 1.798419075 -3.223607734 -0.262105248 -0.071570831 -0.13472151 2.907715632 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p089.ar.8831 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088831 ar-8831 p089 p089-Pre NA Riaz_Nivolumab_2017-p089 SKCM TripleWt Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 844.0000002 1 NA NA NA 56 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p089 Riaz_Nivolumab_2017 9 TRUE FALSE 2.385907325 -1.202918548 0.554012871 -1.402014149 -1.748059932 FALSE 0.372630105 2.385907325 0.152271827 0.173611986 0.032130363 -1.593135492 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p089.ar.8832 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088832 ar-8832 p089 p089-On NA Riaz_Nivolumab_2017-p089 SKCM TripleWt Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 844.0000002 1 NA NA NA 56 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p089 Riaz_Nivolumab_2017 9 FALSE FALSE 2.280974238 0.859110321 0.442539066 -0.115910818 -0.730055043 FALSE 0.640541322 2.280974238 0.177298925 0.177954711 -0.016679849 -0.10232643 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p090.ar.8866 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088866 ar-8866 NA p090-Pre NA Riaz_Nivolumab_2017-p090 SKCM TripleWt Skin Mucosal M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 174 1 NA NA NA 60 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p090 Riaz_Nivolumab_2017 10 FALSE TRUE -0.2849192 0.112373018 0.653062897 0.520025339 1.066885459 TRUE 0.083943752 -0.2849192 0.067944048 -0.050055391 -0.077610684 1.463998946 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p092.ar.8867 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088867 ar-8867 p092 p092-Pre NA Riaz_Nivolumab_2017-p092 SKCM RAS Skin Skin NA NA NA Stable Disease TRUE FALSE TRUE 1 333 1 NA NA NA 58 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p092 Riaz_Nivolumab_2017 11 FALSE TRUE -0.089618468 1.82520673 0.485700737 1.395602265 1.85103171 TRUE 0.544795626 -0.089618468 0.085447016 -0.033086018 -0.064273546 2.007491831 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p092.ar.8870 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088870 ar-8870 p092 p092-On NA Riaz_Nivolumab_2017-p092 SKCM RAS Skin Skin NA NA NA Stable Disease TRUE FALSE TRUE 1 333 1 NA NA NA 58 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p092 Riaz_Nivolumab_2017 9 FALSE TRUE -2.374694022 3.680491776 0.853789638 2.280045513 4.520766766 TRUE 1.298703901 -2.374694022 -0.075455325 -0.149387422 -0.140463806 4.403523329 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p093.ar.8833 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088833 ar-8833 NA p093-On NA Riaz_Nivolumab_2017-p093 SKCM TripleWt Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 0 849.0000001 0 NA NA NA 52 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p093 Riaz_Nivolumab_2017 8 FALSE FALSE 1.276271316 -0.987691346 0.438165151 -0.927592024 -1.429636246 FALSE -0.827636425 1.276271316 0.160960052 -0.018508086 0.045657686 -1.360774829 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p094.ar.8842 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088842 ar-8842 p094 p094-On NA Riaz_Nivolumab_2017-p094 SKCM BRAF Skin Skin M1c TRUE IV Complete Response FALSE FALSE TRUE 0 980.9999997 0 NA NA NA 41 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p094 Riaz_Nivolumab_2017 10 FALSE TRUE -0.414056062 -0.007631214 0.400693993 -0.672659132 -0.247692469 FALSE 0.366932626 -0.414056062 -0.063344764 -0.006959414 0.008616438 -0.231785373 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p094.ar.8843 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088843 ar-8843 p094 p094-Pre NA Riaz_Nivolumab_2017-p094 SKCM BRAF Skin Skin M1c TRUE IV Complete Response FALSE FALSE TRUE 0 980.9999997 0 NA NA NA 41 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown None NA FALSE FALSE NA NA NA NA NA NA NA NA p094 Riaz_Nivolumab_2017 9 FALSE FALSE 0.93844752 -1.747023347 0.19080291 -1.508361559 -0.590268382 FALSE -0.062516817 0.93844752 0.027476115 0.029468124 0.087443754 -0.680304517 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p098.ar.8853 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088853 ar-8853 p098 p098-Pre NA Riaz_Nivolumab_2017-p098 SKCM TripleWt Skin Ocular/Uveal M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 746.9999999 1 NA NA NA 74 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p098 Riaz_Nivolumab_2017 7 FALSE FALSE 0.665465368 -1.49838326 0.638085082 -0.32066979 -1.492782514 FALSE -1.40527633 0.665465368 0.069821053 -0.092705283 0.112096791 -1.375256758 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p098.ar.8854 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088854 ar-8854 p098 p098-On NA Riaz_Nivolumab_2017-p098 SKCM TripleWt Skin Ocular/Uveal M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 746.9999999 1 NA NA NA 74 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p098 Riaz_Nivolumab_2017 9 FALSE TRUE -1.168063105 0.899651768 0.691121151 1.561869732 0.849705287 TRUE -0.649331932 -1.168063105 -0.070301436 -0.107780326 -7.22e-4 0.925018958 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p101.ar.8834 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088834 ar-8834 p101 p101-Pre NA Riaz_Nivolumab_2017-p101 SKCM TripleWt Skin Skin M1a TRUE IV Partial Response FALSE FALSE TRUE 0 833.9999997 0 NA NA NA 47 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p101 Riaz_Nivolumab_2017 13 FALSE TRUE -3.392805003 1.988180455 0.606275679 1.229224283 2.895129232 TRUE 2.343913982 -3.392805003 -0.168879809 -0.309920827 -0.037340319 2.509313966 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p101.ar.8835 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088835 ar-8835 p101 p101-On NA Riaz_Nivolumab_2017-p101 SKCM TripleWt Skin Skin M1a TRUE IV Partial Response FALSE FALSE TRUE 0 833.9999997 0 NA NA NA 47 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p101 Riaz_Nivolumab_2017 13 FALSE TRUE -3.066432178 2.096946327 0.36870218 1.536331234 2.935169548 TRUE 2.46987603 -3.066432178 -0.176097255 -0.250506711 -0.03494836 2.616307725 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p103.ar.8871 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088871 ar-8871 p103 p103-On NA Riaz_Nivolumab_2017-p103 SKCM TripleWt Skin Skin M1b TRUE IV Progressive Disease TRUE TRUE FALSE 0 484 0 NA NA NA 52 Female Asian FALSE TRUE FALSE FALSE FALSE FALSE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p103 Riaz_Nivolumab_2017 7 TRUE FALSE 1.880187917 -1.462184454 0.464251498 -1.577291935 -1.392935769 FALSE -0.796673018 1.880187917 0.120685186 0.077216091 0.08513168 -1.394691225 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p103.ar.8872 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088872 ar-8872 p103 p103-Pre NA Riaz_Nivolumab_2017-p103 SKCM TripleWt Skin Skin M1b TRUE IV Progressive Disease TRUE TRUE FALSE 0 484 0 NA NA NA 52 Female Asian FALSE TRUE FALSE FALSE FALSE FALSE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p103 Riaz_Nivolumab_2017 9 FALSE TRUE -0.243606728 1.013419055 0.705467533 -0.746876069 1.280838752 TRUE 1.961684764 -0.243606728 -0.103677561 0.038938735 0.034875907 1.589814329 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p105.ar.8844 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088844 ar-8844 NA NA NA Riaz_Nivolumab_2017-p105 SKCM NA Skin NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA NA NA NA NA NA NA p105 Riaz_Nivolumab_2017 11 FALSE FALSE 0.636872603 2.193086308 0.796611291 2.181495753 2.036508227 TRUE 0.636872603 -2.331959855 -0.119753821 -0.121533874 -0.109644692 2.335047996 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p106.ar.8926 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088926 ar-8926 p106 p106-Pre NA Riaz_Nivolumab_2017-p106 SKCM BRAF Skin Mucosal M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 91 1 NA NA NA 53 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p106 Riaz_Nivolumab_2017 7 FALSE FALSE 1.706575815 0.66993754 0.326895839 -1.069973352 0.469105388 TRUE -0.554408078 1.706575815 0.120670601 0.108688776 0.030912534 0.565094251 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p106.ar.8927 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088927 ar-8927 p106 p106-On NA Riaz_Nivolumab_2017-p106 SKCM BRAF Skin Mucosal M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 91 1 NA NA NA 53 Male Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p106 Riaz_Nivolumab_2017 7 FALSE FALSE 1.532944032 0.943720199 0.513211774 -0.397174414 0.184988642 TRUE -0.731251647 1.532944032 0.151527344 0.057031365 0.019026941 0.505469055 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
Riaz_Nivolumab_2017.p108.ar.8845 RNA-Seq RNA NA NA NA TRUE On NA FALSE NA NA NA HiSeq 2000 V3 or HiSeq 2500 NA NA FALSE Fresh RNALater SRR5088845 ar-8845 NA p108-On NA Riaz_Nivolumab_2017-p108 SKCM TripleWt Skin Other M1b TRUE IV Stable Disease TRUE FALSE TRUE 0 912.9999998 0 NA NA NA 37 Female Caucasian TRUE FALSE FALSE FALSE FALSE TRUE Nivo Nivo None PD1 PD1 None None TRUE TRUE FALSE FALSE FALSE FALSE Ipi Ipi TRUE TRUE TRUE NA NA NA NA NA NA NA NA p108 Riaz_Nivolumab_2017 8 FALSE FALSE 0.171659314 -0.310136955 0.9292941 -0.50583249 -0.330883075 FALSE 0.596024191 0.171659314 -0.0381297 0.050441072000000003 0.020143998 0.419797392 Riaz_Nivolumab_2017_Skin 0 0 0 0 0 0 0 0 0 0 1 0 0 ALL
VanAllen_antiCTLA4_2015.p002.ar.689710 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2689710 ar-689710 NA p002 NA VanAllen_antiCTLA4_2015-p002 SKCM NA Skin Occult M1c TRUE IV Stable Disease TRUE FALSE TRUE 0 1632 0 1 538 1 42 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA Unknown Unknown TRUE NA NA NA aBRAF Unknown TRUE NA NA NA NA p002 VanAllen_antiCTLA4_2015 9 FALSE TRUE -1.177005707 -1.190989667 0.066253609 -0.205593382 0.493856413 FALSE 2.826561689 -1.177005707 -0.26695009200000003 0.171622779 -0.056052122 0.501739052 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p004.ar.689711 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2689711 ar-689711 NA p004 NA VanAllen_antiCTLA4_2015-p004 SKCM NA Skin Skin M1b TRUE IV Partial Response FALSE FALSE TRUE 0 987 0 0 646 0 71 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p004 VanAllen_antiCTLA4_2015 8 FALSE FALSE 0.513333564 -1.317908801 0.620664215 -1.049311255 -1.344780502 FALSE 0.949800345 0.513333564 -0.042663347 0.09039108 0.037092855 -1.372619363 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p004.ar.780275 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2780275 ar-780275 NA p004 NA VanAllen_antiCTLA4_2015-p004 SKCM NA Skin Skin M1b TRUE IV Partial Response FALSE FALSE TRUE 0 987 0 0 646 0 71 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p004 VanAllen_antiCTLA4_2015 8 FALSE TRUE -0.246529341 -0.107302921 0.446357037 0.433403382 0.376787204 TRUE -0.246529341 0.639753258 0.129990935 -0.050869825 0.001832819 0.775189204 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p006.ar.774280 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2774280 ar-774280 NA p006 NA VanAllen_antiCTLA4_2015-p006 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 161 1 1 77 1 33 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p006 VanAllen_antiCTLA4_2015 10 FALSE FALSE 2.860100707 0.842940535 0.382992154 1.769716663 1.507773376 TRUE 2.860100707 -2.17280964 -0.209794917 -0.019903301 -0.087510142 1.583549959 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p008.ar.778361 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2778361 ar-778361 NA p008 NA VanAllen_antiCTLA4_2015-p008 SKCM NA Skin Mucosal M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 140 1 1 73 1 73 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p008 VanAllen_antiCTLA4_2015 11 FALSE FALSE 0.17053953 1.241028108 0.501044635 0.902779498 0.391420679 TRUE 0.17053953 -0.401817032 -0.009163608 -0.038911905 -0.023228538 0.66285972 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p014.ar.771207 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2771207 ar-771207 NA p014 NA VanAllen_antiCTLA4_2015-p014 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 163 1 1 84 1 48 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA aBRAF Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p014 VanAllen_antiCTLA4_2015 11 FALSE FALSE 0.843785017 -0.746756649 0.186309644 0.387971309 -0.429250831 FALSE 0.752281434 0.843785017 0.057875021 0.023224785 0.056284939 -0.268306623 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p015.ar.669446 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2669446 ar-669446 NA p015 NA VanAllen_antiCTLA4_2015-p015 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 50 1 1 31 1 32 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA aBRAF Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p015 VanAllen_antiCTLA4_2015 7 TRUE FALSE 1.497381296 -2.274046847 0.330396386 -0.441355759 -2.204118934 FALSE -1.330395574 1.497381296 0.166665775 0.008487475 0.038847336 -1.996980027 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p016.ar.780299 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2780299 ar-780299 NA p016 NA VanAllen_antiCTLA4_2015-p016 SKCM NA Skin Skin M1b TRUE IV Progressive Disease TRUE TRUE FALSE 1 811 1 1 84 1 68 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p016 VanAllen_antiCTLA4_2015 11 FALSE TRUE -0.779366652 0.735538688 0.904833025 0.381477949 0.793445039 FALSE -1.151852003 -0.779366652 0.02725355 -0.166637849 -0.004971877 0.423252621 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p019.ar.774182 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2774182 ar-774182 NA p019 NA VanAllen_antiCTLA4_2015-p019 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 175 1 1 21 1 59 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p019 VanAllen_antiCTLA4_2015 10 FALSE FALSE 1.685941179 0.794882676 0.309986501 -0.077818045 1.105809119 TRUE 1.685941179 -0.221314933 -0.136818594 0.155928552 -0.028086958 1.067377023 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p020.ar.672095 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2672095 ar-672095 NA NA NA VanAllen_antiCTLA4_2015-p020 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 116 1 1 71 1 78 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p020 VanAllen_antiCTLA4_2015 9 FALSE FALSE 0.925490193 -0.261539196 0.575147963 -0.405483105 0.092650195 FALSE -1.686640102 0.925490193 0.109880792 -0.021169543 0.044542119 -0.171110703 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p025.ar.755094 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2755094 ar-755094 NA p025 NA VanAllen_antiCTLA4_2015-p025 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 325 1 1 67 1 69 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p025 VanAllen_antiCTLA4_2015 9 FALSE TRUE -0.945108818 -0.623386669 0.265416908 0.849961494 -0.122554656 FALSE -0.035115913 -0.945108818 -0.018879026 -0.130195443 -0.004262037 -0.443690218 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p027.ar.771617 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2771617 ar-771617 NA p027 NA VanAllen_antiCTLA4_2015-p027 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 0 1379 0 1 139 1 61 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA Unknown Unknown TRUE NA NA NA aBRAF Unknown TRUE NA NA NA NA p027 VanAllen_antiCTLA4_2015 7 FALSE TRUE -0.084300978 -0.275052569 0.390967001 0.064897197 -0.545573269 FALSE 0.45410826 -0.084300978 -0.139030678 0.133362483 0.006581076 -0.4677938 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p028.ar.660032 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2660032 ar-660032 NA p028 NA VanAllen_antiCTLA4_2015-p028 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 1184 1 1 77 1 77 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p028 VanAllen_antiCTLA4_2015 11 FALSE FALSE 0.006032798 2.659439933 0.863464164 1.663851041 1.925743779 TRUE 0.006032798 -2.01344557 0.006758003 -0.204112486 -0.127650974 1.92139353 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p029.ar.681702 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2681702 ar-681702 NA p029 NA VanAllen_antiCTLA4_2015-p029 SKCM NA Skin Skin M1c TRUE IV NA NA NA NA 0 1326 0 1 341 1 82 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p029 VanAllen_antiCTLA4_2015 11 FALSE TRUE -0.825083553 0.009858638 0.612243018 0.026176929 -0.804612206 FALSE 1.185265069 -0.825083553 -0.008555674 -0.140208184 0.024224863 0.043190461 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p033.ar.779097 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2779097 ar-779097 NA p033 NA VanAllen_antiCTLA4_2015-p033 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 211 1 1 211 1 65 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p033 VanAllen_antiCTLA4_2015 10 FALSE FALSE 0.599272519 -1.484481155 0.624666619 0.00543599 -1.760102441 FALSE -1.052532738 0.599272519 0.094530994 -0.026113744 0.007182803 -1.676423199 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p036.ar.777976 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2777976 ar-777976 NA p036 NA VanAllen_antiCTLA4_2015-p036 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 54 1 1 41 1 52 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA aBRAF Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p036 VanAllen_antiCTLA4_2015 9 TRUE FALSE 2.146694139 -1.149494903 0.207192198 -1.346273344 -2.24690985 FALSE -1.522767727 2.146694139 0.208980267 0.066612737 0.036586168 -1.866194093 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p037.ar.778466 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2778466 ar-778466 NA p037 NA VanAllen_antiCTLA4_2015-p037 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 70 1 1 23 1 47 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p037 VanAllen_antiCTLA4_2015 10 FALSE FALSE 1.385990677 0.216673286 0.69769057 -0.579910548 0.063406442 FALSE -1.044822133 1.385990677 0.202146845 -0.012195876 0.012378075 0.127172318 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p038.ar.778056 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2778056 ar-778056 NA p038 NA VanAllen_antiCTLA4_2015-p038 SKCM NA Skin Skin M1c TRUE IV Partial Response FALSE FALSE TRUE 0 1539 0 1 302 1 45 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA Unknown Unknown TRUE NA NA NA aBRAF Unknown TRUE NA NA NA NA p038 VanAllen_antiCTLA4_2015 11 FALSE FALSE 1.291536842 1.794479022 0.624149668 1.809610421 2.285901914 TRUE 1.291536842 -1.654270131 -0.119889103 -0.063904995 -0.063965604 2.519786226 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p039.ar.665516 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2665516 ar-665516 NA p039 NA VanAllen_antiCTLA4_2015-p039 SKCM NA Skin Skin M1b TRUE IV Complete Response FALSE FALSE TRUE 0 1487 0 0 1487 0 67 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p039 VanAllen_antiCTLA4_2015 10 FALSE TRUE -0.439564801 -0.385767588 0.45100119 -2.268084867 0.172392501 FALSE 1.372920975 -0.439564801 -0.181578073 0.110878245 0.026055783 0.460225184 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p040.ar.751521 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2751521 ar-751521 NA p040 NA VanAllen_antiCTLA4_2015-p040 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 34 1 1 34 1 74 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p040 VanAllen_antiCTLA4_2015 9 FALSE FALSE 1.384553851 -0.609618119 0.361095107 0.581545702 -0.832533855 FALSE -0.420245268 1.384553851 0.051702293 0.157851468 -0.001971755 -0.605640326 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p041.ar.083584 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR3083584 ar-083584 NA p041 NA VanAllen_antiCTLA4_2015-p041 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 128 1 1 54 1 64 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p041 VanAllen_antiCTLA4_2015 8 FALSE FALSE 0.686887581 -1.849208654 0.114994693 -2.354573049 -0.781905273 FALSE -0.096968447 0.686887581 0.041029827 0.036697565 0.023176879 -1.711187364 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p043.ar.771286 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2771286 ar-771286 NA p043 NA VanAllen_antiCTLA4_2015-p043 SKCM NA Skin Skin M1b TRUE IV Progressive Disease TRUE TRUE FALSE 1 37 1 1 37 1 75 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p043 VanAllen_antiCTLA4_2015 10 FALSE FALSE 1.538022319 1.320090637 0.464788932 0.546669701 2.056003559 TRUE 1.538022319 -0.309246702 -0.197198262 0.21658953 -0.0350876 1.883119979 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p044.ar.780123 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2780123 ar-780123 NA p044 NA VanAllen_antiCTLA4_2015-p044 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 271 1 1 62 1 57 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p044 VanAllen_antiCTLA4_2015 8 TRUE FALSE 1.534771069 -2.344580012 0.818071475 -0.427201505 -2.348717532 FALSE -1.573357379 1.534771069 0.156838943 -0.034025281 0.100294684 -2.083378349 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p045.ar.777065 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2777065 ar-777065 NA p045 NA VanAllen_antiCTLA4_2015-p045 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 89 1 1 61 1 68 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p045 VanAllen_antiCTLA4_2015 8 TRUE FALSE 1.665937755 -2.467418987 0.324662827 -1.093040631 -2.378156453 FALSE -1.429439076 1.665937755 0.170879778 0.008670987 0.058704732 -2.112334729 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p046.ar.777217 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2777217 ar-777217 NA p046 NA VanAllen_antiCTLA4_2015-p046 SKCM NA Skin Occult M1b TRUE IV Progressive Disease TRUE TRUE FALSE 1 160 1 1 36 1 36 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p046 VanAllen_antiCTLA4_2015 9 FALSE FALSE 0.942583849 -0.365556724 0.140743499 -0.279787814 -1.312111622 FALSE 0.313535946 0.942583849 0.048016124 0.08544624 0.015687554 -1.267177733 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p047.ar.771707 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2771707 ar-771707 NA p047 NA VanAllen_antiCTLA4_2015-p047 SKCM NA Skin Skin M1c TRUE IV Complete Response FALSE FALSE TRUE 0 1106 0 0 1106 0 78 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p047 VanAllen_antiCTLA4_2015 9 FALSE FALSE 0.418604818 -0.521222477 0.619650444 0.149320834 -1.588908295 FALSE -0.422949087 0.418604818 0.058364534 0.051288882 -0.053509503 -1.361423439 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p049.ar.778078 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2778078 ar-778078 NA p049 NA VanAllen_antiCTLA4_2015-p049 SKCM NA Skin Skin M1c TRUE IV Stable Disease TRUE FALSE TRUE 0 1034 0 1 163 1 36 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA None None FALSE FALSE FALSE FALSE aBRAF Unknown TRUE NA NA NA NA p049 VanAllen_antiCTLA4_2015 10 FALSE FALSE 1.790293163 2.237973475 0.736457975 1.623792564 3.283335013 TRUE 1.790293163 -3.029270007 -0.177734013 -0.19583139 -0.090307888 3.012270015 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p050.ar.700736 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2700736 ar-700736 NA p050 NA VanAllen_antiCTLA4_2015-p050 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 65 1 1 65 1 77 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p050 VanAllen_antiCTLA4_2015 8 FALSE FALSE 0.120709771 -0.346732774 0.68196725 -1.122286844 -0.554473008 FALSE -1.008003657 0.120709771 0.025421536 -0.067061572 0.0510384 -0.382859233 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p079.ar.753064 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2753064 ar-753064 NA p079 NA VanAllen_antiCTLA4_2015-p079 SKCM NA Skin Skin M1b TRUE IV Partial Response FALSE FALSE TRUE 1 801 1 1 405 1 69 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p079 VanAllen_antiCTLA4_2015 9 FALSE FALSE 0.726472919 -0.522345021 0.573094734 -0.947620097 -0.417508965 FALSE -0.749487524 0.726472919 0.072465595 0.006721179 0.030795407 -0.237203735 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p080.ar.674135 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2674135 ar-674135 NA p080 NA VanAllen_antiCTLA4_2015-p080 SKCM NA Skin Skin M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 724 1 1 182 1 48 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA Unknown Unknown TRUE NA NA NA aBRAF Unknown TRUE NA NA NA NA p080 VanAllen_antiCTLA4_2015 12 FALSE TRUE -0.07007754 0.714166149 0.520130045 0.470039649 0.368534159 TRUE -0.07007754 -0.077997113 0.022481705 0.012235622 -0.034152238 0.472337818 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p081.ar.661579 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2661579 ar-661579 NA p081 NA VanAllen_antiCTLA4_2015-p081 SKCM NA Skin Mucosal M1a TRUE IV Progressive Disease TRUE TRUE FALSE 1 628 1 1 76 1 54 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p081 VanAllen_antiCTLA4_2015 7 TRUE FALSE 1.148769124 -1.355028219 0.235751937 -0.328332769 -1.967804027 FALSE -0.275444749 1.148769124 0.019287465 0.134177803 0.018505921 -1.617033734 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p083.ar.778609 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2778609 ar-778609 NA p083 NA VanAllen_antiCTLA4_2015-p083 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 0 1027 0 1 107 1 22 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p083 VanAllen_antiCTLA4_2015 11 FALSE TRUE -1.320512678 0.713239009 0.774805709 0.487120233 1.954947964 FALSE 0.179026098 -1.320512678 -0.141789991 -0.054250981 0.003071704 1.248125629 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p085.ar.779183 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2779183 ar-779183 NA p085 NA VanAllen_antiCTLA4_2015-p085 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 458 1 1 83 1 83 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p085 VanAllen_antiCTLA4_2015 11 FALSE FALSE 2.746637461 2.439650976 0.538638664 2.366951071 3.487608375 TRUE 2.746637461 -2.475002568 -0.183941739 -0.034961706 -0.143918013 2.785875548 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p086.ar.775133 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2775133 ar-775133 NA p086 NA VanAllen_antiCTLA4_2015-p086 SKCM NA Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 293 1 1 153 1 55 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA None None FALSE FALSE FALSE FALSE aBRAF Unknown TRUE NA NA NA NA p086 VanAllen_antiCTLA4_2015 10 FALSE FALSE 0.620220323 -0.410261878 0.516908347 -0.368614628 -0.605060155 FALSE -0.523430853 0.620220323 0.067007249 -0.018025386 0.043998478 -0.71872583 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p088.ar.712420 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2712420 ar-712420 NA p088 NA VanAllen_antiCTLA4_2015-p088 SKCM NA Skin Skin M1c TRUE IV Stable Disease TRUE FALSE TRUE 0 989 0 0 665 0 60 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p088 VanAllen_antiCTLA4_2015 11 FALSE FALSE 0.534181269 2.827092483 0.76342359 2.236646598 2.894668251 TRUE 0.534181269 -2.678983236 -0.071045768 -0.238266277 -0.104490011 2.565743056 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p090.ar.757338 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2757338 ar-757338 NA p090 NA VanAllen_antiCTLA4_2015-p090 SKCM NA Skin Skin M1c TRUE IV Partial Response FALSE FALSE TRUE 0 1005 0 0 669 0 59 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p090 VanAllen_antiCTLA4_2015 12 FALSE FALSE 0.462751089 0.104811474 0.540050489 -0.156983329 -0.228159963 FALSE -0.540986644 0.462751089 0.085157399 -0.058898197 0.048419268 -0.230953417 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p091.ar.701663 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2701663 ar-701663 NA NA NA VanAllen_antiCTLA4_2015-p091 SKCM NA Skin Skin M1a TRUE IV Stable Disease TRUE FALSE TRUE 1 680 1 0 680 0 81 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p091 VanAllen_antiCTLA4_2015 11 FALSE FALSE 0.258430066 0.709500784 0.324793001 -0.006655479 -0.025468739 FALSE 0.67588352 0.258430066 0.01565228 0.042526659 -0.010524288 0.027615012 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p098.ar.083781 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR3083781 ar-083781 NA p098 NA VanAllen_antiCTLA4_2015-p098 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 140 1 1 77 1 57 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p098 VanAllen_antiCTLA4_2015 10 FALSE TRUE -0.440577095 0.182324519 0.546954829 0.65046659 0.202837719 FALSE -0.633019524 -0.440577095 0.019933526 -0.02660531 -0.065040576 -0.137186226 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p118.ar.772780 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2772780 ar-772780 NA p118 NA VanAllen_antiCTLA4_2015-p118 SKCM NA Skin Skin M1c TRUE IV Progressive Disease TRUE TRUE FALSE 1 313 1 1 120 1 43 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 aBRAF Unknown TRUE NA TRUE NA TRUE NA aBRAF Unknown TRUE NA NA NA aBRAF Unknown TRUE NA NA NA NA p118 VanAllen_antiCTLA4_2015 10 FALSE FALSE 0.086995954 0.863643723 0.292189634 -1.115619706 0.683435393 FALSE -0.056677975 0.086995954 -0.108002141 0.114023071 0.025294726 0.799723384 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p119.ar.770872 RNA-Seq RNA Unknown Unknown FALSE FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2770872 ar-770872 NA p119 NA VanAllen_antiCTLA4_2015-p119 SKCM NA Skin Skin M0 FALSE III Progressive Disease TRUE TRUE FALSE 0 808 0 1 108 1 61 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p119 VanAllen_antiCTLA4_2015 12 FALSE FALSE 0.024250545 -0.004585925 0.710524044 -0.457853392 -0.64952972 FALSE -2.112926023 0.024250545 0.025189286 -0.07856899 0.044182447 -0.70878272 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p123.ar.779596 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2779596 ar-779596 NA p123 NA VanAllen_antiCTLA4_2015-p123 SKCM NA Skin Occult M1c TRUE IV Stable Disease TRUE FALSE TRUE 1 853 1 1 544 1 50 Female NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p123 VanAllen_antiCTLA4_2015 12 FALSE FALSE 0.170182341 -0.338831621 0.746951895 -1.524620929 -0.681008692 FALSE -1.627551642 0.170182341 0.067616494 -0.102885368 0.050327276 -1.093724657 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
VanAllen_antiCTLA4_2015.p126.ar.675767 RNA-Seq RNA Unknown Unknown NA FALSE Pre Unknown FALSE NA 76 NA HiSeq 2500 NA TruSeq Stranded Total RNA Sample Prep Kit; Qiagen AllPrep DNA/RNA Mini Kit (51306); CitriSolv TRUE FFPE NA SRR2675767 ar-675767 NA p126 NA VanAllen_antiCTLA4_2015-p126 SKCM NA Skin Skin M1b TRUE IV Partial Response FALSE FALSE TRUE 0 641 0 1 187 1 77 Male NA NA NA NA NA NA TRUE Ipi Unknown Ipi CTLA4 CTLA4 Unknown Unknown TRUE NA TRUE NA NA NA Unknown Unknown TRUE NA NA NA Unknown Unknown NA NA NA NA NA p126 VanAllen_antiCTLA4_2015 12 FALSE FALSE 0.319892008 0.54478326 0.747195392 -0.85081434 -0.311308104 FALSE -1.243952466 0.319892008 0.017985178 0.009318771 0.025095623 -0.349816222 VanAllen_antiCTLA4_2015_Skin 0 0 0 0 0 0 0 0 0 0 0 1 0 ALL
Choueiri_CCR_2016.p014.ar.325 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468325 ar-325 NA p014 Broad Institute Choueiri_CCR_2016-p014 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 1025 0 1 541 1 59 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p014 Choueiri_CCR_2016 11 FALSE FALSE 1.350823559 0.981807499 0.443522036 -0.065699001 1.129797185 TRUE 1.350823559 -3.548574661 -0.189334393 -0.247290974 -0.112284015 1.257778384 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p018.ar.318 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468318 ar-318 NA p018 Broad Institute Choueiri_CCR_2016-p018 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 111 0 1 43 1 68 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p018 Choueiri_CCR_2016 8 FALSE TRUE -0.220774658 -1.777622193 0.58118474 -0.880863671 -1.623455267 FALSE -0.261345455 -0.220774658 -0.036166083 -0.042189072 0.047913723 -1.596911362 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p021.ar.301 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468301 ar-301 NA p021 Broad Institute Choueiri_CCR_2016-p021 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 349 0 0 43 0 64 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p021 Choueiri_CCR_2016 9 FALSE FALSE 1.194713577 0.336587818 0.204795866 0.995732459 -1.139466144 FALSE -0.229857839 1.194713577 0.111122129 0.176403325 -0.102556399 -0.851356664 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p027.ar.866 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR7526866 ar-866 NA p027 Broad Institute Choueiri_CCR_2016-p027 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 968 0 1 35 1 59 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p027 Choueiri_CCR_2016 7 FALSE FALSE 1.922509944 -0.506968881 0.234551599 0.34805577 -1.865949017 FALSE -0.578095088 1.922509944 0.033031565 0.263381125 0.011398638000000001 -1.353427844 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p041.ar.306 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468306 ar-306 NA p041 Broad Institute Choueiri_CCR_2016-p041 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 195 0 1 42 1 66 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p041 Choueiri_CCR_2016 9 FALSE FALSE 0.193314444 1.953116859 0.622335724 0.509478673 3.005086668 TRUE 0.193314444 -2.778748153 -0.195182843 -0.168722504 -0.058413405 2.143355433 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p050.ar.551 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6511551 ar-551 NA p050 Broad Institute Choueiri_CCR_2016-p050 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 982 0 1 86 1 63 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p050 Choueiri_CCR_2016 9 FALSE FALSE 1.435703526 1.844325509 0.439886344 0.24776508 3.429751236 TRUE 1.435703526 -0.182823271 0.014958414 -0.029897618 -0.019108024 2.841507047 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p073.ar.324 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468324 ar-324 NA p073 Broad Institute Choueiri_CCR_2016-p073 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 178 1 1 58 1 77 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p073 Choueiri_CCR_2016 6 TRUE FALSE 2.576694487 -1.781505039 0.497376239 -1.324674049 -2.251340572 FALSE -0.266519029 2.576694487 0.151689447 0.159487591 0.079871146 -1.946931105 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p090.ar.331 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468331 ar-331 NA p090 Broad Institute Choueiri_CCR_2016-p090 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 499 1 1 36 1 54 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p090 Choueiri_CCR_2016 8 FALSE TRUE -0.733204743 0.312374952 0.971584361 1.057491292 -0.492310663 FALSE -1.223131816 -0.733204743 0.015922509 -0.169300878 0.019709699 -0.015655115 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p093.ar.345 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468345 ar-345 NA p093 Broad Institute Choueiri_CCR_2016-p093 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 684 1 1 500 1 64 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p093 Choueiri_CCR_2016 8 FALSE FALSE 0.442651108 1.407807658 0.19614736 0.865990353 0.758302285 TRUE 0.442651108 -0.278862544 -0.087395059 0.131440651 -0.067790656 0.567506495 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p096.ar.333 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468333 ar-333 NA p096 Broad Institute Choueiri_CCR_2016-p096 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 582 0 1 37 1 75 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p096 Choueiri_CCR_2016 7 FALSE FALSE 1.735914769 -0.880836353 0.384518179 0.872638181 -0.358538476 FALSE -0.171348998 1.735914769 0.064661132 0.176821696 0.032848175 -0.797907106 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p099.ar.320 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468320 ar-320 NA p099 Broad Institute Choueiri_CCR_2016-p099 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 41 1 1 41 1 50 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p099 Choueiri_CCR_2016 9 FALSE TRUE -1.266326417 0.117133372 0.893044207 -0.080748164 -0.850888462 FALSE -0.795078704 -1.266326417 0.059197488 -0.236476291 -0.036007467 0.223614444 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p102.ar.841 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR7526841 ar-841 NA p102 Broad Institute Choueiri_CCR_2016-p102 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 165 0 1 108 1 64 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p102 Choueiri_CCR_2016 8 FALSE FALSE 0.896078674 -0.89757987 0.432028044 -0.909474343 0.497865854 FALSE 1.30284322 0.896078674 0.044578964 0.032468004 0.058086077 0.62383491 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p105.ar.265 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468265 ar-265 NA p105 Broad Institute Choueiri_CCR_2016-p105 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 118 1 1 45 1 64 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p105 Choueiri_CCR_2016 7 TRUE FALSE 1.252064104 -1.770715202 0.480656413 -1.143176136 -1.958453469 FALSE -0.669916047 1.252064104 0.085189073 0.074624837 0.032427662 -1.96005319 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p106.ar.300 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468300 ar-300 NA p106 Broad Institute Choueiri_CCR_2016-p106 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 870 0 0 821 0 61 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p106 Choueiri_CCR_2016 8 FALSE FALSE 1.147689319 -0.749609993 0.3154347 -0.159594836 -0.323439355 FALSE -0.087056062 1.147689319 -0.040759014 0.203167606 0.031745544 -0.366121634 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p115.ar.329 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2000 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468329 ar-329 NA p115 Broad Institute Choueiri_CCR_2016-p115 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 366 0 1 87 1 60 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p115 Choueiri_CCR_2016 9 FALSE FALSE 0.667120476 -0.199039709 0.203249653 -0.361895443 -0.630645627 FALSE -0.804451777 0.667120476 0.003980316 0.064556085 0.038350819 -0.823138979 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
Choueiri_CCR_2016.p117.ar.327 RNA-Seq RNA NA NA TRUE TRUE Pre Metastatic Tumor FALSE FALSE NA NA HiSeq 2500 NA Qiagen AllPrep DNA/RNA Mini Kit NA NA NA SRR6468327 ar-327 NA p117 Broad Institute Choueiri_CCR_2016-p117 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 64 0 0 38 0 58 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p117 Choueiri_CCR_2016 11 FALSE FALSE 1.384541931 1.610723571 0.712989011 0.028973835 2.673683823 TRUE 1.384541931 -1.953628228 -0.080267598 -0.206655252 -0.014646552 2.053906286 Choueiri_CCR_2016_Kidney 0 1 0 0 0 0 0 0 0 0 0 0 0 ALL
IMmotion150.p00064.ar.ea364 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_ea364390ab1f ar-ea364 NA p00064 NA IMmotion150-p00064 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 36 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p00064 IMmotion150 9 TRUE FALSE 2.629079878 -1.571874511 0.15923239 -1.835532954 -1.652553386 FALSE -0.621687223 2.629079878 0.143811748 0.202152307 0.048724395 -1.533546586 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p01155.ar.28f34 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_28f34e48ae95 ar-28f34 NA p01155 NA IMmotion150-p01155 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 81 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p01155 IMmotion150 10 FALSE FALSE 0.846923934 -0.775459142 0.74135399 0.540317463 -0.949011253 FALSE -0.932481331 0.846923934 -0.003503637 0.130918586 0.006787243 -0.974607312 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p01316.ar.e5482 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e548270872d3 ar-e5482 NA NA NA IMmotion150-p01316 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 115 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p01316 IMmotion150 11 FALSE FALSE 0.180544243 0.003187603 0.653671633 -0.082939975 0.056715098 FALSE -1.35812893 0.180544243 0.080097848 -0.007414422 -0.053403702 -0.241621107 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p01492.ar.b5c6d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_b5c6dbc0eb38 ar-b5c6d NA p01492 NA IMmotion150-p01492 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p01492 IMmotion150 9 TRUE FALSE 1.762996865 -1.289471291 0.372970265 -1.29278244 -1.366679552 FALSE -0.958191839 1.762996865 0.010267801 0.258280062 0.009711531 -1.442322212 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p03058.ar.c2dad RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c2daddf72d4e ar-c2dad NA NA NA IMmotion150-p03058 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 248 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p03058 IMmotion150 10 FALSE TRUE -0.193382035 0.325473756 0.827563954 0.954756023 0.530486763 TRUE -0.193382035 -0.791275914 -0.068123063 -0.042931981 -0.012001435 0.696928731 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p03170.ar.b28cd RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_b28cd415a1ba ar-b28cd NA NA NA IMmotion150-p03170 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 163 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p03170 IMmotion150 10 FALSE FALSE 0.605738545 -0.263837979 0.503091443 -0.704619431 0.045032619 FALSE -0.337909722 0.605738545 0.038051242 0.062634403 -0.005058312 0.354988113 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p03363.ar.a74ac RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a74ac0179106 ar-a74ac NA NA NA IMmotion150-p03363 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p03363 IMmotion150 7 FALSE FALSE 2.410845147 -0.878515334 0.270937918 -1.374016836 -0.850729232 FALSE 0.158481448 2.410845147 0.101666468 0.227675257 0.046319061 -0.317111059 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p03418.ar.d867a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d867a47b6edc ar-d867a NA NA NA IMmotion150-p03418 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 159 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p03418 IMmotion150 8 FALSE TRUE -0.417553152 -0.135750777 0.347082219 -0.871090985 -0.526529608 FALSE 0.24614854 -0.417553152 -0.042387917 -0.006239323 -0.009697042 -0.542970295 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p03665.ar.04d83 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_04d83340b8bd ar-04d83 NA p03665 NA IMmotion150-p03665 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 657.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p03665 IMmotion150 10 FALSE FALSE 1.024345095 0.980720422 0.320637675 0.94312377 1.1364772 TRUE 1.024345095 0.598604617 -0.019598605 0.180382141 -0.050679926 1.156101415 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p04168.ar.9925b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_9925b94e6985 ar-9925b NA NA NA IMmotion150-p04168 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p04168 IMmotion150 12 FALSE TRUE -0.113655757 -0.124394428 0.371655814 0.975481549 -0.952851882 FALSE -1.932167016 -0.113655757 0.07183187 -0.092561602 -0.004218021 -1.114213285 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p04878.ar.a7863 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a78634cf0f16 ar-a7863 NA NA NA IMmotion150-p04878 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 82.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p04878 IMmotion150 10 FALSE FALSE 1.746477531 -0.366591012 0.313054962 -1.230586694 -0.122094369 FALSE 0.62482996 1.746477531 0.08063972 0.202711329 -0.006518186 -0.315787828 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p05096.ar.a365c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a365c8bc5629 ar-a365c NA NA NA IMmotion150-p05096 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 329.0000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p05096 IMmotion150 10 FALSE TRUE -0.234183818 -0.593654057 0.609326431 -0.153547802 0.29267221 FALSE 0.33124615 -0.234183818 0.005755299 -0.052664478 0.012226517 -4.44e-4 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p05361.ar.cd767 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_cd767cf6af18 ar-cd767 NA p05361 NA IMmotion150-p05361 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 87.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p05361 IMmotion150 11 FALSE FALSE 1.32855094 -0.745031754 0.418025188 -0.937897786 -1.383771208 FALSE -0.366881498 1.32855094 0.099629367 0.081460456 0.024588509 -1.057236649 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p05370.ar.27be5 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_27be5396da2c ar-27be5 NA NA NA IMmotion150-p05370 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 175 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p05370 IMmotion150 10 FALSE FALSE 0.986188769 0.739267626 0.541864809 -1.03933671 0.204970275 FALSE -0.119409938 0.986188769 0.058149073 0.045549944 0.046601809 0.194228019 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p05544.ar.43b75 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_43b757f285d8 ar-43b75 NA p05544 NA IMmotion150-p05544 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 605.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p05544 IMmotion150 11 FALSE TRUE -0.379091644 0.572085616 0.897512546 -0.268495636 0.958821815 TRUE -0.379091644 -1.487621313 -0.04730096 -0.204540514 0.00360982 0.739756734 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p05746.ar.0ce2a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_0ce2a849a095 ar-0ce2a NA p05746 NA IMmotion150-p05746 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 47 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p05746 IMmotion150 12 FALSE FALSE 0.92050802 0.849034897 0.432784521 0.606631828 0.818359513 FALSE -0.176462454 0.92050802 0.094641105 0.026980687 0.015252583 0.489267805 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p06184.ar.828f7 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_828f7228cd71 ar-828f7 NA NA NA IMmotion150-p06184 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 82.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p06184 IMmotion150 8 FALSE FALSE 1.348798158 -0.969891847 0.540079761 -1.622542811 -1.215905142 FALSE -0.428143907 1.348798158 0.084206489 0.07053696 0.0487217 -1.28452301 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p07076.ar.d1382 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d13825c3dfc3 ar-d1382 NA p07076 NA IMmotion150-p07076 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 594 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p07076 IMmotion150 9 FALSE FALSE 0.083891976 -0.854798222 0.534113999 -0.690694415 0.390202452 FALSE -0.70081317 0.083891976 0.035694775 -0.070375295 0.036328712 0.096294531 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p07343.ar.2bb4a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_2bb4a8c04b08 ar-2bb4a NA p07343 NA IMmotion150-p07343 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 253 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p07343 IMmotion150 11 FALSE TRUE -0.253633312 0.123147172 0.461176245 0.169483788 0.947643883 FALSE -0.347320554 -0.253633312 0.007705561 -0.048595256 0.001310194 0.485999958 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p07499.ar.6cca2 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_6cca25af0207 ar-6cca2 NA p07499 NA IMmotion150-p07499 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 425.9999999 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p07499 IMmotion150 9 FALSE FALSE 0.477579841 -0.203883258 0.270876066 -0.789696422 0.063578825 FALSE -0.540780605 0.477579841 0.060131852 -0.023275698 0.037800901 0.006754776 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p07850.ar.50704 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_507047e3fbbc ar-50704 NA p07850 NA IMmotion150-p07850 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 167 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p07850 IMmotion150 11 FALSE FALSE 1.466821775 1.858030715 0.411726595 1.156296696 1.764183117 TRUE 1.466821775 -1.462598429 -0.146773124 -0.00685733 -0.060603703 1.689048281 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p08100.ar.c4519 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c4519f8209ec ar-c4519 NA NA NA IMmotion150-p08100 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 589.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p08100 IMmotion150 11 FALSE TRUE -0.414606491 1.210762164 0.934697017 1.265862209 1.492496702 TRUE -0.414606491 -0.494674304 0.038537709 -0.100477092 -0.025631647 0.895862584 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p09050.ar.32c34 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_32c3436be919 ar-32c34 NA p09050 NA IMmotion150-p09050 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 91.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p09050 IMmotion150 13 FALSE TRUE -0.519695859 -0.007166563 0.44081993 2.048557392 0.157181966 FALSE 0.596822052 -0.519695859 0.005306535 -0.083253438 -0.001316578 0.322102867 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p09186.ar.5e55f RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_5e55fe2dba33 ar-5e55f NA p09186 NA IMmotion150-p09186 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 173 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p09186 IMmotion150 11 TRUE FALSE 1.170740645 -1.789958128 0.136041001 -0.858071693 -1.622455852 FALSE -0.506608093 1.170740645 0.0833719 0.047600237 0.040232092 -1.638628051 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p09246.ar.bc94b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_bc94baf36996 ar-bc94b NA p09246 NA IMmotion150-p09246 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 391.9999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p09246 IMmotion150 10 FALSE TRUE -0.856296199 0.744288376 0.654462454 0.291488042 0.745583025 FALSE 1.246627224 -0.856296199 -0.038301058 -0.038143009 -0.050420798 0.460956603 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p09644.ar.73874 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_738744f4e140 ar-73874 NA NA NA IMmotion150-p09644 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 343 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p09644 IMmotion150 10 FALSE TRUE -2.313382654 1.085243323 0.770092395 0.09128676 2.811478904 FALSE 0.35583433 -2.313382654 -0.107648509 -0.208504792 -0.045817943 1.818196397 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p09862.ar.3ec4d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3ec4d3fc8bd1 ar-3ec4d NA NA NA IMmotion150-p09862 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 507 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p09862 IMmotion150 10 FALSE FALSE 0.986781368 0.930539108 0.371934925 -0.059136475 0.834727025 FALSE 0.313646161 0.986781368 0.004616516 0.1435635 0.015288799 0.388810806 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p10447.ar.3c1db RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3c1db5dd1727 ar-3c1db NA p10447 NA IMmotion150-p10447 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p10447 IMmotion150 9 TRUE FALSE 1.015684162 -1.283281672 0.647008829 0.288642525 -1.088792133 FALSE -0.529727019 1.015684162 0.054986811 0.049643157 0.04669218 -0.683318761 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p10511.ar.acb8d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_acb8dec0a23e ar-acb8d NA p10511 NA IMmotion150-p10511 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 113 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p10511 IMmotion150 11 FALSE FALSE 1.28329984 1.432654031 0.460752539 0.364613443 2.310288447 TRUE 1.28329984 -0.498362007 0.013915821 -0.014098629 -0.088358301 1.890654376 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p10717.ar.0e5a9 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_0e5a923dd081 ar-0e5a9 NA p10717 NA IMmotion150-p10717 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 616 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p10717 IMmotion150 10 FALSE FALSE 0.456247549 -0.119838933 0.791763592 0.716120441 -0.744154099 FALSE -0.988967303 0.456247549 0.024696002 0.032575079 0.007042467 -0.334924071 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p11316.ar.e45c7 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e45c7c4a6649 ar-e45c7 NA NA NA IMmotion150-p11316 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 161 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p11316 IMmotion150 11 FALSE FALSE 0.948024968 0.948648262 0.357137883 0.74558823 0.915786864 TRUE 0.948024968 -0.343900371 -0.118713747 0.062947796 0.02080586 0.894310267 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p12053.ar.48bda RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_48bda2ce65bb ar-48bda NA p12053 NA IMmotion150-p12053 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 418.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p12053 IMmotion150 11 FALSE FALSE 0.582930897 -0.684480911 0.233677346 -1.610907657 -1.027418509 FALSE -0.541309837 0.582930897 0.007006386 0.069551831 0.011354629 -1.131434036 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p12281.ar.43e99 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_43e99ec85c4a ar-43e99 NA NA NA IMmotion150-p12281 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 112 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p12281 IMmotion150 11 FALSE TRUE -1.237736563 -0.243902806 0.38615909 -0.329342957 0.593291975 FALSE -0.283641837 -1.237736563 -0.043730631 -0.129740314 -0.029737608 -0.135151034 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p12735.ar.9f773 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_9f7738c91719 ar-9f773 NA p12735 NA IMmotion150-p12735 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 590.9999999 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p12735 IMmotion150 9 FALSE FALSE 1.045701911 0.867025066 0.237148162 -0.24678473 0.273188037 FALSE -0.256604775 1.045701911 0.116490352 0.091168193 -0.042271013 0.354256459 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p12746.ar.430d5 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_430d558e6c28 ar-430d5 NA p12746 NA IMmotion150-p12746 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 255 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p12746 IMmotion150 11 FALSE FALSE 1.068189866 1.422876825 0.601814813 1.101615475 2.527016983 TRUE 1.068189866 -2.018251842 -0.075408443 -0.181818753 -0.059160863 1.976867139 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p13588.ar.5af67 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_5af67bc99db1 ar-5af67 NA NA NA IMmotion150-p13588 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 690.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p13588 IMmotion150 8 FALSE FALSE 0.807619165 0.30290092 0.11060286 -0.122434313 -0.743330702 FALSE 0.871161199 0.807619165 -0.062308775 0.212500951 -0.003878107 -0.695118426 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p14021.ar.bd686 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_bd6869eb5514 ar-bd686 NA p14021 NA IMmotion150-p14021 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 0 248 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p14021 IMmotion150 10 FALSE FALSE 1.311708139 -0.930767956 0.412146664 -0.992654562 -2.209120475 FALSE -0.942798651 1.311708139 -0.006417836 0.181283591 0.032922388 -2.134755978 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p14145.ar.3d65e RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3d65e4f83386 ar-3d65e NA p14145 NA IMmotion150-p14145 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 89.00000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p14145 IMmotion150 9 TRUE FALSE 1.579449985 -1.219466644 0.529951595 -1.204519447 -1.383625187 FALSE -0.829575767 1.579449985 0.087685716 0.081521707 0.060392402 -0.883257562 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p14153.ar.71492 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_714928e4996a ar-71492 NA p14153 NA IMmotion150-p14153 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 169 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p14153 IMmotion150 10 FALSE TRUE -0.790804535 0.341120764 0.830294131 -0.262440943 -1.548083817 FALSE -0.077555095 -0.790804535 -0.037851263 -0.125540463 0.030787892 -0.612466609 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p14538.ar.1e0a2 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_1e0a2bee3235 ar-1e0a2 NA p14538 NA IMmotion150-p14538 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 85 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p14538 IMmotion150 8 FALSE FALSE 1.570506415 0.307469859 0.682488454 -0.469253252 -1.33980083 FALSE -1.098031519 1.570506415 0.117789382 0.100008174 0.01988626 -1.11692234 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p14593.ar.9020f RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_9020f0fdda23 ar-9020f NA NA NA IMmotion150-p14593 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 589.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p14593 IMmotion150 11 FALSE FALSE 0.404968747 1.230007514 0.375630972 1.616356756 -0.408920368 FALSE -0.129593733 0.404968747 0.020159186 0.133484475 -0.085613874 0.392491453 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p14998.ar.dc07b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_dc07bf2f0938 ar-dc07b NA NA NA IMmotion150-p14998 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 180 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p14998 IMmotion150 10 FALSE FALSE 0.041256242 0.289076121 0.345817517 -0.476671146 0.051441868 FALSE -0.131481359 0.041256242 0.020812036 0.005247134 -0.019723638 0.222282856 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p15605.ar.4047b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4047bc3f5cc5 ar-4047b NA p15605 NA IMmotion150-p15605 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 265 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p15605 IMmotion150 11 FALSE TRUE -0.799509234 0.860356623 0.319395769 0.13359477 0.13270133 FALSE 0.142687279 -0.799509234 -0.015410997 -0.024527301 -0.075526145 0.079108056 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p16333.ar.a2831 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a283121a3334 ar-a2831 NA NA NA IMmotion150-p16333 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.00000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p16333 IMmotion150 11 FALSE FALSE 0.912696897 1.242182387 0.393862917 0.400621057 0.951994977 TRUE 0.912696897 0.094330361 -0.012136304 0.131573753 -0.091427874 1.059156246 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p16409.ar.85d99 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_85d99ff60fa1 ar-85d99 NA NA NA IMmotion150-p16409 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 496.0000002 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p16409 IMmotion150 7 FALSE FALSE 1.613503065 -0.318180832 0.164763471 0.705008213 -0.117464451 FALSE -0.150286005 1.613503065 0.101489746 0.157854461 -0.003471583 -0.792077996 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p16751.ar.7ebff RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_7ebffeb12913 ar-7ebff NA p16751 NA IMmotion150-p16751 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 169 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p16751 IMmotion150 8 FALSE TRUE -0.528838283 -0.674140874 0.187894453 0.55669606 -0.906091041 FALSE 0.98556429 -0.528838283 -0.069781183 -0.021828451 0.017488947 -0.406510209 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p17164.ar.56638 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_56638a28baf1 ar-56638 NA NA NA IMmotion150-p17164 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 163 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p17164 IMmotion150 9 FALSE TRUE -0.006773327 0.072223031 0.755705017 -0.624475333 1.055042395 TRUE -0.006773327 0.387545767 0.008919681 0.009622228 0.038719826 0.778606922 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p17379.ar.faed6 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_faed61030fb6 ar-faed6 NA NA NA IMmotion150-p17379 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 166 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p17379 IMmotion150 10 FALSE FALSE 0.432443141 0.899304963 0.738040904 -0.28320195 2.052683677 TRUE 0.432443141 -1.062059521 -0.015709803 -0.108541313 -0.048742651 1.512202478 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p17426.ar.6ae0d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_6ae0dbf2b774 ar-6ae0d NA p17426 NA IMmotion150-p17426 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 89.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p17426 IMmotion150 10 FALSE FALSE 1.264488484 -0.875691668 0.548242553 0.177430168 -0.477557965 FALSE -0.845858516 1.264488484 0.103809602 0.013738672 0.070962187 -0.667492076 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p17615.ar.f7d9d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_f7d9d2270eb1 ar-f7d9d NA NA NA IMmotion150-p17615 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 96.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p17615 IMmotion150 11 FALSE FALSE 0.787587322 1.709990324 0.310265548 -0.510889012 1.640204786 TRUE 0.787587322 0.040307011 0.014743316 0.05880566 -0.062509949 1.610092953 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p18226.ar.4f0a6 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4f0a669dbab6 ar-4f0a6 NA p18226 NA IMmotion150-p18226 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p18226 IMmotion150 10 FALSE FALSE 2.554121576 -0.884826497 0.205619298 2.301472663 -1.646807976 FALSE -0.627248161 2.554121576 0.152599739 0.224170542 0.014729589 -1.16218094 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p18256.ar.fbb29 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_fbb29f350904 ar-fbb29 NA p18256 NA IMmotion150-p18256 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p18256 IMmotion150 10 FALSE FALSE 1.205286926 -0.70897647 0.378286756 -0.64389103 0.83547162 FALSE 0.662990639 1.205286926 0.066821802 0.116760257 0.009872644 0.356267137 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p18896.ar.ddffc RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_ddffcc3170d5 ar-ddffc NA p18896 NA IMmotion150-p18896 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 121 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p18896 IMmotion150 10 FALSE TRUE -0.60082091 -0.241837068 0.498063544 0.33006992 0.045212713 FALSE 1.185482727 -0.60082091 -0.130271535 0.038272714 0.009859594 0.156631969 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p19016.ar.c751b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c751b1e06785 ar-c751b NA NA NA IMmotion150-p19016 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 756 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p19016 IMmotion150 9 FALSE FALSE 0.321217485 0.053699891 0.598538672 -0.259967466 -0.461103081 FALSE -0.007499594 0.321217485 -0.011383606 0.011424233 0.053391165 -0.208666649 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p19478.ar.bde50 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_bde500eeb175 ar-bde50 NA NA NA IMmotion150-p19478 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 576 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p19478 IMmotion150 11 FALSE FALSE 1.038967911 0.641774349 0.655585662 1.08615606 0.82452022 TRUE 1.038967911 -1.167083615 -0.105826427 -0.042739391 -0.022969164 1.144125777 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p19507.ar.db0d1 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_db0d1ff27097 ar-db0d1 NA NA NA IMmotion150-p19507 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 85.99999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p19507 IMmotion150 11 FALSE TRUE -1.564374799 -0.067655298 0.185708111 0.354774741 -0.570255847 FALSE 1.52619259 -1.564374799 -0.122105061 -0.047474674 -0.053957803 0.382563028 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p20763.ar.edbe1 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_edbe18112110 ar-edbe1 NA p20763 NA IMmotion150-p20763 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 91.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p20763 IMmotion150 10 FALSE TRUE -1.343433685 0.645765321 0.237629737 -1.786261773 0.372928256 FALSE 0.478364121 -1.343433685 -0.048059606 -0.092923891 -0.075198024 0.104883403 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p21222.ar.1418a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_1418a5311984 ar-1418a NA NA NA IMmotion150-p21222 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p21222 IMmotion150 9 FALSE FALSE 1.113340296 -0.127179301 0.592574822 0.573158501 -0.451747506 FALSE -0.742125425 1.113340296 0.044682275 0.177230782 -0.048865027 -0.234111035 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p21389.ar.a2f5d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a2f5d47eaf65 ar-a2f5d NA p21389 NA IMmotion150-p21389 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 770.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p21389 IMmotion150 9 FALSE TRUE -0.42108348 -1.134341491 0.528529172 -1.160414499 -1.382958426 FALSE 0.019688565 -0.42108348 -0.046171158 -0.040619426 0.020741599 -0.956709492 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p21589.ar.55cc6 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_55cc6edfad7f ar-55cc6 NA NA NA IMmotion150-p21589 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 681.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p21589 IMmotion150 11 FALSE FALSE 1.81085017 1.463393776 0.443889581 0.524843714 1.831751194 TRUE 1.81085017 -1.901803023 -0.108921395 -0.062023429 -0.109130317 1.783882718 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p24023.ar.0098b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_0098b8010fb0 ar-0098b NA NA NA IMmotion150-p24023 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p24023 IMmotion150 10 FALSE FALSE 0.396616318 -0.49001556 0.484997342 0.386650541 -0.210347355 FALSE 0.579898658 0.396616318 -0.055817485 0.137850135 -0.006900263 -0.12111493 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p24162.ar.fbc63 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_fbc630254994 ar-fbc63 NA NA NA IMmotion150-p24162 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 424.9999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p24162 IMmotion150 11 FALSE FALSE 0.621514181 -0.636729382 0.572662014 -0.954407477 -0.611366036 FALSE 0.093604556 0.621514181 -0.011144733 0.043682378 0.056204387 0.121094166 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p25390.ar.fea96 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_fea969598925 ar-fea96 NA NA NA IMmotion150-p25390 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 708.0000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p25390 IMmotion150 10 FALSE FALSE 0.639634457 0.153323108 0.23255383 0.698190327 0.285640923 TRUE 0.639634457 0.208101527 -0.022989896 0.053754661 0.004110686 0.619789004 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p25680.ar.91e8d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_91e8d5b73f03 ar-91e8d NA NA NA IMmotion150-p25680 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 217 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p25680 IMmotion150 11 FALSE TRUE -0.083079093 1.722097651 0.401703109 0.206479353 1.078592169 TRUE -0.083079093 -0.671331275 0.012623099 -0.081881418 -0.037948554 0.98728308 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p25799.ar.49c4c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_49c4c0e12e32 ar-49c4c NA NA NA IMmotion150-p25799 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p25799 IMmotion150 11 FALSE TRUE -0.42944926 -1.207881914 0.711184894 -0.849361521 -1.032774217 FALSE 0.047156601 -0.42944926 -0.049586802 -0.054939713 0.039190369 -0.854430873 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p26304.ar.d7dcd RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d7dcd6bacd6d ar-d7dcd NA p26304 NA IMmotion150-p26304 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 495.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p26304 IMmotion150 11 FALSE FALSE 0.687839345 1.028960839 0.381305724 0.750419805 1.453521563 TRUE 0.687839345 -0.209212437 -0.008744619 0.010804261 -0.022955571 1.593513091 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p26467.ar.a6506 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a650671cbf73 ar-a6506 NA p26467 NA IMmotion150-p26467 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 43 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p26467 IMmotion150 9 FALSE FALSE 1.701361714 -0.022865908 0.285594111 0.791184655 -0.960013262 FALSE -0.090567913 1.701361714 0.084571071 0.149106285 0.027033442 -0.727969638 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p27487.ar.1478d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_1478de0e20c8 ar-1478d NA NA NA IMmotion150-p27487 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p27487 IMmotion150 9 FALSE FALSE 2.076432697 -0.95917022 0.200449535 -1.667620441 -0.665272341 FALSE -1.15290656 2.076432697 0.086968385 0.218842092 0.018291525 -0.724292682 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p27891.ar.5bf44 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_5bf448ed23ce ar-5bf44 NA NA NA IMmotion150-p27891 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 0 0.999999986 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p27891 IMmotion150 11 FALSE FALSE 1.882304242 0.906845505 0.203468564 0.469333908 0.504299891 TRUE 1.882304242 -0.751484534 -0.120685378 0.026383439 -0.004242907 0.587061859 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p28107.ar.fa9ff RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_fa9ffa7fe419 ar-fa9ff NA p28107 NA IMmotion150-p28107 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 103 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p28107 IMmotion150 12 FALSE FALSE 0.60283989 2.296298375 0.387079449 1.018124953 2.650426174 TRUE 0.60283989 -1.04681079 -0.088011849 0.014660274 -0.074834329 2.865200357 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p28132.ar.99560 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_9956056f1a8a ar-99560 NA NA NA IMmotion150-p28132 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p28132 IMmotion150 10 FALSE FALSE 0.601093621 0.065066466 0.476503365 0.80856295 0.599003148 TRUE 0.601093621 -0.245507409 -0.018830501 7.76e-4 -0.016933553 0.626184267 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p28238.ar.3482d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3482da2b32db ar-3482d NA p28238 NA IMmotion150-p28238 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 171 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p28238 IMmotion150 10 FALSE TRUE -1.343314233 -0.467350218 0.240737681 -0.598613338 -0.204111524 FALSE 0.64438375 -1.343314233 -0.085875638 -0.145596191 0.012240522 -0.495886568 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p28281.ar.7b516 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_7b516767034a ar-7b516 NA NA NA IMmotion150-p28281 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 89.00000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p28281 IMmotion150 11 FALSE TRUE -0.814836563 -0.064715804 0.655349764 1.470324601 -0.090959589 FALSE 0.755982088 -0.814836563 -0.115104123 0.056468617 -0.051661673 0.514081188 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p29414.ar.ea037 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_ea03718a5f4d ar-ea037 NA NA NA IMmotion150-p29414 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 509.0000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p29414 IMmotion150 11 FALSE TRUE -0.082462035 -0.286315915 0.613735956 -0.515226387 -0.960782661 FALSE -0.086751929 -0.082462035 -0.00258563 -0.013709845 0.003550217 -0.688801436 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p30781.ar.4ae11 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4ae113eae0a9 ar-4ae11 NA p30781 NA IMmotion150-p30781 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 356.9999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p30781 IMmotion150 10 FALSE FALSE 0.636275534 0.010397863 0.395738022 -0.576223826 0.067491244 FALSE 0.818030538 0.636275534 -0.00105731 0.097653434 0.014062349 0.063516083 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p31107.ar.a401d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a401d9d6c1bd ar-a401d NA NA NA IMmotion150-p31107 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 634 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p31107 IMmotion150 10 FALSE FALSE 1.33476001 -0.917415195 0.575489614 -1.449981892 -0.777581575 FALSE -0.433944501 1.33476001 0.006578315 0.100927754 0.09743738 -0.925208842 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p32412.ar.d386a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d386ac6bce6e ar-d386a NA NA NA IMmotion150-p32412 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 591.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p32412 IMmotion150 11 FALSE FALSE 0.919627046 0.235156737 0.264841935 -0.556937137 -0.968053273 FALSE 0.199845444 0.919627046 0.048104273 0.084805999 0.012032205 -0.603752836 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p32553.ar.021e4 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_021e4826da99 ar-021e4 NA NA NA IMmotion150-p32553 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 11 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p32553 IMmotion150 10 FALSE TRUE -0.446747648 -0.175747836 0.357821617 -0.242414837 -0.035835723 FALSE 0.360041869 -0.446747648 -0.068606696 -0.029972853 0.028322791 -0.016247278 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p32845.ar.b9ecc RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_b9ecc1c4a366 ar-b9ecc NA p32845 NA IMmotion150-p32845 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 78.99999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p32845 IMmotion150 11 FALSE TRUE -0.936154198 -0.528041209 0.561936894 -1.622425078 -1.076387592 FALSE -1.184975837 -0.936154198 -0.02091019 -0.178528058 0.03923315 -0.971302098 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p32922.ar.6366a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_6366a1e7d158 ar-6366a NA NA NA IMmotion150-p32922 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 335.9999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p32922 IMmotion150 8 TRUE FALSE 1.227535428 -1.226211956 0.309685308 -1.008090992 -1.441508216 FALSE -0.078976781 1.227535428 0.021623054 0.06304794 0.108380508 -0.840342233 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p33581.ar.1342d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_1342d7eee1da ar-1342d NA p33581 NA IMmotion150-p33581 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 1 697.9999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p33581 IMmotion150 10 FALSE TRUE -0.955301455 0.325311669 0.790136753 2.401954973 0.956360018 TRUE -0.955301455 -0.342237328 0.033836876 -0.142694556 0.044212217 0.822179934 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p33602.ar.6d415 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_6d415cc09f6c ar-6d415 NA NA NA IMmotion150-p33602 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 764.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p33602 IMmotion150 10 FALSE TRUE -0.480857621 -0.413747317 0.631657747 0.405593753 -0.578154492 FALSE -0.32914587 -0.480857621 -0.007871825 -0.092920472 0.019067585 -0.864298995 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p33774.ar.27405 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_27405f7918dd ar-27405 NA NA NA IMmotion150-p33774 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 226 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p33774 IMmotion150 10 FALSE FALSE 0.228442607 0.192714914 0.503844128 0.126421399 -0.279435886 FALSE -0.500273034 0.228442607 -0.026832343 0.028021098 0.032433333 -0.449395025 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p34223.ar.39de2 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_39de24828e3b ar-39de2 NA p34223 NA IMmotion150-p34223 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 0 85 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p34223 IMmotion150 9 FALSE FALSE 0.317962944 -1.139820941 0.598022281 -0.690202549 -1.050683297 FALSE -0.830573925 0.317962944 0.042397585 -0.033228815 0.033326754 -0.98812565 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p34855.ar.89f86 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_89f8690d4dc8 ar-89f86 NA p34855 NA IMmotion150-p34855 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 81 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p34855 IMmotion150 11 FALSE TRUE -0.575008109 -1.490285294 0.802994321 0.510957212 -1.040897957 FALSE 0.467907365 -0.575008109 -0.017507954 -0.078919288 0.010961734 -0.989945236 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p35317.ar.355c3 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_355c38ac45ad ar-355c3 NA p35317 NA IMmotion150-p35317 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 588.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p35317 IMmotion150 10 FALSE TRUE -0.537753368 1.159389756 0.700438837 0.854312894 2.12141726 TRUE -0.537753368 -1.21973644 -0.024881383 -0.112616614 -0.068332895 1.823343172 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p35813.ar.90caf RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_90caf6ab73f8 ar-90caf NA NA NA IMmotion150-p35813 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 1007 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p35813 IMmotion150 10 FALSE TRUE -1.248882798 -0.929467344 0.491604618 -0.075980718 -0.642307369 FALSE 0.44776313 -1.248882798 -0.138476218 -0.02808254 -0.0140723 -0.216024638 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p36298.ar.fad25 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_fad257fe3746 ar-fad25 NA p36298 NA IMmotion150-p36298 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p36298 IMmotion150 13 FALSE TRUE -0.698497132 -0.458273024 0.829890425 1.301975983 0.869940182 FALSE 0.170444367 -0.698497132 -0.025322701 -0.103868866 0.011970111 0.673733737 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p36954.ar.44107 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4410774fcef1 ar-44107 NA p36954 NA IMmotion150-p36954 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 793 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p36954 IMmotion150 11 FALSE FALSE 0.786229617 2.566488741 0.686891359 2.319493679 2.273248353 TRUE 0.786229617 -2.237475267 -0.144348909 -0.029792916 -0.148921417 2.595838824 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p37011.ar.a4d25 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a4d25b70d77c ar-a4d25 NA p37011 NA IMmotion150-p37011 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 225 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p37011 IMmotion150 8 FALSE FALSE 0.810956649 -0.804928727 0.28709123 -0.656998304 0.10222811 FALSE 0.142369735 0.810956649 0.016165904 0.063010418 0.048638707 -0.326343273 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p37093.ar.3d98a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3d98a322f739 ar-3d98a NA p37093 NA IMmotion150-p37093 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 58 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p37093 IMmotion150 11 FALSE FALSE 0.24597312 1.141692157 0.432042573 1.112260123 0.330292861 TRUE 0.24597312 0.668958966 0.00512098 0.088883076 0.017494464 0.868661912 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p37173.ar.293a5 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_293a5f4fa4c2 ar-293a5 NA p37173 NA IMmotion150-p37173 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 659.9999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p37173 IMmotion150 11 FALSE FALSE 1.949632565 1.031221337 0.44898795 1.088459602 2.176046033 TRUE 1.949632565 -1.177760892 -0.00806713 -0.088171628 -0.076207204 1.861547778 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p38868.ar.e9e28 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_e9e28cef4211 ar-e9e28 NA NA NA IMmotion150-p38868 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 254 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p38868 IMmotion150 8 FALSE FALSE 0.138072318 -0.907416833 0.461763858 -2.788404823 -1.493218582 FALSE 0.583414907 0.138072318 0.028589639 0.01672439 -0.024410935 -1.772160338 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p40536.ar.3579c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3579c25346bc ar-3579c NA NA NA IMmotion150-p40536 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 532.0000002 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p40536 IMmotion150 12 FALSE FALSE 1.248743811 1.310657805 0.545586879 1.242410842 1.202242862 TRUE 1.248743811 -2.663205349 -0.229868579 -0.127278703 -0.041092251 1.264039324 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p41186.ar.1d209 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_1d209304d988 ar-1d209 NA p41186 NA IMmotion150-p41186 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 82.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p41186 IMmotion150 8 FALSE FALSE 2.259951786 -0.672654983 0.319295198 0.0052736 -0.208552652 FALSE -0.327825502 2.259951786 0.096655612 0.298838702 -0.036807705 -0.277445838 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p42765.ar.43295 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4329596d1dd2 ar-43295 NA p42765 NA IMmotion150-p42765 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 314.0000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p42765 IMmotion150 11 FALSE FALSE 1.096094376 0.323817398 0.436344203 -0.071089077 0.503913776 TRUE 1.096094376 -1.12665901 -0.029336364 -0.017775707 -0.112274977 0.59264516 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p43066.ar.75026 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_7502661a160a ar-75026 NA p43066 NA IMmotion150-p43066 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 85 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p43066 IMmotion150 10 FALSE TRUE -0.47349193 -0.229939708 0.554024865 -0.689026326 0.004397458 FALSE -0.097396133 -0.47349193 -0.052067803 -0.045167432 0.028381095 -0.4158221 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p43682.ar.c925d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c925d5ddf7e2 ar-c925d NA p43682 NA IMmotion150-p43682 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 166 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p43682 IMmotion150 11 FALSE FALSE 0.324247646 1.155538815 0.435066668 0.290514212 1.818845524 TRUE 0.324247646 -1.564127942 -0.060532614 -0.181025233 -0.007686765 1.317958445 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p43872.ar.6c7f9 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_6c7f94064bf5 ar-6c7f9 NA NA NA IMmotion150-p43872 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 250 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p43872 IMmotion150 9 FALSE FALSE 1.268636989 -0.10655726 0.732247926 -0.304294909 -0.398461437 FALSE -0.601446247 1.268636989 0.114168205 0.047756512 0.033989845 -0.29163388 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p44376.ar.ac07f RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_ac07fd7297c8 ar-ac07f NA p44376 NA IMmotion150-p44376 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 423.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p44376 IMmotion150 10 FALSE FALSE 0.198371979 0.15176914 0.523477701 0.383317271 0.840395803 TRUE 0.198371979 0.003788981 0.039135799 -0.051343937 0.009802299 0.862937217 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p45459.ar.1af67 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_1af6737b0333 ar-1af67 NA p45459 NA IMmotion150-p45459 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 332.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p45459 IMmotion150 9 FALSE FALSE 0.805666006 -1.204466962 0.733865363 0.452532606 -1.110894132 FALSE -1.200912379 0.805666006 0.065110206 -4.54e-4 0.049983036 -1.237830658 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p45849.ar.d1f9e RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d1f9e2052711 ar-d1f9e NA p45849 NA IMmotion150-p45849 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 663.9999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p45849 IMmotion150 9 FALSE FALSE 1.782958201 -0.980137217 0.483869958 -0.996833029 -1.979946194 FALSE -0.762147546 1.782958201 0.144345272 0.055952968 0.071616907 -1.655221783 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p45971.ar.4be0b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4be0bd57c901 ar-4be0b NA NA NA IMmotion150-p45971 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 38.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p45971 IMmotion150 9 FALSE FALSE 0.84623555 0.062043523 0.381026886 -1.214706865 1.745225587 TRUE 0.84623555 0.999652416 0.085744505 0.100386715 -0.032882302 1.277439287 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p46605.ar.eb284 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_eb2845cfef44 ar-eb284 NA NA NA IMmotion150-p46605 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 597 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p46605 IMmotion150 10 FALSE TRUE -0.698142869 0.39922537 0.766366066 -1.004891654 0.968923126 TRUE -0.698142869 -0.083508734 -0.025141568 -0.026323843 0.032168069 0.842000119 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p47331.ar.ab299 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_ab2991ec83ea ar-ab299 NA p47331 NA IMmotion150-p47331 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 527.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p47331 IMmotion150 12 FALSE FALSE 1.724635153 1.065292688 0.199774198 1.628782263 1.696221968 TRUE 1.724635153 -1.663875805 -0.159076687 -0.028443782 -0.047266982 1.01882615 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p47721.ar.71f6b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_71f6b2f43e64 ar-71f6b NA NA NA IMmotion150-p47721 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 80.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p47721 IMmotion150 11 FALSE TRUE -1.496390177 0.847285143 0.791728797 0.446790554 1.550925906 FALSE 0.249982053 -1.496390177 -0.070155541 -0.137422454 -0.029635484 1.042252712 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p48663.ar.37ce7 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_37ce7f8ad995 ar-37ce7 NA NA NA IMmotion150-p48663 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 688 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p48663 IMmotion150 10 FALSE TRUE -0.184085405 0.100259774 0.765432372 -1.462176178 0.109312527 FALSE -0.036445696 -0.184085405 -0.035066839 0.007516131 -0.005114307 -0.203526913 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p48954.ar.37f99 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_37f99a611b7b ar-37f99 NA p48954 NA IMmotion150-p48954 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 428.9999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p48954 IMmotion150 9 FALSE TRUE -0.61252629 -0.962441229 0.713113236 0.179484448 -0.839088933 FALSE -0.591823317 -0.61252629 -0.083642237 -0.10187754 0.085843275 -0.941948622 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p49559.ar.84b89 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_84b89611a2ab ar-84b89 NA NA NA IMmotion150-p49559 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 585.0000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p49559 IMmotion150 10 FALSE FALSE 0.715875206 -0.187931878 0.316210336 -1.032075936 0.111636671 TRUE 0.715875206 -0.857755151 -0.099642928 -0.017817445 -0.005690583 0.244810598 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p49991.ar.5d93a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_5d93a0808784 ar-5d93a NA p49991 NA IMmotion150-p49991 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 586.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p49991 IMmotion150 12 FALSE TRUE -3.161248448 0.862143199 0.862953687 0.714961057 1.666108009 FALSE -0.195345074 -3.161248448 -0.121208955 -0.326400159 -0.05062155 0.900025219 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p50066.ar.6c06c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_6c06cb9d6609 ar-6c06c NA NA NA IMmotion150-p50066 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 187 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p50066 IMmotion150 10 FALSE FALSE 1.058378893 0.111934417 0.280481828 1.452281628 -0.056586636 FALSE 0.791111826 1.058378893 0.05168605 0.131103906 -0.008467711 0.286477495 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p50332.ar.a77dd RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a77ddaf87ae9 ar-a77dd NA p50332 NA IMmotion150-p50332 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 278 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p50332 IMmotion150 11 FALSE TRUE -0.162634035 0.363806849 0.813787915 0.206680099 0.45606956 FALSE -0.95537952 -0.162634035 0.124798844 -0.159787886 -0.015545652 -0.23015804 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p50697.ar.605a2 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_605a291d2bd2 ar-605a2 NA p50697 NA IMmotion150-p50697 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 810 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p50697 IMmotion150 9 FALSE TRUE -0.13058583000000001 -1.449249004 0.273237339 2.224349338 -1.264044884 FALSE -0.194435612 -0.13058583000000001 -0.018990178 -0.046608948 0.043101176 -1.286909227 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p50830.ar.c3b4a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c3b4a1a4d390 ar-c3b4a NA NA NA IMmotion150-p50830 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 548.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p50830 IMmotion150 11 FALSE TRUE -0.677042506 0.773813985 0.533888355 0.337767359 -0.565179975 FALSE -0.461379252 -0.677042506 -0.051852662 -0.106694172 0.045735432 0.342491642 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p50976.ar.26f6d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_26f6da4b340d ar-26f6d NA NA NA IMmotion150-p50976 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 172 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p50976 IMmotion150 9 TRUE FALSE 1.420838017 -1.165063043 0.426991295 -0.653250564 -1.48721505 FALSE -1.157541023 1.420838017 0.163023754 -0.027772237 0.060401903 -1.233202254 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p51832.ar.890dd RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_890dd1d27592 ar-890dd NA NA NA IMmotion150-p51832 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 33.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p51832 IMmotion150 10 FALSE FALSE 0.890635125 0.947087919 0.390747331 0.070731651 0.174756073 FALSE 0.357238217 0.890635125 0.081783223 0.110722687 -0.051253441 0.155195582 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p51984.ar.c0646 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c0646ebb80fc ar-c0646 NA NA NA IMmotion150-p51984 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 82.00000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p51984 IMmotion150 11 FALSE FALSE 0.232653355 -1.034630552 0.939435393 2.369650637 0.061600864 FALSE -0.802970649 0.232653355 0.010432955 0.00331602 0.016078254 -0.203672001 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p52272.ar.5b320 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_5b32048873f4 ar-5b320 NA p52272 NA IMmotion150-p52272 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 595 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p52272 IMmotion150 11 FALSE FALSE 0.728801883 -0.029631893 0.246345535 -1.009848913 0.574402744 FALSE 1.098444987 0.728801883 -0.011405427 0.091355825 0.037545837 0.47427023 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p52299.ar.8e4c5 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_8e4c59e7016d ar-8e4c5 NA NA NA IMmotion150-p52299 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p52299 IMmotion150 11 FALSE TRUE -1.403590266 -0.048260285 0.733655772 0.346878849 0.325392022 FALSE -0.729096788 -1.403590266 -0.049097798 -0.153495766 -0.023564913 -0.255745612 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p52494.ar.9f2ad RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_9f2adf3fd8a2 ar-9f2ad NA p52494 NA IMmotion150-p52494 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 135 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p52494 IMmotion150 11 FALSE TRUE -0.231628837 -1.210120959 0.823783318 0.908332252 -0.535451277 FALSE -0.576969366 -0.231628837 7.76e-4 -0.062800915 0.018788128 -0.73535483 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p52837.ar.02ccc RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_02cccdb601a3 ar-02ccc NA NA NA IMmotion150-p52837 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 756 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p52837 IMmotion150 10 FALSE FALSE 0.114018217 -0.351520528 0.714444353 0.695280697 -0.004885011 FALSE 0.149564638 0.114018217 0.002280296 -0.008240517 0.024041092 0.152425415 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p52932.ar.5c3b6 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_5c3b69de42e8 ar-5c3b6 NA p52932 NA IMmotion150-p52932 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p52932 IMmotion150 11 FALSE FALSE 0.837553047 0.330806068 0.291394629 -0.515811662 0.540255804 TRUE 0.837553047 0.996502854 0.061524443 0.169857161 -0.067359638 0.660939557 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p53162.ar.05824 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_058243db4e70 ar-05824 NA p53162 NA IMmotion150-p53162 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 85 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p53162 IMmotion150 11 FALSE TRUE -0.016862616 0.695710803 0.364189889 5.187605975 1.111202264 TRUE -0.016862616 -0.072890518 0.098616353 -0.110625596 -0.005914848 0.903708005 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p53431.ar.d8ed2 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d8ed24f7631a ar-d8ed2 NA p53431 NA IMmotion150-p53431 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 90 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p53431 IMmotion150 12 FALSE FALSE 0.74062782 0.238525873 0.386947432 1.439700523 1.846932824 TRUE 0.74062782 -0.332350112 0.085717585 -0.047851519 -0.093073019 2.003490904 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p53624.ar.5dd85 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_5dd85cfb642d ar-5dd85 NA p53624 NA IMmotion150-p53624 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85.99999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p53624 IMmotion150 8 FALSE FALSE 0.623323903 -1.179713932 0.249734106 -2.047019777 -1.614298377 FALSE -0.708529812 0.623323903 0.063123212 -0.020360937 0.0485061 -1.383667997 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p53920.ar.8310d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_8310d6949822 ar-8310d NA p53920 NA IMmotion150-p53920 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 0 568.0000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p53920 IMmotion150 10 FALSE FALSE 0.392785827 1.592258524 0.290982481 0.669927514 1.230978311 TRUE 0.392785827 -0.460699979 -0.020527164 0.003288862 -0.04692794 0.775093289 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p54120.ar.0f1aa RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_0f1aa15ceb71 ar-0f1aa NA p54120 NA IMmotion150-p54120 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 788.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p54120 IMmotion150 10 FALSE FALSE 0.320392928 1.103709083 0.442441916 1.236729871 0.861075794 FALSE -0.375155527 0.320392928 0.038448059 0.034648271 -0.034519337 0.489564527 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p54163.ar.57bf6 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_57bf62de2953 ar-57bf6 NA p54163 NA IMmotion150-p54163 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p54163 IMmotion150 11 FALSE FALSE 0.832022987 0.88236977 0.591679706 0.385788963 -0.304326572 FALSE -0.220337609 0.832022987 0.043046792 0.16537422 -0.069566296 0.462062743 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p54315.ar.edc42 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_edc4267529ac ar-edc42 NA p54315 NA IMmotion150-p54315 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 178 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p54315 IMmotion150 11 FALSE TRUE -0.584808616 0.067399133 0.650083587 0.813431088 0.02411418 FALSE -0.246040501 -0.584808616 -0.018233079 -0.097789062 0.01626608 -0.362685535 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p54409.ar.fe8d6 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_fe8d68bdc7d8 ar-fe8d6 NA p54409 NA IMmotion150-p54409 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 1 763.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p54409 IMmotion150 10 FALSE FALSE 0.878549834 0.301157592 0.515651631 0.25395323 0.948582868 TRUE 0.878549834 0.554736276 0.050084923 0.064843539 -0.016691475 0.741506483 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p54753.ar.83db1 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_83db11c1834f ar-83db1 NA NA NA IMmotion150-p54753 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 505 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p54753 IMmotion150 10 TRUE FALSE 1.328468381 -1.148671423 0.556494287 -1.198772241 -0.667112243 FALSE -0.542497778 1.328468381 0.00371891 0.142798074 0.061710176 -0.925822569 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p55061.ar.46457 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_46457d85783f ar-46457 NA p55061 NA IMmotion150-p55061 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 85 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p55061 IMmotion150 9 FALSE FALSE 0.647354679 0.079189875 0.252639112 0.032131189 -0.889413564 FALSE -2.31e-4 0.647354679 -0.023621948 0.123107666 0.005935211 -0.668149767 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p55264.ar.0f158 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_0f158c9a83b7 ar-0f158 NA NA NA IMmotion150-p55264 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83.99999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p55264 IMmotion150 10 FALSE TRUE -0.098411985 0.496657106 0.198399234 -1.272507207 0.602688974 FALSE 0.326658975 -0.098411985 -0.021858205 0.007041365 0.004461607 0.100079904 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p55684.ar.6de0a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_6de0a38749ce ar-6de0a NA p55684 NA IMmotion150-p55684 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 506 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p55684 IMmotion150 11 FALSE TRUE -0.262275325 -0.054563542 0.230295815 0.488863878 0.51040810700000006 FALSE 1.038420602 -0.262275325 -0.079437211 0.038284759 0.012622011 0.139580228 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p55787.ar.a1497 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a1497109ad96 ar-a1497 NA NA NA IMmotion150-p55787 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p55787 IMmotion150 11 FALSE TRUE -0.183838339 -1.69683648 0.382296898 -0.027715695 -1.39587271 FALSE -0.81296167 -0.183838339 0.126811264 -0.218682188 0.052849424 -1.107607107 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p55814.ar.d3107 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d310797a552f ar-d3107 NA p55814 NA IMmotion150-p55814 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 203 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p55814 IMmotion150 8 FALSE TRUE -0.326634965 -0.583780044 0.460046209 -0.468730277 -0.054050217 FALSE 0.159216851 -0.326634965 -0.029722352 -0.063561057 0.040010325 -0.220191366 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p56237.ar.935a8 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_935a83967cfc ar-935a8 NA p56237 NA IMmotion150-p56237 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 80.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p56237 IMmotion150 11 FALSE FALSE 1.486962295 0.308865228 0.456343615 0.304074704 -0.396730682 FALSE 0.372356521 1.486962295 0.096170336 0.173109804 -0.033798189 -0.343584042 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p56291.ar.1d985 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_1d985bdef050 ar-1d985 NA p56291 NA IMmotion150-p56291 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 214 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p56291 IMmotion150 11 FALSE TRUE -0.561090817 -0.103110806 0.737034529 1.974620467 -0.128586064 FALSE -0.268161414 -0.561090817 -0.084305121 0.099423165 -0.088984223 -0.21105619 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p56741.ar.2a443 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_2a443c5b1c8e ar-2a443 NA NA NA IMmotion150-p56741 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 591.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p56741 IMmotion150 10 FALSE FALSE 1.149783465 1.149913002 0.645806771 -0.044298569 2.975861028 TRUE 1.149783465 -1.547320681 -0.039654843 -0.167871757 -0.035608079 2.619242071 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p57764.ar.4767e RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4767e67af8a8 ar-4767e NA p57764 NA IMmotion150-p57764 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 45 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p57764 IMmotion150 9 FALSE FALSE 0.935225564 0.197062581 0.240384258 -0.417295003 -1.109651967 FALSE -0.282650967 0.935225564 0.137741801 0.007003248 -0.004693268 -0.625679906 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p57834.ar.689be RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_689be0421d3c ar-689be NA p57834 NA IMmotion150-p57834 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 587.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p57834 IMmotion150 7 TRUE FALSE 1.105634882 -1.257704718 0.557980423 -0.621660758 -1.266870369 FALSE -0.753226707 1.105634882 0.12407056 -0.016452886 0.052044302 -1.309784117 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p58299.ar.b22ec RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_b22ec327f7f0 ar-b22ec NA NA NA IMmotion150-p58299 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 701 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p58299 IMmotion150 11 FALSE TRUE -0.631807429 0.145874184 0.625942668 0.691574797 0.971961325 FALSE -0.65289561 -0.631807429 -0.026737091 -0.066218329 -0.010125924 0.60830487 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p58399.ar.79085 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_790850f26d55 ar-79085 NA p58399 NA IMmotion150-p58399 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 528.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p58399 IMmotion150 10 FALSE FALSE 0.216954524 0.219481628 0.816734898 -0.985754248 -1.092399916 FALSE -0.164922137 0.216954524 0.036144747 0.035956005 -0.041574027 -0.663328299 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p59051.ar.41711 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_41711704058a ar-41711 NA p59051 NA IMmotion150-p59051 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 153 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p59051 IMmotion150 9 FALSE FALSE 0.484663359 0.338558114 0.651462086 -1.181205786 -0.176121463 FALSE -1.35003271 0.484663359 0.107816623 -0.063968089 0.018743243 -0.217996066 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p59055.ar.4260f RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4260f878a482 ar-4260f NA p59055 NA IMmotion150-p59055 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 47.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p59055 IMmotion150 11 FALSE FALSE 0.957716578 0.479460775 0.352463879 0.6210878 1.0142993279999999 TRUE 0.957716578 -2.336183299 -0.079742126 -0.229738084 -0.046035927 0.937128134 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p59153.ar.41e20 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_41e2037af435 ar-41e20 NA p59153 NA IMmotion150-p59153 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 708.0000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p59153 IMmotion150 11 FALSE TRUE -0.16749967 0.633060852 0.501716842 -0.263286454 0.094414285 FALSE 0.313963531 -0.16749967 0.059621182 -0.074745419 -0.0150243 0.0380829 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p59257.ar.6f921 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_6f9210d4d203 ar-6f921 NA p59257 NA IMmotion150-p59257 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p59257 IMmotion150 10 FALSE FALSE 0.735713197 -0.237528287 0.171248519 -0.409580604 -0.045711428 FALSE -0.735647106 0.735713197 0.003536767 0.136639501 -0.019946462 -0.178232167 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p59809.ar.82372 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_8237266761ca ar-82372 NA NA NA IMmotion150-p59809 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 315.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p59809 IMmotion150 12 FALSE TRUE -0.288067113 1.055552034 0.596487869 0.549969257 -0.141674487 FALSE 0.641909906 -0.288067113 -0.023980418 -0.00268143 -0.010420846 0.111980684 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p60596.ar.f566c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_f566cc82cca4 ar-f566c NA p60596 NA IMmotion150-p60596 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 38.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p60596 IMmotion150 10 FALSE FALSE 0.40643852 -0.589288892 0.331859004 0.921385745 -1.630179894 FALSE -0.324429868 0.40643852 6.58e-4 0.035589658 0.028687338 -1.187423426 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p60772.ar.beb8e RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_beb8e9009246 ar-beb8e NA p60772 NA IMmotion150-p60772 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 252 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p60772 IMmotion150 10 FALSE FALSE 0.467964444 -0.250972994 0.43968443 -1.746973828 -0.402165808 FALSE 0.204175094 0.467964444 -0.016446306 0.081381017 0.015113218 -0.122737013 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p60814.ar.1c2a5 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_1c2a5ac94492 ar-1c2a5 NA p60814 NA IMmotion150-p60814 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p60814 IMmotion150 9 FALSE FALSE 1.190315808 -0.85475151 0.453469114 -1.554656202 -1.373230235 FALSE -0.183895591 1.190315808 0.018482278 0.105911891 0.059043754 -1.163422664 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p60815.ar.9d32a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_9d32a243ca4f ar-9d32a NA p60815 NA IMmotion150-p60815 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 175 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p60815 IMmotion150 10 FALSE TRUE -1.037058299 0.22378687 0.73438367 -0.196575298 0.705046627 FALSE 0.138838776 -1.037058299 -0.100731227 -0.082141414 0.024927757 0.479243327 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p60988.ar.3817a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3817ac9fafe2 ar-3817a NA p60988 NA IMmotion150-p60988 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 252 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p60988 IMmotion150 9 FALSE FALSE 0.428130138 -0.245670327 0.315603062 -0.999226792 -1.323673078 FALSE -0.05308945 0.428130138 -0.00557279 0.073726673 0.006791716 -1.264326249 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p61622.ar.fa5bc RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_fa5bc1058e41 ar-fa5bc NA p61622 NA IMmotion150-p61622 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 801.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p61622 IMmotion150 8 FALSE TRUE -0.252884038 -0.973115863 0.722590112 -2.170062041 -1.473869731 FALSE 0.141465686 -0.252884038 -0.049384306 -0.040917489 0.058923297 -1.221399223 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p61632.ar.73801 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_738019e47272 ar-73801 NA p61632 NA IMmotion150-p61632 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 758 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p61632 IMmotion150 10 FALSE FALSE 1.502507643 0.057242479 0.308579096 -1.867089432 -0.267431735 FALSE 0.297024836 1.502507643 0.054649745 0.196893239 -0.011171571 -0.461221759 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p61893.ar.51a00 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_51a004509cc1 ar-51a00 NA p61893 NA IMmotion150-p61893 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 561 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p61893 IMmotion150 11 FALSE FALSE 0.34345933 0.318340941 0.681148241 1.047679786 -0.182190055 FALSE -0.547617564 0.34345933 -0.023899817 0.068840332 0.009944519 -0.068252923 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p62140.ar.b5aff RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_b5aff042a6ff ar-b5aff NA p62140 NA IMmotion150-p62140 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 803.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p62140 IMmotion150 9 FALSE TRUE -0.548172875 0.585541323 0.727177752 0.221686241 0.53410201 FALSE -0.44183181 -0.548172875 0.014879429 -0.080634297 -0.025572769 0.180645724 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p62330.ar.58ebf RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_58ebfdfacb9d ar-58ebf NA p62330 NA IMmotion150-p62330 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 170 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p62330 IMmotion150 9 FALSE FALSE 0.826877142 -0.705119524 0.350465522 -0.867225662 -0.61745634 FALSE 0.169137643 0.826877142 0.098966015 0.04852244 -0.019285267 -0.197596126 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p62920.ar.68d5a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_68d5ac6fd656 ar-68d5a NA p62920 NA IMmotion150-p62920 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 347.0000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p62920 IMmotion150 12 FALSE TRUE -0.563641139 -1.14747939 0.493269984 -0.420342395 -0.584802108 FALSE 0.584337079 -0.563641139 -0.072500747 0.078167718 -0.079358036 -0.629573689 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p63636.ar.c0f7a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c0f7a7b642cd ar-c0f7a NA p63636 NA IMmotion150-p63636 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 839.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p63636 IMmotion150 10 FALSE TRUE -0.121586609 0.249885011 0.584111612 -0.551857471 0.371925445 FALSE 0.57185211 -0.121586609 -0.012052006 8.83e-4 -0.006455662 0.251594428 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p63840.ar.13a16 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_13a16c33883f ar-13a16 NA NA NA IMmotion150-p63840 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 248 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p63840 IMmotion150 9 FALSE FALSE 0.482438813 -0.379889827 0.680104912 0.091231682 -0.694405314 FALSE -0.997745103 0.482438813 0.0369385 0.032416822 -0.006204872 -0.354999646 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p64208.ar.cb57a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_cb57aea6138b ar-cb57a NA NA NA IMmotion150-p64208 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p64208 IMmotion150 12 FALSE FALSE 0.618675069 0.069479249 0.339634236 -0.185421393 0.059290121 FALSE 0.425332096 0.618675069 0.048869105 0.074594948 -0.020147786 0.237736926 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p64398.ar.86324 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_86324540438f ar-86324 NA NA NA IMmotion150-p64398 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85.99999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p64398 IMmotion150 9 FALSE TRUE -0.244038959 -0.752265516 0.756204964 -1.318528683 -0.795747814 FALSE -0.369658773 -0.244038959 0.004111812 -0.028212682 -0.026496823 -1.105584037 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p64456.ar.59df0 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_59df00d92b96 ar-59df0 NA NA NA IMmotion150-p64456 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 87.99999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p64456 IMmotion150 9 FALSE TRUE -0.639847713 -1.906275088 0.240035791 0.980145354 -1.489563167 FALSE -0.283529348 -0.639847713 0.04176362 -0.197637263 0.037594995 -1.652531621 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p64990.ar.906fa RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_906fa6b2879f ar-906fa NA p64990 NA IMmotion150-p64990 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 90 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p64990 IMmotion150 11 FALSE TRUE -0.658089285 -1.137698153 0.42283509 0.392827289 -1.723503168 FALSE -0.988935538 -0.658089285 -0.002615432 -0.125954212 0.003932931 -1.5818305 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p65110.ar.1da68 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_1da68057e648 ar-1da68 NA p65110 NA IMmotion150-p65110 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 674.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p65110 IMmotion150 10 FALSE FALSE 0.874577618 -0.12457166 0.271993781 -1.295866447 -0.169185351 FALSE 0.118753147 0.874577618 0.055651322 0.050543215 0.028400171 -0.148562004 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p65181.ar.d3009 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d3009cb3c474 ar-d3009 NA p65181 NA IMmotion150-p65181 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 250 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p65181 IMmotion150 10 FALSE FALSE 0.225193778 0.980685211 0.714477769 0.042477731 1.745942105 TRUE 0.225193778 -0.986903973 -0.014193305 -0.141572082 -0.009439558 1.391393529 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p65353.ar.df874 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_df874ebd8139 ar-df874 NA NA NA IMmotion150-p65353 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 38 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p65353 IMmotion150 11 FALSE TRUE -0.129961449 -0.41293654 0.353735718 -2.102343195 -0.124627956 FALSE -0.537422054 -0.129961449 0.022330705 -0.104212033 0.050538335 -0.553951292 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p66613.ar.01430 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_014307e64a29 ar-01430 NA NA NA IMmotion150-p66613 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 835.0000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p66613 IMmotion150 10 FALSE TRUE -0.484204062 0.633158291 0.450483267 -2.321918574 0.368828961 FALSE 0.372195978 -0.484204062 -0.01301764 -0.034448278 -0.024835317 -0.023461345 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p67597.ar.3e120 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3e120fba7b12 ar-3e120 NA NA NA IMmotion150-p67597 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 672.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p67597 IMmotion150 9 FALSE FALSE 1.341801864 -0.406075818 0.140871519 -0.588011022 -0.978420917 FALSE 0.709122598 1.341801864 -0.005719853 0.194111187 0.02947159 -0.496719733 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p68239.ar.97ff2 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_97ff20c67c25 ar-97ff2 NA p68239 NA IMmotion150-p68239 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 45.99999998 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p68239 IMmotion150 12 FALSE FALSE 0.137897198 0.153755807 0.35185761 1.50997664 0.192927114 FALSE -0.193507436 0.137897198 0.048474586 -0.048206432 0.010721942 -0.174576502 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p69089.ar.657cc RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_657cc28bc9e7 ar-657cc NA p69089 NA IMmotion150-p69089 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 251 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p69089 IMmotion150 11 FALSE TRUE -0.883933637 0.739535939 0.570689121 -0.604928936 0.091342031 FALSE 0.509602529 -0.883933637 -0.156463036 0.04235268 -0.007947501 0.047546112 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p69129.ar.219d6 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_219d65c6f9d8 ar-219d6 NA p69129 NA IMmotion150-p69129 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 583.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p69129 IMmotion150 12 FALSE TRUE -2.154909865 1.121973621 0.429525038 2.366945339 0.555094719 FALSE 1.115390701 -2.154909865 -0.077863924 -0.192486993 -0.06294382 0.482753593 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p69561.ar.e3544 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e35442c9710f ar-e3544 NA p69561 NA IMmotion150-p69561 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 840.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p69561 IMmotion150 10 FALSE TRUE -0.152105558 0.094144559 0.673017951 1.843147446 0.322272085 TRUE -0.152105558 -0.41279548 0.050920812 0.004256469 -0.118118222 0.490340602 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p69645.ar.a30d9 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_a30d9b31a09d ar-a30d9 NA NA NA IMmotion150-p69645 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p69645 IMmotion150 11 FALSE TRUE -0.897378185 0.609712489 0.480082361 -0.950400271 0.03349582 FALSE -0.064803562 -0.897378185 -0.055343316 -0.106453088 0.014635522 0.192917823 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p69959.ar.57b15 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_57b15fd7e82a ar-57b15 NA p69959 NA IMmotion150-p69959 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 760 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p69959 IMmotion150 9 FALSE FALSE 1.329052002 -0.131379765 0.442397862 -1.035487818 -1.001532548 FALSE 0.400967727 1.329052002 0.044884137 0.119731004 0.042751441 -0.851594297 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p69986.ar.f1402 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_f14025585f4f ar-f1402 NA p69986 NA IMmotion150-p69986 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 260 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p69986 IMmotion150 9 FALSE TRUE -0.839346063 -0.223215803 0.307779243 -0.82513522 -0.045654736 FALSE 1.122648402 -0.839346063 -0.178754861 0.053727575 0.013114885 -0.136341399 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p71174.ar.486cd RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_486cdc2d5597 ar-486cd NA NA NA IMmotion150-p71174 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 249 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p71174 IMmotion150 9 FALSE FALSE 0.391513399 -0.385723444 0.713571024 -2.106513679 -0.630833598 FALSE -1.269828568 0.391513399 0.014645094 0.01764759 0.02266267 -0.672262564 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p71337.ar.61b00 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_61b0022869eb ar-61b00 NA NA NA IMmotion150-p71337 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 106 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p71337 IMmotion150 10 FALSE FALSE 0.523558635 -0.269212992 0.928393929 1.022317755 -1.14349713 FALSE -0.822972385 0.523558635 0.059119239 -0.054388896 0.05834161 -0.995820685 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p71382.ar.b68f5 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_b68f5e92d6fe ar-b68f5 NA p71382 NA IMmotion150-p71382 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 836.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p71382 IMmotion150 11 FALSE TRUE -0.288205813 0.522348368 0.634469299 -0.669173738 -0.043041474 FALSE 0.349832593 -0.288205813 -0.027829001 -0.063521193 0.046094336 -0.12184334 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p71388.ar.986de RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_986de34cd15b ar-986de NA p71388 NA IMmotion150-p71388 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 1005 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p71388 IMmotion150 11 FALSE FALSE 1.304072246 1.049016915 0.382914513 0.599304628 0.752506165 TRUE 1.304072246 -1.606335632 -0.141063656 -0.0230874 -0.071468135 0.765679989 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p71390.ar.6e278 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_6e27821ce9a9 ar-6e278 NA p71390 NA IMmotion150-p71390 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 873.0000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p71390 IMmotion150 11 FALSE TRUE -0.457630078 -0.171760869 0.444493362 1.779287631 -1.467457947 FALSE 0.167318496 -0.457630078 -0.061040108 0.011696735 -0.01880186 -0.631692157 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p71514.ar.e7bfc RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e7bfc6587511 ar-e7bfc NA p71514 NA IMmotion150-p71514 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 253 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p71514 IMmotion150 10 FALSE TRUE -1.161897022 -0.17112731 0.625755265 -0.093428197 0.057753666 FALSE -0.188679934 -1.161897022 -0.090561137 -0.121524596 0.022006477 0.025447531 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p71570.ar.c122d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_c122d7b796c9 ar-c122d NA p71570 NA IMmotion150-p71570 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 347.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p71570 IMmotion150 10 FALSE TRUE -0.946312452 0.46837692 0.729065709 -0.541141334 -0.256481778 FALSE -0.968087493 -0.946312452 -0.039629452 -0.100994197 -0.016893401 -0.053983321 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p72473.ar.24ab7 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_24ab7fecc92e ar-24ab7 NA p72473 NA IMmotion150-p72473 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 840.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p72473 IMmotion150 10 FALSE FALSE 0.497133753 1.321070803 0.699463207 0.647795697 2.267202653 TRUE 0.497133753 -1.989206116 -0.122313353 -0.13981981 -0.055680707 1.550303354 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p72915.ar.60840 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_60840e680dae ar-60840 NA NA NA IMmotion150-p72915 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 0 0.999999986 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p72915 IMmotion150 8 FALSE FALSE 0.633841585 -0.121563463 0.580866052 -0.109259328 -1.397009965 FALSE -0.342106291 0.633841585 0.031740032 -0.014357539 0.074927588 -1.168876188 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p73074.ar.379fe RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_379fe8924c51 ar-379fe NA p73074 NA IMmotion150-p73074 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p73074 IMmotion150 11 FALSE FALSE 0.690046127 -0.145134493 0.245758333 0.28983106 -0.59958892 FALSE 0.776129258 0.690046127 -0.022777018 0.116772712 0.015803453 -0.148596956 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p73444.ar.3465e RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_3465edcff193 ar-3465e NA p73444 NA IMmotion150-p73444 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 586.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p73444 IMmotion150 10 FALSE TRUE -0.510434504 0.619949023 0.34588828 0.078637942 1.675447626 FALSE 0.911043252 -0.510434504 -0.057362937 0.041907182 -0.04251578 0.676888592 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p73644.ar.34124 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_34124f34502c ar-34124 NA p73644 NA IMmotion150-p73644 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 38.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p73644 IMmotion150 11 FALSE TRUE -0.004373021 -0.30221280700000003 0.341280638 0.71053359 -0.640733423 FALSE -0.009703374 -0.004373021 -0.071596117 0.127319295 -0.049762541 -0.661544098 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p74056.ar.e60f3 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e60f303da761 ar-e60f3 NA NA NA IMmotion150-p74056 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 415 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p74056 IMmotion150 10 FALSE FALSE 1.098521119 0.052483091 0.435455325 0.572282477 0.788662353 TRUE 1.098521119 -0.716660162 -0.070642174 -0.019140372 -0.009726677 0.6430812 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p75429.ar.a2056 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a2056a806a04 ar-a2056 NA p75429 NA IMmotion150-p75429 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 80.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p75429 IMmotion150 8 TRUE FALSE 1.907822018 -1.42095786 0.291172551 -0.936562492 -1.936982337 FALSE -0.717065625 1.907822018 0.14342182 0.108505045 0.042051819 -1.495797593 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p75903.ar.ea05a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_ea05a3f48c6d ar-ea05a NA p75903 NA IMmotion150-p75903 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 63 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p75903 IMmotion150 9 FALSE TRUE -0.612446092 0.466216251 0.742040322 -0.408636754 0.443698114 FALSE -0.684656909 -0.612446092 -0.012331594 -0.097544569 0.002644167 0.225828408 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p76620.ar.e3505 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e35053dd9ba3 ar-e3505 NA p76620 NA IMmotion150-p76620 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 163 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p76620 IMmotion150 11 FALSE FALSE 1.408104738 0.457924141 0.295652036 1.210139052 0.803493328 TRUE 1.408104738 -0.129622517 -0.058169885 0.067481426 -0.014283217 0.718982939 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p76802.ar.cbba5 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_cbba55040ad2 ar-cbba5 NA p76802 NA IMmotion150-p76802 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p76802 IMmotion150 11 FALSE FALSE 1.176433241 1.495312103 0.44059501 1.098568159 2.113012993 TRUE 1.176433241 -1.497108309 -0.074241385 -0.061159263 -0.089458655 1.680408814 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p77021.ar.244e0 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_244e0982c14b ar-244e0 NA p77021 NA IMmotion150-p77021 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.00000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p77021 IMmotion150 12 FALSE TRUE -0.204145782 1.42186395 0.697904246 1.343898115 0.298878581 TRUE -0.204145782 -1.000614828 0.038890946 -0.140330453 -0.068199081 0.564732192 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p77103.ar.5a00b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_5a00b6174191 ar-5a00b NA p77103 NA IMmotion150-p77103 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 591.9999999 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p77103 IMmotion150 8 FALSE FALSE 0.344507234 -0.854666012 0.67224358 -0.857876023 -1.284009642 FALSE -0.793053605 0.344507234 0.087200361 -0.117253027 0.064455819 -0.956415462 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p77236.ar.c51eb RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c51eba58b4ea ar-c51eb NA p77236 NA IMmotion150-p77236 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 344 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p77236 IMmotion150 12 FALSE TRUE -0.291983123 -0.084122565 0.54565058 0.97402203 -0.761344235 FALSE -0.148480192 -0.291983123 -0.07165734 0.018151551 0.016787131 -0.32186507600000003 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p77592.ar.348b3 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_348b3bdedf07 ar-348b3 NA p77592 NA IMmotion150-p77592 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 926.0000001 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p77592 IMmotion150 10 FALSE TRUE -0.161391266 -0.403219091 0.8574984 0.736172194 1.861056389 TRUE -0.161391266 0.429833064 0.069040401 -0.02966368 0.014663577 1.178971573 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p77606.ar.73bce RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_73bcec4c7ced ar-73bce NA p77606 NA IMmotion150-p77606 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 163 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p77606 IMmotion150 9 FALSE FALSE 0.009761538 -0.592728196 0.234022273 -0.274165291 -0.977847725 FALSE -0.220467802 0.009761538 0.006107931 -0.022126035 0.017555068 -1.055966262 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p77642.ar.cbdf8 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_cbdf805e0aed ar-cbdf8 NA p77642 NA IMmotion150-p77642 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 253 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p77642 IMmotion150 9 FALSE FALSE 0.099716978 -0.180019878 0.536704286 0.674841099 -0.772615331 FALSE 0.662470736 0.099716978 -0.060080757 0.059001057 0.024524468 -0.147681851 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p77682.ar.10061 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_100617625aa4 ar-10061 NA NA NA IMmotion150-p77682 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 337.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p77682 IMmotion150 9 FALSE FALSE 0.234648882 0.174559097 0.829434403 -0.235191936 0.451896046 FALSE -0.40250072 0.234648882 0.042538324 -0.019648324000000002 0.003550613 0.143800067 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p77957.ar.88277 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_88277ea7c3ef ar-88277 NA NA NA IMmotion150-p77957 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 83.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p77957 IMmotion150 12 FALSE TRUE -0.087549296 1.041863734 0.854886227 1.512251506 1.215197698 TRUE -0.087549296 -2.982506192 -0.11103299 -0.263754488 -0.092912196 1.397738631 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p78200.ar.d4750 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d475012f89b7 ar-d4750 NA NA NA IMmotion150-p78200 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 577 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p78200 IMmotion150 11 FALSE FALSE 0.702498544 1.344831266 0.369421208 0.695478949 2.020305061 TRUE 0.702498544 -1.376437454 0.00513241 -0.186456286 -0.040541417 1.843879215 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p78532.ar.ec859 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_ec859fb50543 ar-ec859 NA p78532 NA IMmotion150-p78532 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85.99999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p78532 IMmotion150 10 FALSE FALSE 0.536568948 -1.544756123 0.771129636 -1.053131494 -1.109521054 FALSE 0.017610186 0.536568948 -0.053120877 0.09341746 0.050742689 -0.907463518 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p78631.ar.e9937 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e99373c50be5 ar-e9937 NA p78631 NA IMmotion150-p78631 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 167 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p78631 IMmotion150 9 FALSE FALSE 0.792085689 -0.657675417 0.674758892 -0.822374949 -0.611845144 FALSE -0.249266743 0.792085689 0.005923511 0.081819214 0.033018706 -0.452859206 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p78812.ar.68e58 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_68e58a042576 ar-68e58 NA p78812 NA IMmotion150-p78812 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 90 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p78812 IMmotion150 10 FALSE FALSE 1.071421751 -0.565425511 0.397649165 -0.111009639 -0.598933965 FALSE -0.433861094 1.071421751 0.137091697 0.006180701 0.019578274 -0.287563143 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p78903.ar.d309d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d309d29f39e3 ar-d309d NA p78903 NA IMmotion150-p78903 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 36.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p78903 IMmotion150 10 FALSE FALSE 0.057463169 -1.205542073 0.520993565 -0.230820028 -1.067388806 FALSE -0.760794408 0.057463169 0.023523363 -0.05235825 0.034184056 -1.285193726 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p79175.ar.f553e RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_f553eedd7cbd ar-f553e NA p79175 NA IMmotion150-p79175 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 345 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p79175 IMmotion150 11 FALSE FALSE 1.8545840200000001 -0.118132588 0.41800555 -0.716941102 -0.916814656 FALSE -0.221294746 1.8545840200000001 0.084441029 0.176412978 0.025127211 -0.587038194 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p79951.ar.09e55 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_09e558977f02 ar-09e55 NA NA NA IMmotion150-p79951 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 71.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p79951 IMmotion150 13 FALSE FALSE 0.01949486 0.697762499 0.660818443 1.402568399 0.65633222 TRUE 0.01949486 -1.11763698 -0.021170883 -0.088647875 -0.066009954 0.773704213 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p79994.ar.565e9 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_565e91a1435b ar-565e9 NA NA NA IMmotion150-p79994 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 85 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p79994 IMmotion150 8 FALSE FALSE 0.140813185 -0.303659664 0.474364699 -0.404827993 -0.753025465 FALSE 0.250086025 0.140813185 -0.032673626 0.047854826 0.00976238 -0.604711894 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p80528.ar.6a28d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_6a28da4d6643 ar-6a28d NA p80528 NA IMmotion150-p80528 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 87.99999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p80528 IMmotion150 12 FALSE FALSE 0.353970495 -0.655036603 0.779787976 -1.063003667 -0.373890931 FALSE -0.152508771 0.353970495 -0.032970525 0.04172023 0.04804404 -0.577958769 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p80740.ar.0d631 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_0d6313fc74fe ar-0d631 NA p80740 NA IMmotion150-p80740 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 81 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p80740 IMmotion150 9 FALSE FALSE 0.835255825 0.571807632 0.614141986 -0.269344578 0.368053327 FALSE -1.029777855 0.835255825 0.099255631 -0.005325282 0.017925489 0.355251391 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p81271.ar.ef040 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_ef04087dcfaa ar-ef040 NA p81271 NA IMmotion150-p81271 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 237 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p81271 IMmotion150 11 FALSE FALSE 0.950821507 1.18791031 0.256997901 1.337198079 0.537528943 TRUE 0.950821507 -0.462072924 -0.012038511 -0.02021991 -0.029954309 0.651793168 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p81830.ar.4876d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4876d573c0a5 ar-4876d NA p81830 NA IMmotion150-p81830 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 421.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p81830 IMmotion150 13 FALSE FALSE 1.40144008 -0.162467222 0.508605895 1.034517197 0.555625537 TRUE 1.40144008 -1.533308739 -0.141091383 -0.103515588 0.025446628 0.635157179 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p82037.ar.d9253 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d92534e641bd ar-d9253 NA NA NA IMmotion150-p82037 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 445.9999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p82037 IMmotion150 10 FALSE FALSE 0.848098966 0.867616248 0.643641948 -0.380709635 2.358708685 TRUE 0.848098966 -2.357415749 -0.120714093 -0.216722471 -0.026152636 1.970084455 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p82438.ar.00760 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_007603faf7a3 ar-00760 NA NA NA IMmotion150-p82438 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 81 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p82438 IMmotion150 10 TRUE FALSE 1.047514099 -1.355668253 0.589180797 -0.431274803 -0.976681531 FALSE -0.77310188 1.047514099 0.062047644 0.141962586 -0.040076849 -0.78015162 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p82563.ar.e3ba6 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e3ba6577b939 ar-e3ba6 NA NA NA IMmotion150-p82563 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 326 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p82563 IMmotion150 10 FALSE TRUE -0.448674841 0.295139489 0.796391259 -1.062461111 0.596946944 TRUE -0.448674841 0.244286011 0.023939789 -0.032464545 0.038492987 0.749359649 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p82773.ar.35d10 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_35d1053d7c54 ar-35d10 NA p82773 NA IMmotion150-p82773 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 300 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p82773 IMmotion150 8 FALSE FALSE 1.45539549 0.049402627 0.306249506 -1.057832094 -0.424951205 FALSE -0.223132386 1.45539549 0.036485508 0.120459794 0.070320912 -0.41753748 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p82892.ar.05ee2 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_05ee22c11ced ar-05ee2 NA p82892 NA IMmotion150-p82892 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 87.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p82892 IMmotion150 11 FALSE FALSE 0.750617692 -0.244689655 0.412976586 0.085019636 0.130202459 TRUE 0.750617692 -0.420762058 -0.066632579 0.123390181 -0.102361936 0.474898038 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p83356.ar.c889c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c889cb234bf4 ar-c889c NA p83356 NA IMmotion150-p83356 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 81 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p83356 IMmotion150 11 FALSE FALSE 1.256242261 -0.573356591 0.345234392 0.177235692 -0.848327439 FALSE 0.324457748 1.256242261 0.084453165 0.135747446 -0.020068932 -0.638558513 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p83425.ar.25f19 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_25f190c1b240 ar-25f19 NA p83425 NA IMmotion150-p83425 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 92 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p83425 IMmotion150 10 FALSE FALSE 2.042454793 -0.630436233 0.243677161 -2.086797609 -0.00691719 FALSE -0.264793412 2.042454793 0.125013463 0.133608813 0.054011368 -0.430650423 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p83724.ar.0f26e RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_0f26e5b925cf ar-0f26e NA p83724 NA IMmotion150-p83724 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 994 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p83724 IMmotion150 11 FALSE FALSE 0.831785584 -0.417014549 0.591105728 1.190445191 -0.176910843 FALSE -0.323842679 0.831785584 -0.02281352 0.21620061 -0.056701585 -0.192008608 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p84637.ar.a617b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_a617bd24f7e4 ar-a617b NA p84637 NA IMmotion150-p84637 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 163 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p84637 IMmotion150 11 FALSE FALSE 1.443130971 1.222994501 0.241860916 0.669802121 0.505932393 TRUE 1.443130971 -1.197110044 -0.091261684 -0.019167637 -0.059855381 0.921030847 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p84792.ar.cf28c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_cf28cc7fcd22 ar-cf28c NA NA NA IMmotion150-p84792 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 103 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p84792 IMmotion150 10 FALSE FALSE 0.63463576 -2.297889242 0.88213977 -2.026786866 -1.640148734 FALSE -0.609214506 0.63463576 0.039143464 -0.043404398 0.092653299 -1.897012508 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p84809.ar.83d87 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_83d87c60c4bc ar-83d87 NA p84809 NA IMmotion150-p84809 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 49.00000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p84809 IMmotion150 12 FALSE FALSE 0.094145678 1.630114 0.746042338 1.905692603 2.21403911 TRUE 0.094145678 -1.994562084 -0.115305366 -0.165104921 -0.029921708 1.830721307 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p84815.ar.e2bca RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e2bca1a5dc61 ar-e2bca NA p84815 NA IMmotion150-p84815 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 212 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p84815 IMmotion150 10 FALSE TRUE -2.186396879 -0.23161733 0.68715075 -1.191318968 -0.225209282 FALSE 0.981902751 -2.186396879 -0.129756751 -0.245329912 0.018842714 0.27520929 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p84816.ar.4c97c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_4c97c08cc478 ar-4c97c NA NA NA IMmotion150-p84816 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 511.0000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p84816 IMmotion150 11 FALSE TRUE -0.075092207 0.76373979 0.485329197 0.440026326 0.922048311 TRUE -0.075092207 -0.990306811 -0.02286758 -0.083353315 -0.050310018 1.054770264 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p84835.ar.0f59f RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_0f59fcddf5aa ar-0f59f NA p84835 NA IMmotion150-p84835 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 163 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p84835 IMmotion150 6 FALSE TRUE -0.615572227 -1.079911207 0.284389829 1.332140238 -1.905602732 FALSE 0.861801647 -0.615572227 -0.071033469 -0.053106636 0.029877932 -2.143985282 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p84878.ar.4428f RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_4428f8c9acc5 ar-4428f NA NA NA IMmotion150-p84878 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 127 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p84878 IMmotion150 10 FALSE TRUE -1.090588758 0.028175688 0.266865086 0.031138528 1.191088663 FALSE 0.057458886 -1.090588758 -0.048220774 -0.168156054 0.043298742 0.434011516 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p85141.ar.bc386 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_bc3869a7e26a ar-bc386 NA p85141 NA IMmotion150-p85141 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 1 251 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p85141 IMmotion150 11 FALSE FALSE 0.113847222 0.540194363 0.675902791 0.169003001 1.001908066 FALSE -0.334322024 0.113847222 0.064535337 -0.004666013 -0.038541788 0.524631355 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p86072.ar.eda1c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_eda1c235e646 ar-eda1c NA NA NA IMmotion150-p86072 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 421.0000001 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p86072 IMmotion150 10 FALSE TRUE -0.729318544 -0.069332223 0.450345384 0.973441439 -1.191918667 FALSE 0.717119412 -0.729318544 -0.116976209 -0.004687481 0.017165047 -0.284234866 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p87325.ar.e7c59 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e7c5993e83b4 ar-e7c59 NA NA NA IMmotion150-p87325 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 255 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p87325 IMmotion150 11 FALSE TRUE -0.042388787 -0.584338636 0.211734213 1.934334277 -1.155828984 FALSE 0.486974253 -0.042388787 -0.072609609 0.205089419 -0.119253821 -0.661696986 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p87381.ar.053ea RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_053ea1347beb ar-053ea NA p87381 NA IMmotion150-p87381 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 355.9999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p87381 IMmotion150 9 FALSE FALSE 0.319577253 -0.596656652 0.583934942 -0.548987656 -0.73224955 FALSE -0.568466929 0.319577253 -0.023317388 0.003342685 0.068598001 -0.686071042 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p87557.ar.2060b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_2060b7779160 ar-2060b NA p87557 NA IMmotion150-p87557 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 163 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p87557 IMmotion150 9 FALSE FALSE 1.714813339 -0.619704984 0.242477848 -1.358189431 -0.286890609 FALSE -0.638279552 1.714813339 0.166067872 0.098293587 -0.006904038 -0.293344522 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p87690.ar.e7a69 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e7a69d932116 ar-e7a69 NA NA NA IMmotion150-p87690 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 314.0000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p87690 IMmotion150 10 TRUE FALSE 1.430813012 -1.030843151 0.475980249 -0.855122138 -1.231077359 FALSE 0.457921247 1.430813012 0.044332431 0.130956935 0.055402031 -0.860413841 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p88355.ar.06384 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_06384df3ade9 ar-06384 NA NA NA IMmotion150-p88355 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 812 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p88355 IMmotion150 10 FALSE TRUE -0.053192156 -0.253489294 0.208418129 -0.262095264 -0.478631865 FALSE 0.9512235 -0.053192156 -0.045250983 0.047904853 0.011921326 -0.203164596 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p89062.ar.97923 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_97923a93a4a2 ar-97923 NA NA NA IMmotion150-p89062 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 0 0.999999986 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p89062 IMmotion150 8 FALSE FALSE 0.905002147 -0.42388217 0.701952779 -0.555399634 -1.255556483 FALSE -0.698626598 0.905002147 0.055477748 0.013916147 0.063028101 -1.068443166 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p89981.ar.824ee RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_824ee3cf7a82 ar-824ee NA p89981 NA IMmotion150-p89981 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 771.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p89981 IMmotion150 10 FALSE FALSE 0.874549821 1.315183924 0.422888446 1.431067083 0.496013658 TRUE 0.874549821 -0.805314721 -0.038905418 0.00639095 -0.07820444 0.876672182 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p90170.ar.91593 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_9159323bed9c ar-91593 NA p90170 NA IMmotion150-p90170 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 471 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p90170 IMmotion150 8 TRUE FALSE 1.325403106 -1.139644113 0.181888077 -0.792331954 -1.439029032 FALSE -0.280274004 1.325403106 0.071947524 0.053444466 0.077769461 -1.469168942 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p90215.ar.05e00 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_05e004a1302c ar-05e00 NA p90215 NA IMmotion150-p90215 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 89.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p90215 IMmotion150 10 FALSE TRUE -0.882407833 -0.829802081 0.694299417 -0.641529093 -0.851199658 FALSE -0.456371937 -0.882407833 -0.007747829 -0.131069822 -0.004723526 -0.825084039 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p90410.ar.aad5b RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_aad5b6041aa1 ar-aad5b NA p90410 NA IMmotion150-p90410 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 42.00000001 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p90410 IMmotion150 11 FALSE FALSE 1.903443343 1.56209023 0.48276245 0.511573116 2.614743868 TRUE 1.903443343 -1.685167716 -0.117581463 -0.010372704 -0.115134409 2.385108108 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p90681.ar.3044c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3044cf179b61 ar-3044c NA NA NA IMmotion150-p90681 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 87.99999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p90681 IMmotion150 11 FALSE FALSE 1.053027574 1.442993045 0.344850628 0.407532548 1.775026475 TRUE 1.053027574 -1.030301353 -0.064501223 -0.03568496 -0.047277704 1.753350711 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p90969.ar.eb279 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_eb279c757174 ar-eb279 NA p90969 NA IMmotion150-p90969 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 90 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p90969 IMmotion150 9 TRUE FALSE 2.05249949 -1.282004979 0.222246286 -2.074207758 -1.095231164 FALSE -0.19852788 2.05249949 0.097015921 0.176356766 0.045192471 -1.182758108 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p91058.ar.c92b5 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c92b5732f38e ar-c92b5 NA NA NA IMmotion150-p91058 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 103 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p91058 IMmotion150 8 TRUE FALSE 1.616115861 -1.115155094 0.211655283 -1.324589494 -1.544670281 FALSE -0.970003201 1.616115861 0.090194484 0.117689011 0.036718444 -0.599662177 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p91392.ar.c1e57 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c1e578afd50d ar-c1e57 NA NA NA IMmotion150-p91392 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 415 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p91392 IMmotion150 8 FALSE FALSE 0.79759132 -0.656318665 0.826715154 0.759846953 -0.199028662 FALSE -0.884843789 0.79759132 0.071540815 0.021805788 0.017271756 -0.324341175 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p91851.ar.3e2a3 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3e2a3abd85ad ar-3e2a3 NA p91851 NA IMmotion150-p91851 KIRC NA Kidney NA NA TRUE IV NA NA NA NA NA NA NA 0 67.99999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p91851 IMmotion150 9 FALSE TRUE -0.451829782 0.652847259 0.33809199 0.004024748 0.14334045 FALSE -0.448554399 -0.451829782 -0.017919674 -0.01264928 -0.034381258 0.060469918 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p91890.ar.3f780 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_3f78044299b5 ar-3f780 NA NA NA IMmotion150-p91890 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 588.9999999 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p91890 IMmotion150 8 FALSE FALSE 0.847173013 -1.109092932 0.612252218 -0.869615833 -1.134613981 FALSE -0.689256073 0.847173013 0.05355358 0.026739503 0.0410328 -1.266455608 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p91915.ar.d7992 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d7992d300a27 ar-d7992 NA NA NA IMmotion150-p91915 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 174 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p91915 IMmotion150 11 FALSE FALSE 0.585883948 0.3319905 0.441102703 -1.1014801 0.531330252 FALSE -1.519462903 0.585883948 0.129458746 -0.01336292 -0.033199085 0.293714366 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p92137.ar.a61f4 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_a61f41851ff4 ar-a61f4 NA p92137 NA IMmotion150-p92137 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE NA NA NA 0 596 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p92137 IMmotion150 10 FALSE FALSE 0.397157073 -0.84452438 0.785238673 1.842145338 -0.999741947 FALSE -1.71496651 0.397157073 0.007948607 -0.042815296 0.081479951 -0.876009145 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p92156.ar.acf8a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_acf8a1f1f3c4 ar-acf8a NA p92156 NA IMmotion150-p92156 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 83 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p92156 IMmotion150 10 FALSE FALSE 1.138861709 -0.258995477 0.662244887 -1.286931901 -0.338491743 FALSE -0.686963047 1.138861709 0.041872998 0.093251388 0.032164384 -0.323358448 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p92869.ar.e2339 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_e2339f26d595 ar-e2339 NA NA NA IMmotion150-p92869 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 87.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p92869 IMmotion150 8 FALSE TRUE -0.658231624 -0.127909326 0.447268445 0.459405714 0.333828952 FALSE 0.196085868 -0.658231624 -0.00840639 -0.081014502 -0.008979299 0.092422221 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p93090.ar.65a4c RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_65a4c306966b ar-65a4c NA NA NA IMmotion150-p93090 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 249 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p93090 IMmotion150 9 FALSE FALSE 0.9049657 -0.918699096 0.73885847 0.917289005 -1.392564981 FALSE -1.290769284 0.9049657 0.059686136 0.017341447 0.050992536 -1.209982542 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p93939.ar.d03c1 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_d03c1a6beaa3 ar-d03c1 NA NA NA IMmotion150-p93939 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 78.99999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p93939 IMmotion150 11 FALSE TRUE -0.353798529 -0.461797598 0.609824494 -1.447376339 0.233692389 FALSE 0.574565829 -0.353798529 -0.091853224 0.064012456 -0.022061915 0.397960739 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p94113.ar.dd107 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_dd107b93b6cf ar-dd107 NA p94113 NA IMmotion150-p94113 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 43 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p94113 IMmotion150 11 FALSE FALSE 0.688219614 1.614463174 0.512563824 0.104355022 2.700441962 TRUE 0.688219614 -1.196198996 0.015625187 -0.140132367 -0.064899297 2.330539124 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p96212.ar.544d1 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_544d111ac1d4 ar-544d1 NA p96212 NA IMmotion150-p96212 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 170 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p96212 IMmotion150 11 FALSE TRUE -0.13338092 0.321550759 0.775255626 0.190346872 -0.156909481 FALSE 0.318108882 -0.13338092 -0.014519421 -0.018361578 0.010128596 0.019697257 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p96831.ar.c6d32 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c6d329529465 ar-c6d32 NA p96831 NA IMmotion150-p96831 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 500.9999999 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p96831 IMmotion150 11 FALSE TRUE -0.197457435 1.17942939 0.770269403 0.408597555 1.489033074 TRUE -0.197457435 -1.78412589 -0.085686092 -0.174432774 -0.023385045 1.013853473 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p97176.ar.62eac RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_62eac79b3a04 ar-62eac NA NA NA IMmotion150-p97176 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 1 679.9999999 1 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p97176 IMmotion150 11 FALSE FALSE 0.40674514 1.143048449 0.336928081 -0.879579496 0.855847337 TRUE 0.40674514 0.143256042 -0.058342382 0.108740282 -0.018424816 0.607234026 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p97280.ar.49afc RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_49afcfbb6d5c ar-49afc NA p97280 NA IMmotion150-p97280 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 164 0 NA NA NA NA NA NA NA NA TRUE None None None None None Sunitinib None FALSE FALSE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p97280 IMmotion150 12 FALSE FALSE 1.435569021 0.119528647 0.208314609 1.041247817 1.15988814 TRUE 1.435569021 -1.11361388 -0.235691851 0.088547409 -6.7e-4 0.81067717 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p97816.ar.1270d RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA wo29074_ngs_rna_wts_rnaaccess_1270d3da369c ar-1270d NA p97816 NA IMmotion150-p97816 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE NA NA NA 0 247 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE None None FALSE FALSE FALSE FALSE NA NA NA NA NA NA NA p97816 IMmotion150 11 FALSE FALSE 0.703713163 0.054419415 0.256941856 0.976670783 0.229363014 TRUE 0.703713163 0.070977105 0.017479881 0.057761952 -0.069523902 0.675462578 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p97909.ar.c7295 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_c7295d71952f ar-c7295 NA NA NA IMmotion150-p97909 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 81 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p97909 IMmotion150 9 TRUE FALSE 1.862696861 -1.63923851 0.404062969 -1.163431253 -2.190909405 FALSE -0.572977801 1.862696861 0.120863211 0.112156321 0.052700538 -1.711220702 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p98637.ar.bcb5a RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_bcb5a3b9ccce ar-bcb5a NA p98637 NA IMmotion150-p98637 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 0 165 0 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p98637 IMmotion150 11 FALSE FALSE 0.42833763 2.164648559 0.582903441 1.119582261 2.440233134 TRUE 0.42833763 -1.269425663 -0.01284204 -0.131472497 -0.060643163 2.06021414 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p98987.ar.12652 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_126525a77fdf ar-12652 NA p98987 NA IMmotion150-p98987 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE NA NA NA 1 169 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Bev None TRUE TRUE FALSE FALSE TRUE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p98987 IMmotion150 10 FALSE FALSE 0.369505277 -0.133295189 0.616916031 0.300975529 -0.974985471 FALSE -1.459243685 0.369505277 0.055778332 -0.01187053 0.006396183 -0.926746374 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
IMmotion150.p99039.ar.ef7b7 RNA-Seq RNA NA NA NA FALSE Pre NA FALSE NA 50 NA HiSeq 2500 NA TruSeq RNA Exome (RNA access) NA NA NA WO29074_ngs_rna_targrna_rnaaccess_ef7b7fa4fdce ar-ef7b7 NA NA NA IMmotion150-p99039 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE NA NA NA 1 51.00000001 1 NA NA NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 None None TRUE TRUE FALSE FALSE FALSE FALSE Tumorectomy None TRUE FALSE FALSE FALSE NA NA NA NA NA NA NA p99039 IMmotion150 10 FALSE FALSE 0.315281521 -1.220691617 0.829238391 -0.022994271 -1.368952466 FALSE -1.2367396 0.315281521 -0.041471594 0.049108828 0.036835394 -1.495873491 IMmotion150_Kidney 0 0 0 0 1 0 0 0 0 0 0 0 0 ALL
Miao_Science_2018.p0005.ar.201 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450201 ar-201 NA p0005 Broad Institute Miao_Science_2018-p0005 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 277 0 1 168 1 62 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0005 Miao_Science_2018 10 FALSE TRUE -0.486333442 -0.243495773 0.908799383 0.344470983 -1.066737593 FALSE -0.511767651 -0.486333442 -0.037344918 -0.067241434 0.015980916 -0.612510409 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0007.ar.200 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450200 ar-200 NA p0007 Broad Institute Miao_Science_2018-p0007 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 448 0 0 448 0 60 Male NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 Unknown None TRUE TRUE TRUE TRUE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p0007 Miao_Science_2018 9 FALSE FALSE 2.217810352 -0.356705119 0.30091506 -1.585670126 -0.547783532 FALSE -0.563340721 2.217810352 0.177130978 0.137131101 0.027151457 -0.613423659 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0010.ar.191 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450191 ar-191 NA p0010 Broad Institute Miao_Science_2018-p0010 KIRC NA Kidney NA NA TRUE IV Complete Response TRUE FALSE TRUE 0 454 0 0 454 0 51 Male NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 Unknown None TRUE TRUE TRUE TRUE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p0010 Miao_Science_2018 9 FALSE TRUE -0.052696113 0.146956832 0.441543735 -0.390446331 0.786285315 TRUE -0.052696113 -0.072596918 0.089224045 -0.096010293 -0.009599251 0.469893062 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0011.ar.202 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450202 ar-202 NA p0011 Broad Institute Miao_Science_2018-p0011 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 327 1 1 205 1 40 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p0011 Miao_Science_2018 12 FALSE FALSE 0.669872548 0.720829466 0.460771316 -9.27e-4 1.575703753 TRUE 0.669872548 -1.461506826 -0.092216022 -0.129350435 -0.001980867 1.294175859 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0012.ar.206 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450206 ar-206 NA p0012 Broad Institute Miao_Science_2018-p0012 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 581 0 1 61 1 67 Male NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Unknown None TRUE TRUE FALSE FALSE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p0012 Miao_Science_2018 12 FALSE TRUE -0.233013993 0.267673889 0.63341735 2.810326251 -0.370828348 FALSE -0.36547614 -0.233013993 -0.04725574 0.037677659 -0.017895569 -0.389855819 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0013.ar.204 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450204 ar-204 NA p0013 Broad Institute Miao_Science_2018-p0013 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 399 0 0 399 0 66 Male NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 Unknown None TRUE TRUE TRUE TRUE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p0013 Miao_Science_2018 11 FALSE FALSE 0.73445476 -0.170158196 0.16004255 -0.293624342 -0.415451126 FALSE 0.25110895 0.73445476 -0.021635681 0.21008448 -0.065138237 -0.081488297 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0014.ar.199 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450199 ar-199 NA p0014 Broad Institute Miao_Science_2018-p0014 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 433 0 0 433 0 68 Female NA NA NA NA NA NA TRUE Ipi + Nivo Nivo Ipi CTLA4 + PD1 CTLA4 + PD1 Unknown None TRUE TRUE TRUE TRUE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p0014 Miao_Science_2018 9 FALSE FALSE 0.177996306 -0.532306553 0.350741646 -0.631754689 -0.264087501 FALSE 1.225631858 0.177996306 -0.014847641 0.071912953 -0.020526824 -0.097458088 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0015.ar.194 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450194 ar-194 NA p0015 Broad Institute Miao_Science_2018-p0015 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 814 1 1 105 1 71 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0015 Miao_Science_2018 9 FALSE FALSE 1.183789247 -0.403882593 0.372385972 -0.520275517 -0.970802091 FALSE -0.905119718 1.183789247 0.026131184 0.101464862 0.054496541 -1.041938456 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0018.ar.195 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450195 ar-195 NA p0018 Broad Institute Miao_Science_2018-p0018 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE 1 1189 1 1 672 1 69 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0018 Miao_Science_2018 8 FALSE TRUE -0.70815209 0.424922269 0.738644308 -0.68706615 0.265698226 FALSE -0.537842417 -0.70815209 -0.020195571 -0.094587317 -0.003896725 0.10537721 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0019.ar.196 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450196 ar-196 NA p0019 Broad Institute Miao_Science_2018-p0019 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 230 0 1 220 1 60 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0019 Miao_Science_2018 9 FALSE FALSE 1.997210119 -0.740849209 0.3703847 0.028084977 -0.415543741 FALSE -0.291608037 1.997210119 0.12586217 0.1817872 0.003086802 -0.322406544 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0020.ar.193 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450193 ar-193 NA p0020 Broad Institute Miao_Science_2018-p0020 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 203 0 1 47 1 64 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0020 Miao_Science_2018 13 FALSE FALSE 1.004517005 1.667103088 0.620681775 1.96785389 1.60628363 TRUE 1.004517005 -2.916835445 -0.147010137 -0.234129282 -0.07061378 1.779665831 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0021.ar.190 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450190 ar-190 NA p0021 Broad Institute Miao_Science_2018-p0021 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 185 1 1 68 1 63 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0021 Miao_Science_2018 12 FALSE FALSE 0.0450985 0.299613667 0.744879671 -0.106589607 0.66904186 FALSE -0.697502552 0.0450985 0.047160457 -0.037748988 -0.009964389 0.191226074 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0022.ar.198 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450198 ar-198 NA p0022 Broad Institute Miao_Science_2018-p0022 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 0 247 0 1 80 1 66 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0022 Miao_Science_2018 11 FALSE FALSE 1.685431934 -0.260436528 0.509362177 -0.541731693 -0.016519886 FALSE -0.246837991 1.685431934 0.05127798 0.146689093 0.059793643 0.059666149 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0023.ar.197 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450197 ar-197 NA p0023 Broad Institute Miao_Science_2018-p0023 KIRC NA Kidney NA NA TRUE IV Partial Response TRUE FALSE TRUE 0 637 0 0 637 0 69 Male NA NA NA NA NA NA TRUE Atezo Atezo None PD1 PD-L1 Unknown None TRUE TRUE FALSE FALSE NA FALSE None None FALSE FALSE FALSE FALSE Unknown Unknown NA NA NA NA NA p0023 Miao_Science_2018 10 FALSE FALSE 1.026855126 -0.431007748 0.211387929 -1.031479503 -0.42870263 FALSE 0.731906031 1.026855126 0.017009043 0.10089228 0.04091546 -0.495316465 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0024.ar.192 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450192 ar-192 NA p0024 Broad Institute Miao_Science_2018-p0024 KIRC NA Kidney NA NA TRUE IV Progressive Disease FALSE TRUE FALSE 1 304 1 1 41 1 52 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0024 Miao_Science_2018 10 FALSE FALSE 0.790484247 1.075473157 0.540319948 0.192272887 2.948251725 TRUE 0.790484247 -2.152058806 -0.095700481 -0.177854834 -0.060880577 2.227237682 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0025.ar.205 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450205 ar-205 NA p0025 Broad Institute Miao_Science_2018-p0025 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 1724 0 1 333 1 74 Male NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0025 Miao_Science_2018 11 FALSE FALSE 0.143758889 -0.044935927 0.466527874 0.266515286 -0.826739952 FALSE 0.829933848 0.143758889 -0.102964363 0.134074343 0.002443056 -0.254018003 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL
Miao_Science_2018.p0026.ar.203 RNA-Seq RNA Kidney NA FALSE FALSE Pre Primary Tumor FALSE TRUE NA NA HiSeq 2000 NA CitriSolv + Qiagen AllPrep DNA/RNA Mini Kit TRUE FFPE NA SRR6450203 ar-203 NA p0026 Broad Institute Miao_Science_2018-p0026 KIRC NA Kidney NA NA TRUE IV Stable Disease FALSE FALSE TRUE 0 377 0 1 171 1 70 Female NA NA NA NA NA NA TRUE Nivo Nivo None PD1 PD1 Unknown None TRUE TRUE FALSE FALSE NA FALSE Unnamed None TRUE FALSE FALSE NA Unknown Unknown NA NA NA NA NA p0026 Miao_Science_2018 9 FALSE FALSE 0.027726847 -1.418794721 0.590029405 0.180040992 -2.52806811 FALSE -0.868609583 0.027726847 0.029122592 -0.084129028 0.059019558 -2.218826126 Miao_Science_2018_Kidney 0 0 0 0 0 0 0 0 1 0 0 0 0 ALL