From 1eb447479ccd504bcf082413a0eb2bd8fd13e348 Mon Sep 17 00:00:00 2001
From: Thomas Cokelaer <cokelaer@gmail.com>
Date: Fri, 5 Apr 2024 16:39:10 +0200
Subject: [PATCH] Fixes bug in profile creation

---
 README.rst                              |  2 ++
 pyproject.toml                          |  2 +-
 sequana_pipetools/snaketools/profile.py | 14 +++++++-------
 3 files changed, 10 insertions(+), 8 deletions(-)

diff --git a/README.rst b/README.rst
index b7bc242..f4c3226 100644
--- a/README.rst
+++ b/README.rst
@@ -313,6 +313,8 @@ Changelog
 ========= ======================================================================
 Version   Description
 ========= ======================================================================
+1.0.1     * hot fix in the profile creation (regression)
+1.0.0     * Stable release
 0.17.3    * remove useless code and fix a requirement
 0.17.2    * simpler logging
 0.17.1    * remove the --use-singulariry (replaced by --use-apptainer in
diff --git a/pyproject.toml b/pyproject.toml
index ae715c7..ac8f3d3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,7 +6,7 @@ build-backend = "poetry.core.masonry.api"
 #maintainer ?#maintainer email
 [tool.poetry]
 name = "sequana_pipetools"
-version = "1.0.0"
+version = "1.0.1"
 description = "A set of tools to help building or using Sequana pipelines"
 authors = ["Sequana Team"]
 license = "BSD-3"
diff --git a/sequana_pipetools/snaketools/profile.py b/sequana_pipetools/snaketools/profile.py
index fe549d3..d17abc7 100644
--- a/sequana_pipetools/snaketools/profile.py
+++ b/sequana_pipetools/snaketools/profile.py
@@ -13,16 +13,16 @@
 def create_profile(workdir: Path, profile: str, **kwargs) -> str:
     """Create profile config in working directory."""
     try:
-        slurm_file = resources.files("sequana_pipetools.resources").joinpath(f"{profile}.yaml")
-        with open(slurm_file, "r") as fin:
-            slurm_text = fin.read()
-            slurl_text = slurm_text.format(**kwargs)
+        profile_file = resources.files("sequana_pipetools.resources").joinpath(f"{profile}.yaml")
+        with open(profile_file, "r") as fin:
+            profile_text = fin.read()
+            profile_text = profile_text.format(**kwargs)
     except AttributeError:
         # python 3.8 support for back compatibility
-        with resources.path("sequana_pipetools.resources", f"{profile}.yaml") as slurm_file:
-            slurm_text = slurm_file.read_text().format(**kwargs)
+        with resources.path("sequana_pipetools.resources", f"{profile}.yaml") as profile_file:
+            profile_text = profile_file.read_text().format(**kwargs)
 
     outfile = workdir / f".sequana/profile_{profile}" / "config.yaml"
     outfile.parent.mkdir(parents=True, exist_ok=True)
-    outfile.write_text(slurm_text)
+    outfile.write_text(profile_text)
     return f".sequana/profile_{profile}"