DESCRIPTION

Package: Alleloscope
Type: Package
Title: Allele-specific copy number genotyping for single cell sequencing data
Version: 1.0.1
Author: Chi-Yun Wu, Nancy Zhang
Maintainer: Chi-Yun Wu <chiyunwu@pennmedicine.upenn.edu>
Description: Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination), allowing for integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell. 
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports:
    Matrix,
    matrixStats,
    ggplot2, 
    stringr,
    caTools,
    pheatmap,
    cowplot,
    HiddenMarkov,
    cluster
Depends: 
    R (>= 3.6.0),
    Matrix,
    rtracklayer
biocViews: Software
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1