TSCC2 - Create pull request(s) to merge tscc/0.17.3/cpu and tscc/0.17.3/gpu into sdsc/spack repo

[mkandes]

@jerrypgreenberg has initially deployed the production Spack instances on TSCC2 --- tscc/0.17.3/cpu and tscc/0.17.3/gpu --- from a non-standard fork of the sdsc/spack repo: https://github.com/jerrypgreenberg/sdsc-tscc

[mkandes@login1 mkandes]$ cp -r /cm/shared/apps/spack/0.17.3/cpu/ ./
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/etc/spack/sdsc/tscc/0.17.3/cpu/specs/gcc@10.2.0/nohup.out' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/etc/spack/sdsc/tscc/0.17.3/cpu/specs/intel@19.1.1.217/intel-mpi@2019.10.317/nohup.out' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/etc/spack/sdsc/tscc/0.17.3/gpu/specs/gcc@10.2.0/intel-mpi@2019.10.317/nohup.out' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/etc/spack/sdsc/tscc/0.17.3/gpu/specs/gcc@8.5.0/intel-mpi@2019.10.317/nohup.out' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/etc/spack/sdsc/tscc/0.17.3/gpu/specs/gcc@9.2.0/intel-mpi@2019.10.317/nohup.out' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/etc/spack/sdsc/tscc/0.17.3/gpu/specs/nohup.out' for reading: Permission denied


cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/opt/spack/linux-rocky9-broadwell/gcc-11.2.0/matlab-2022b-tjyunced33q37kefssh5bw7o55m6vv5i/sys/ros2/glnxa64/ros2/src/gmock_vendor/include/gmock/gmock-generated-matchers.h' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/opt/spack/linux-rocky9-broadwell/gcc-11.2.0/matlab-2022b-tjyunced33q37kefssh5bw7o55m6vv5i/toolbox/dsp/dsputilities/safeEval.m' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/opt/spack/linux-rocky9-broadwell/gcc-11.2.0/matlab-2022b-tjyunced33q37kefssh5bw7o55m6vv5i/resources/dsp/ja_JP/fspecs/hphbmin/convert2specword.xml' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/opt/spack/linux-rocky9-broadwell/gcc-11.2.0/matlab-2022b-tjyunced33q37kefssh5bw7o55m6vv5i/help/driving/csh/blocks/Simulink.SLDialogSource.SubSystem.Simulation_3D_Scene_Configuration.map' for reading: Permission denied
cp: cannot open '/cm/shared/apps/spack/0.17.3/cpu/opt/spack/linux-rocky9-broadwell/gcc-11.2.0/matlab-2022b-tjyunced33q37kefssh5bw7o55m6vv5i/help/dsp/csh/blocks/dspdialogkalmankalman_filter-id-isoutputeststate.html' for reading: Permission denied
[mkandes@login1 mkandes]$ 
[mkandes@login1 mkandes]$ 
[mkandes@login1 mkandes]$ ls
cpu  spack
[mkandes@login1 mkandes]$ cd cpu/
[mkandes@login1 cpu]$ ls
bin              COPYRIGHT  LICENSE-APACHE  opt             README.md    var
CHANGELOG.md     etc        LICENSE-MIT     pyproject.toml  SECURITY.md
CONTRIBUTING.md  lib        NOTICE          pytest.ini      share
[mkandes@login1 cpu]$ git log
commit c2a5096e36f5d730150883b66eb5a722dc05d585 (HEAD -> 0.17.3, origin/HEAD, origin/0.17.3)
Author: Jerry Greenberg <jpg@login1.tscc.sdsc.edu>
Date:   Fri Aug 25 12:52:25 2023 -0700

    restrich amber cuda arch's to 60 and 75

commit a92602179c65bfbff02bd6c000399376359e6ac6
Author: Jerry Greenberg <jpg@login1.tscc.sdsc.edu>
Date:   Tue Aug 22 18:52:29 2023 -0700

    added aspera-cli and awscli gpu install scripts

commit e9c3117747d843e1993b99b683814fab49c0545c
Author: Jerry Greenberg <jpg@login1.tscc.sdsc.edu>
Date:   Tue Aug 22 18:50:28 2023 -0700

    added aspera-cli and awscli cpu install scripts

commit 9bdb30fa11920d6f6192c7e7fa9f8dfab04a8a3b
Author: Jerry Greenberg <jpg@login1.cm.cluster>
Date:   Mon Jul 17 18:59:56 2023 -0700

[mkandes@login1 cpu]$ git remote -v
origin	https://github.com/jerrypgreenberg/sdsc-tscc (fetch)
origin	https://github.com/jerrypgreenberg/sdsc-tscc (push)
[mkandes@login1 cpu]$ pwd
/tscc/lustre/scratch/mkandes/cpu
[mkandes@login1 cpu]$

The task here was to sort out how to resync these deployed instances and the non-standard fork back with the offical sdsc/spack repo to track the changes made by @jerrypgreenberg during the deployment of the instances on TSCC2.

[mkandes]

The following example PR by @tcooper

#92

was created with the following sequence of commands

~ ❯ cd tmp/git                                                                                                     ~/tmp/git ❯ mkdir jerry                                                                                            ~/tmp/git ❯ cd jerry                                                                                               

~/tmp/git/jerry ❯ git clone https://github.com/jerrypgreenberg/sdsc-tscc                                           Cloning into 'sdsc-tscc'...
remote: Enumerating objects: 408946, done.
remote: Counting objects: 100% (3860/3860), done.
remote: Compressing objects: 100% (395/395), done.
remote: Total 408946 (delta 3359), reused 3838 (delta 3346), pack-reused 405086
Receiving objects: 100% (408946/408946), 254.89 MiB | 37.01 MiB/s, done.
Resolving deltas: 100% (167018/167018), done.
Updating files: 100% (10759/10759), done.

~/tmp/git/jerry/spack 0.17.3 ❯ git remote -v                                                                   origin	https://github.com/jerrypgreenberg/sdsc-tscc (fetch)
origin	https://github.com/jerrypgreenberg/sdsc-tscc (push)

~/tmp/git/jerry/spack 0.17.3 ❯ git remote add upstream https://github.com/jerrypgreenberg/sdsc-tscc            
~/tmp/git/jerry/spack 0.17.3 ❯ git remote set-url origin git@github.com:tcooper/spack.git                      

~/tmp/git/jerry/spack 0.17.3 ❯ git push --force                                                                Enumerating objects: 8079, done.
Counting objects: 100% (8079/8079), done.
Delta compression using up to 16 threads
Compressing objects: 100% (879/879), done.
Writing objects: 100% (8071/8071), 48.65 MiB | 1.39 MiB/s, done.
Total 8071 (delta 6951), reused 8025 (delta 6938), pack-reused 0
remote: Resolving deltas: 100% (6951/6951), completed with 3 local objects.
remote: warning: See https://gh.io/lfs for more information.
remote: warning: File var/spack/repos/sdsc/packages/lammps/C_10_10.mesocnt is 82.67 MB; this is larger than GitHub's recommended maximum file size of 50.00 MB
remote: warning: GH001: Large files detected. You may want to try Git Large File Storage - https://git-lfs.github.com.
remote:
remote: Create a pull request for '0.17.3' on GitHub by visiting:
remote:      https://github.com/tcooper/spack/pull/new/0.17.3
remote:
To github.com:tcooper/spack.git
 * [new branch]            0.17.3 -> 0.17.3